##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779813_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 183635 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.58080431290331 34.0 34.0 34.0 34.0 34.0 2 33.67323767255697 34.0 34.0 34.0 34.0 34.0 3 33.776240912680045 34.0 34.0 34.0 34.0 34.0 4 33.5827756146704 34.0 34.0 34.0 34.0 34.0 5 33.61517139978762 34.0 34.0 34.0 34.0 34.0 6 37.30604732213358 38.0 38.0 38.0 37.0 38.0 7 37.3574917635527 38.0 38.0 38.0 37.0 38.0 8 37.26192174694366 38.0 38.0 38.0 36.0 38.0 9 37.179393906390395 38.0 38.0 38.0 36.0 38.0 10-11 37.12503335420807 38.0 38.0 38.0 35.5 38.0 12-13 37.2791842513682 38.0 38.0 38.0 36.5 38.0 14-15 37.29833092819996 38.0 38.0 38.0 36.5 38.0 16-17 37.22079396629183 38.0 38.0 38.0 36.0 38.0 18-19 37.100751490728896 38.0 38.0 38.0 36.0 38.0 20-21 37.092822718980585 38.0 38.0 38.0 36.0 38.0 22-23 37.10563345767419 38.0 38.0 38.0 36.0 38.0 24-25 37.26766956190269 38.0 38.0 38.0 36.0 38.0 26-27 37.174835951752115 38.0 38.0 38.0 36.0 38.0 28-29 36.698518800882184 38.0 37.0 38.0 34.0 38.0 30-31 36.86637895825959 38.0 37.5 38.0 35.0 38.0 32-33 36.96436681460506 38.0 38.0 38.0 36.0 38.0 34-35 37.103046804803 38.0 38.0 38.0 36.0 38.0 36-37 36.987649413238216 38.0 37.5 38.0 35.5 38.0 38-39 36.40492008604024 38.0 37.0 38.0 34.0 38.0 40-41 36.82145015928336 38.0 37.0 38.0 35.0 38.0 42-43 37.16591336074278 38.0 38.0 38.0 36.0 38.0 44-45 36.91713181038473 38.0 37.5 38.0 35.5 38.0 46-47 37.06826585345931 38.0 38.0 38.0 36.0 38.0 48-49 36.711863206905 38.0 37.0 38.0 34.5 38.0 50-51 36.86350368938383 38.0 37.5 38.0 35.0 38.0 52-53 36.78586598415335 38.0 37.0 38.0 35.0 38.0 54-55 36.795488332834154 38.0 37.0 38.0 35.0 38.0 56-57 36.66106679009992 38.0 37.0 38.0 34.5 38.0 58-59 36.750908051297415 38.0 37.0 38.0 34.5 38.0 60-61 36.41310752307567 38.0 37.0 38.0 34.0 38.0 62-63 36.27816592697471 38.0 37.0 38.0 34.0 38.0 64-65 36.65683012497618 38.0 37.0 38.0 34.0 38.0 66-67 36.42319002368829 38.0 37.0 38.0 34.0 38.0 68-69 36.485528357883844 38.0 37.0 38.0 34.0 38.0 70-71 35.58134887140251 38.0 37.0 38.0 29.5 38.0 72-73 33.888003376262695 38.0 35.5 38.0 20.5 38.0 74-75 33.625398208402544 38.0 35.5 38.0 19.0 38.0 76 33.358499196776215 38.0 34.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 0.0 21 3.0 22 7.0 23 13.0 24 36.0 25 91.0 26 193.0 27 395.0 28 609.0 29 1078.0 30 1595.0 31 2643.0 32 4198.0 33 6522.0 34 11200.0 35 21661.0 36 29856.0 37 103534.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.14835841387802 16.717699491124645 11.527061925880725 36.60688016911661 2 17.61537833201732 16.968987393470744 41.91357856617747 23.502055708334467 3 16.65695537343099 19.269202494077923 39.251232063604434 24.82261006888665 4 11.954148174367631 26.903368094317532 34.177580526588066 26.96490320472677 5 12.096822501157186 31.089933836142347 43.5467095052686 13.266534157431861 6 25.253900400250494 45.12320636044327 16.838837912162713 12.784055327143518 7 24.068941105998313 27.166389849429574 19.77509733983173 28.98957170474038 8 21.372287417975876 42.795218776377055 16.922699921039015 18.909793884608053 9 20.726985596427696 16.228387834563126 17.7874588177635 45.257167751245674 10-11 21.602635663136112 29.06962180412231 28.76466904457211 20.56307348816947 12-13 21.566150243689926 19.88564271516868 30.01361396247992 28.534593078661473 14-15 19.705121572684945 20.40161189315762 21.142756010564433 38.75051052359299 16-17 27.005745092166528 29.31957415525363 21.4025104146813 22.272170337898547 18-19 27.22492988809323 24.088272932719796 22.286056579628067 26.400740599558908 20-21 19.80913224603153 22.68739619353609 21.992267269311405 35.511204291120976 22-23 19.917771666621288 29.807770849783537 21.983554333324257 28.290903150270918 24-25 26.87118635760904 29.845044613319466 22.030566318237142 21.25320271083435 26-27 27.203419827374958 31.025675933237128 22.40204753995698 19.368856699430935 28-29 26.734010401067337 23.8004737658943 22.75165409644131 26.713861736597057 30-31 27.33411386718218 29.852969205216873 22.60625697715577 20.20665995044518 32-33 20.55218231818553 29.951534293571484 22.492171971574045 27.004111416668934 34-35 25.838483949138237 23.961935360906146 22.664797015819424 27.534783674136193 36-37 21.022680861491548 28.77746616930324 29.92022217986767 20.279630789337546 38-39 19.05736923789038 23.902850763743295 30.7934217333297 26.246358265036623 40-41 18.879298608653034 21.4022381354317 31.271271816374874 28.447191439540394 42-43 26.478756657263908 21.136064127558075 30.757648365771047 21.627530849406973 44-45 19.042666158412068 28.616276853540988 32.03964385874152 20.301413129305416 46-47 25.813978816674382 21.376916165219047 25.696898739347073 27.112206278759494 48-49 24.666049500367578 21.02485909548833 24.981076592152913 29.328014811991178 50-51 18.80625141266785 21.237810208244262 32.14047432961251 27.815464049475374 52-53 17.009391103509135 21.454368170477945 39.37427142685942 22.161969299153494 54-55 16.629891144454252 21.455929303825744 33.197944929336515 28.716234622383492 56-57 23.653462136752836 21.445714861702506 26.139084809205848 28.76173819233881 58-59 17.20297434221278 21.40273465163153 38.208040529498284 23.186250476657406 60-61 24.200058831219767 28.33159018608097 25.79640040092387 21.671950581775395 62-63 17.053993327432423 38.017294205760194 22.56825764281337 22.360454823994008 64-65 16.885613759898916 38.77923379410259 21.66269076173981 22.672461684258685 66-67 16.630077735590042 38.61830027618742 21.37674251379575 23.374879474426788 68-69 16.743592047685567 38.718382306890064 21.097160160004794 23.440865485419575 70-71 17.45711017918414 37.461194924023744 20.944393006916833 24.13730188987528 72-73 18.633215590046383 34.38176604036679 20.68859397085377 26.29642439873306 74-75 19.137469977288944 32.89372641072703 20.818469481675937 27.150334130308096 76 19.394929608147482 33.120387767883884 20.077880347466166 27.40680227650246 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 5.0 12 10.0 13 5.0 14 3.0 15 11.0 16 23.0 17 30.0 18 35.0 19 47.0 20 66.0 21 78.0 22 152.5 23 258.0 24 386.0 25 483.0 26 566.5 27 792.0 28 1087.5 29 1241.0 30 1446.0 31 1769.5 32 2271.0 33 2654.0 34 2912.0 35 3547.5 36 4372.5 37 4820.0 38 5235.5 39 6435.5 40 7681.5 41 11445.5 42 14748.0 43 16504.0 44 17583.5 45 15199.0 46 13491.0 47 12451.5 48 10429.5 49 8880.0 50 8313.0 51 7831.0 52 6803.5 53 5661.0 54 5064.0 55 4841.5 56 4214.0 57 3396.0 58 2983.0 59 2765.0 60 2271.0 61 1823.0 62 1651.0 63 1598.5 64 1449.5 65 1299.0 66 1151.0 67 1057.0 68 1000.0 69 900.5 70 814.0 71 770.0 72 706.0 73 610.0 74 573.5 75 569.0 76 517.5 77 430.0 78 358.5 79 323.0 80 280.0 81 232.5 82 168.5 83 109.0 84 101.5 85 96.0 86 67.5 87 37.0 88 26.0 89 19.0 90 15.0 91 5.5 92 4.0 93 3.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05064394042530019 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 8.168377487951644E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.445584991967763E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.015519917227108123 52-53 0.031039834454216247 54-55 0.04846570642851308 56-57 0.054183570670079235 58-59 0.035396302447790455 60-61 0.0321289514526098 62-63 0.02586652871184687 64-65 0.015792196476706512 66-67 0.03485174394859368 68-69 0.008440656737550033 70-71 0.013613962479919407 72-73 0.023688294715059764 74-75 0.01306940398072263 76 0.010891169983935524 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 183635.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.56192991532115 #Duplication Level Percentage of deduplicated Percentage of total 1 41.0931381593784 10.915130557900182 2 16.241261250179388 8.627984861273722 3 12.885171289747216 10.267650502355217 4 9.586485433708509 10.185422168976501 5 6.552268487196835 8.702044817164484 6 4.272505484142116 6.80915947395649 7 2.5503823523381923 4.742015411005527 8 1.5806630174057443 3.3588368230457153 9 1.0660762244500481 2.5485337762409124 >10 4.098243024376242 17.3817627358619 >50 0.05330381122250241 1.0057995480164457 >100 0.01230087951288517 0.8821847686987775 >500 0.002050146585480862 0.35559669997549487 >1k 0.004100293170961724 2.4368992839055736 >5k 0.0 0.0 >10k+ 0.002050146585480862 11.780978571623056 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 21634 11.780978571623056 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 2820 1.535654967734909 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 1655 0.9012443161706647 No Hit ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT 653 0.35559669997549487 TruSeq Adapter, Index 2 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 464 0.2526751436273042 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT 337 0.18351621422931358 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT 303 0.1650012252566232 No Hit CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 224 0.12198110382007787 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007079260489558091 0.0 2 0.0 0.0 0.0 0.00871293598714842 0.0 3 0.0 0.0 0.0 0.00871293598714842 0.0 4 0.0 0.0 0.0 0.013069403980722628 0.0 5 0.0 0.0 0.0 0.01742587197429684 0.0 6 0.0 0.0 0.0 0.01742587197429684 0.0 7 0.0 0.0 0.0 0.01742587197429684 0.0 8 0.0 0.0 0.0 0.019604105971083943 0.0 9 0.0 0.0 0.0 0.020693222969477496 0.0 10 0.0 0.0 0.0 0.021237781468674274 0.0 11 0.0 0.0 0.0 0.021237781468674274 0.0 12 0.0 0.0 0.0 0.021237781468674274 0.0 13 0.0 0.0 0.0 0.021237781468674274 0.0 14 0.0 0.0 0.0 0.023960573964658154 0.0 15 0.0 0.0 0.0 0.023960573964658154 0.0 16 0.0 0.0 0.0 0.026138807961445257 0.0 17 0.0 0.0 0.0 0.02886160045742914 0.0 18 0.0 0.0 0.0 0.029406158956625916 0.0 19 0.0 0.0 0.0 0.032673509951806574 0.0 20 0.0 0.0 0.0 0.03866365344297111 0.0 21 0.0 0.0 0.0 0.03866365344297111 0.0 22 0.0 0.0 0.0 0.04247556293734855 0.0 23 0.0 0.0 0.0 0.04519835543333243 0.0 24 0.0 0.0 0.0 0.047376589430119534 0.0 25 0.0 0.0 0.0 0.04955482342690663 0.0 26 0.0 0.0 0.0 0.05336673292128407 0.0 27 0.0 0.0 0.0 0.09420862036104229 0.0 28 0.0 0.0 0.0 0.1328722738040134 0.0 29 0.0 0.0 0.0 0.1764369537397555 0.0 30 0.0 0.0 0.0 0.22109075067389114 0.0 31 0.0 0.0 0.0 0.2722792495983881 0.0 32 0.0 0.0 0.0 0.3300024505132464 0.0 33 0.0 0.0 0.0 0.38336918343453047 0.0 34 0.0 0.0 0.0 0.44381517684537264 0.0 35 0.0 0.0 0.0 0.5374792387072181 0.0 36 0.0 0.0 0.0 0.7215400114357284 0.0 37 0.0 0.0 0.0 1.148473874806001 0.0 38 0.0 0.0 0.0 1.593922727148964 0.0 39 0.0 0.0 0.0 2.1352138753505594 0.0 40 0.0 0.0 0.0 2.854031094290304 0.0 41 0.0 0.0 0.0 3.79557273940153 0.0 42 0.0 0.0 0.0 4.710431018052114 0.0 43 0.0 0.0 0.0 5.698260135595066 0.0 44 0.0 0.0 0.0 6.560296239823563 0.0 45 0.0 0.0 0.0 7.3853023661066795 0.0 46 0.0 0.0 0.0 8.246249353336783 0.0 47 0.0 0.0 0.0 9.101750755574917 0.0 48 0.0 0.0 0.0 9.899528956898195 0.0 49 0.0 0.0 0.0 10.703297301712636 0.0 50 0.0 0.0 0.0 11.489639774552781 0.0 51 0.0 0.0 0.0 12.379448362240314 0.0 52 0.0 0.0 0.0 13.283415470906963 0.0 53 0.0 0.0 0.0 14.225501674517385 0.0 54 0.0 0.0 0.0 15.083181310752307 0.0 55 0.0 0.0 0.0 15.814523375173579 0.0 56 0.0 0.0 0.0 16.551311024586816 0.0 57 0.0 0.0 0.0 17.167751245677568 0.0 58 0.0 0.0 0.0 17.742260462330165 0.0 59 0.0 0.0 0.0 18.330928199961882 0.0 60 0.0 0.0 0.0 18.947912979551827 0.0 61 0.0 0.0 0.0 19.603561412584746 0.0 62 0.0 0.0 0.0 20.230348245160236 0.0 63 0.0 0.0 0.0 20.89035314618673 0.0 64 0.0 0.0 0.0 21.598823753641735 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATTGCG 15 0.0022181468 70.02998 47 TATACGA 20 7.894139E-5 70.02998 46 TTATACG 20 7.9048055E-5 70.0109 45 ATATCGT 15 0.002225351 69.97277 37 ATCGTAT 20 7.926175E-5 69.97276 39 CGAATGG 25 2.3774778E-4 56.03926 50 CGAATCT 25 2.3903218E-4 55.97821 34 TCTCGTA 3205 0.0 53.052677 38 CGTATCT 3180 0.0 52.919655 34 ATCTCGT 3220 0.0 52.914192 37 GTATCTC 3195 0.0 52.671207 35 ACGTATC 3190 0.0 52.644093 33 ACTATCG 20 0.006923558 52.536804 54 CGAACTG 20 0.0069310283 52.522484 64 GCCGTCC 40 7.427625E-7 52.522484 46 TATCTCG 3205 0.0 52.506866 36 GACGTGC 20 0.006953475 52.479576 26 TAGCGTG 20 0.006953475 52.479576 26 CGCGAAG 20 0.006953475 52.479576 3 GCAATTG 20 0.006953475 52.479576 15 >>END_MODULE