##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779812_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 112083 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.796472257166563 34.0 23.0 34.0 12.0 34.0 2 29.56500985876538 34.0 31.0 34.0 12.0 34.0 3 29.131554294585264 34.0 27.0 34.0 11.0 34.0 4 29.4191447409509 34.0 27.0 34.0 12.0 34.0 5 29.591088746732332 34.0 31.0 34.0 11.0 34.0 6 32.41190903169972 37.0 31.0 38.0 12.0 38.0 7 32.416682280096 37.0 31.0 38.0 12.0 38.0 8 31.78577482758313 37.0 27.0 38.0 11.0 38.0 9 32.75382529018674 37.0 33.0 38.0 12.0 38.0 10-11 31.349058287162194 37.0 27.0 38.0 11.5 38.0 12-13 32.20448239251269 37.0 31.0 38.0 11.0 38.0 14-15 31.013936100925207 37.0 26.0 38.0 11.0 38.0 16-17 31.62707547085642 37.0 28.5 38.0 11.0 38.0 18-19 32.371180286038026 37.5 31.0 38.0 11.0 38.0 20-21 31.23926465208819 37.0 27.0 38.0 11.0 38.0 22-23 32.06935485309994 37.0 29.0 38.0 11.0 38.0 24-25 32.35310885682931 37.5 31.0 38.0 11.0 38.0 26-27 31.309458169392325 37.0 26.5 38.0 11.0 38.0 28-29 32.43879535701221 37.5 32.0 38.0 11.0 38.0 30-31 32.78349080592061 38.0 34.0 38.0 11.0 38.0 32-33 32.89185246647574 38.0 34.0 38.0 11.0 38.0 34-35 32.8544917605703 38.0 34.0 38.0 11.0 38.0 36-37 32.35657949912118 38.0 32.0 38.0 11.0 38.0 38-39 32.30314142198192 38.0 32.0 38.0 11.0 38.0 40-41 32.335818099087284 37.5 31.0 38.0 11.0 38.0 42-43 32.68144143179608 38.0 32.5 38.0 11.0 38.0 44-45 32.754811166724664 38.0 34.0 38.0 11.0 38.0 46-47 32.63558702033315 38.0 33.0 38.0 11.0 38.0 48-49 32.38278329452281 37.5 32.0 38.0 11.0 38.0 50-51 31.793867044957754 37.5 28.5 38.0 11.0 38.0 52-53 32.34446793893811 37.0 31.0 38.0 11.0 38.0 54-55 32.458521809730286 37.5 32.0 38.0 11.0 38.0 56-57 32.53148559549619 38.0 32.0 38.0 11.0 38.0 58-59 32.725966471275754 38.0 34.0 38.0 11.0 38.0 60-61 32.64296101995842 38.0 32.5 38.0 11.0 38.0 62-63 32.617082876082904 38.0 33.0 38.0 11.0 38.0 64-65 32.62412230222246 38.0 32.5 38.0 11.0 38.0 66-67 32.52885361740853 38.0 32.0 38.0 11.0 38.0 68-69 31.95515823095385 37.0 29.0 38.0 11.0 38.0 70-71 32.04126406323885 37.0 30.5 38.0 11.0 38.0 72-73 32.20345636715648 37.0 31.0 38.0 11.0 38.0 74-75 32.22214341157892 37.5 31.0 38.0 11.0 38.0 76 31.35033858836755 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 15.0 13 223.0 14 1051.0 15 2067.0 16 2866.0 17 3245.0 18 3278.0 19 2818.0 20 2227.0 21 1778.0 22 1312.0 23 1092.0 24 985.0 25 972.0 26 1022.0 27 1178.0 28 1465.0 29 1782.0 30 2057.0 31 2625.0 32 3397.0 33 4521.0 34 6289.0 35 9535.0 36 17494.0 37 36789.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.34954453396144 21.307423962599145 10.90709563448516 33.43593586895426 2 17.354995851288777 20.77478297333226 36.65676329148934 25.213457883889618 3 16.126442011723455 26.04498452040006 31.4650749890706 26.363498478805887 4 12.149924609441218 22.640364729709233 32.00396135007093 33.20574931077862 5 11.996466903990791 33.8864948297244 33.5688730672805 20.54816519900431 6 25.164836145287783 42.42021395240942 15.890293626930523 16.524656275372276 7 23.963881974000017 28.63656236337518 23.539173960759122 23.86038170186568 8 20.571545832515483 37.85710461983191 20.822255134633572 20.74909441301904 9 22.982269851609278 17.35716389010342 20.620332116820887 39.04023414146642 10-11 22.4330377058834 26.92142971858884 25.590660076018484 25.054872499509273 12-13 21.915107175518035 23.218165190819263 26.589342671692727 28.277384961969975 14-15 23.96482963518107 25.32988945692032 23.015979229678006 27.689301678220605 16-17 24.94825217251655 26.12774575757035 23.385557002908584 25.538445067004517 18-19 21.687633832976445 26.204496788008562 25.704853675945756 26.403015703069237 20-21 23.792635814530303 25.345056788272974 24.94892178118002 25.913385616016704 22-23 25.403389497820783 25.133942711330594 23.826412030531355 25.636255760317265 24-25 21.595289079229122 28.717880085653103 23.790149892933616 25.89668094218415 26-27 23.03313645366785 28.700861868988774 24.544083795792364 23.721917881551008 28-29 22.216967663644798 27.87493754015276 26.03951031479763 23.868584481404813 30-31 22.768394850244906 26.898369957977568 26.137326802458894 24.195908389318628 32-33 21.08705156000464 28.25584611404049 25.919630987750146 24.737471338204724 34-35 21.029973991907603 29.362377933717283 25.479900607152896 24.127747467222218 36-37 23.587915348542516 26.277111712973912 25.45344214457498 24.681530793908593 38-39 23.682860342373775 25.5138506565064 26.733172422716056 24.070116578403773 40-41 21.815375418780082 26.907205917122806 26.485191579341816 24.79222708475529 42-43 20.106440877579608 26.62360257313907 27.164282973920646 26.105673575360676 44-45 19.8163754221447 25.513377023729326 28.538988994124548 26.13125856000143 46-47 21.077543518411122 25.92858608659963 27.42217542983074 25.571694965158503 48-49 20.868017451353015 26.419706824406912 27.309226198442225 25.403049525797844 50-51 23.180899613227872 26.414261051110127 25.469412882589904 24.935426453072097 52-53 18.592812367546344 27.790840341758315 26.886474669284137 26.729872621411204 54-55 19.427156528140266 26.501594949697736 26.555577862544332 27.51567065961766 56-57 20.142238244598026 26.878031151424835 26.160147413789257 26.819583190187878 58-59 19.861244339349053 27.173801503558124 26.01958640997613 26.945367747116695 60-61 18.822815479829192 26.237444837602798 26.360151889019278 28.579587793548733 62-63 19.64861717742691 26.506292857684606 26.106101908156848 27.73898805673164 64-65 20.597369219511325 26.103446429527565 25.340894893715753 27.958289457245357 66-67 19.608779264587117 28.698146966566867 24.11843708030109 27.574636688544924 68-69 20.34885017732474 29.76691276515067 23.159279994646802 26.72495706287779 70-71 21.006495244553093 29.84065237950786 23.000571010510164 26.15228136542888 72-73 21.092453469904886 30.018826174628384 22.81982190974143 26.068898445725296 74-75 22.218553978210632 29.732852694226086 22.27342892578944 25.775164401773843 76 21.376885946519867 29.76293507258273 23.214875221941668 25.645303758955734 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 3.0 15 4.5 16 13.0 17 23.0 18 26.0 19 32.0 20 44.5 21 54.0 22 76.5 23 123.0 24 200.0 25 253.0 26 302.5 27 414.5 28 543.0 29 609.0 30 721.0 31 1066.5 32 1503.5 33 1707.0 34 1919.5 35 2407.0 36 2972.0 37 3262.0 38 3616.0 39 4524.5 40 5287.0 41 5753.5 42 6012.0 43 6358.0 44 6869.5 45 7170.0 46 7305.0 47 7321.5 48 6994.5 49 6434.0 50 6217.0 51 5914.5 52 5215.0 53 4542.0 54 4266.0 55 4019.0 56 3454.0 57 2829.0 58 2522.0 59 2236.5 60 1815.0 61 1565.0 62 1451.0 63 1262.5 64 1004.5 65 874.0 66 759.5 67 706.0 68 670.0 69 551.5 70 448.5 71 428.0 72 407.5 73 357.0 74 292.0 75 257.0 76 219.5 77 176.0 78 151.5 79 133.0 80 131.0 81 113.0 82 84.5 83 72.0 84 72.0 85 61.5 86 45.5 87 40.0 88 30.0 89 22.0 90 16.0 91 8.0 92 8.0 93 8.0 94 6.0 95 4.0 96 4.0 97 3.5 98 4.0 99 5.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.001784391923842153 7 0.005353175771526458 8 8.921959619210765E-4 9 0.012490743466895068 10-11 0.004460979809605381 12-13 4.4609798096053823E-4 14-15 0.0 16-17 8.921959619210765E-4 18-19 0.002676587885763229 20-21 0.0 22-23 0.0013382939428816145 24-25 0.002676587885763229 26-27 8.921959619210765E-4 28-29 0.009814155581131839 30-31 0.0 32-33 0.0 34-35 0.0022304899048026907 36-37 0.020966605105145295 38-39 0.011152449524013454 40-41 0.0013382939428816145 42-43 0.001784391923842153 44-45 0.005799273752486996 46-47 0.003568783847684306 48-49 0.0 50-51 0.0013382939428816145 52-53 0.013829037409776682 54-55 0.0093680576001713 56-57 0.015613429333618837 58-59 0.013829037409776682 60-61 0.024535388952829598 62-63 0.010260253562092378 64-65 0.02230489904802691 66-67 0.020966605105145295 68-69 4.4609798096053823E-4 70-71 8.921959619210765E-4 72-73 0.004460979809605381 74-75 0.008921959619210763 76 0.003568783847684306 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 112083.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 67.36793269273663 #Duplication Level Percentage of deduplicated Percentage of total 1 81.15034168564921 54.669307566713954 2 8.309053345340892 11.195274930185665 3 4.345234941992902 8.781884853189155 4 2.4871536790803623 6.702176065951125 5 1.338930974201409 4.51005058751104 6 0.7151560099592096 2.8907149166242876 7 0.4595539545478625 2.167143991506294 8 0.3046034857233671 1.6416405699347805 9 0.19865444721089157 1.204464548593453 >10 0.6899931133124967 6.1900555838084275 >50 0.0013243629814059439 0.047286385981817045 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004460979809605381 0.0 2 0.0 0.0 0.0 0.004460979809605381 0.0 3 0.0 0.0 0.0 0.006245371733447534 0.0 4 0.0 0.0 0.0 0.008029763657289687 0.0 5 0.0 0.0 0.0 0.00981415558113184 0.0 6 0.0 0.0 0.0 0.00981415558113184 0.0 7 0.0 0.0 0.0 0.00981415558113184 0.0 8 0.0 0.0 0.0 0.00981415558113184 0.0 9 0.0 0.0 0.0 0.013382939428816146 0.0 10 0.0 0.0 0.0 0.013382939428816146 0.0 11 0.0 0.0 0.0 0.014275135390737222 0.0 12 0.0 0.0 0.0 0.014275135390737222 0.0 13 0.0 0.0 0.0 0.01695172327650045 0.0 14 0.0 0.0 0.0 0.017843919238421525 0.0 15 0.0 0.0 0.0 0.017843919238421525 0.0 16 0.0 0.0 0.0 0.017843919238421525 0.0 17 0.0 0.0 0.0 0.017843919238421525 0.0 18 0.0 0.0 0.0 0.020520507124184757 0.0 19 0.0 0.0 0.0 0.02676587885763229 0.0 20 0.0 0.0 0.0 0.028550270781474443 0.0 21 0.0 0.0 0.0 0.03211905462915875 0.0 22 0.0 0.0 0.0 0.03747223040068521 0.0 23 0.0 0.0 0.0 0.042825406172211665 0.0 24 0.0 0.0 0.0 0.04639419001989597 0.0 25 0.0 0.0 0.0 0.047286385981817045 0.0 26 0.0 0.0 0.0 0.04996297386758027 0.0 27 0.0 0.0 0.0 0.05888493348679104 0.0 28 0.0 0.0 0.0 0.07048348099176503 0.0 29 0.0 0.0 0.0 0.08832740023018656 0.0 30 0.0 0.0 0.0 0.11420108312589777 0.0 31 0.0 0.0 0.0 0.14096696198353006 0.0 32 0.0 0.0 0.0 0.17843919238421527 0.0 33 0.0 0.0 0.0 0.20609726720376864 0.0 34 0.0 0.0 0.0 0.24267730164253276 0.0 35 0.0 0.0 0.0 0.33814226956808796 0.0 36 0.0 0.0 0.0 0.4942765629042763 0.0 37 0.0 0.0 0.0 0.7423070403183355 0.0 38 0.0 0.0 0.0 1.0822337018102657 0.0 39 0.0 0.0 0.0 1.481937492750908 0.0 40 0.0 0.0 0.0 1.963723312188289 0.0 41 0.0 0.0 0.0 2.4597842670164076 0.0 42 0.0 0.0 0.0 3.015622351293238 0.0 43 0.0 0.0 0.0 3.6285609771330174 0.0 44 0.0 0.0 0.0 4.1701239260191105 0.0 45 0.0 0.0 0.0 4.742021537610521 0.0 46 0.0 0.0 0.0 5.385294826155617 0.0 47 0.0 0.0 0.0 6.0026944318050015 0.0 48 0.0 0.0 0.0 6.656674071893151 0.0 49 0.0 0.0 0.0 7.2544453663802715 0.0 50 8.921959619210764E-4 0.0 0.0 7.795116119304444 0.0 51 8.921959619210764E-4 0.0 0.0 8.431251840154172 0.0 52 8.921959619210764E-4 0.0 0.0 9.020101175022083 0.0 53 8.921959619210764E-4 0.0 0.0 9.63214760489994 0.0 54 8.921959619210764E-4 0.0 0.0 10.196907648795982 0.0 55 8.921959619210764E-4 0.0 0.0 10.785756983663893 0.0 56 8.921959619210764E-4 0.0 0.0 11.329104324473828 0.0 57 8.921959619210764E-4 0.0 0.0 11.783232069091655 0.0 58 8.921959619210764E-4 0.0 0.0 12.254311536985984 0.0 59 8.921959619210764E-4 0.0 0.0 12.779814958557498 0.0 60 8.921959619210764E-4 0.0 0.0 13.34546719841546 0.0 61 8.921959619210764E-4 0.0 0.0 13.897736498844607 0.0 62 8.921959619210764E-4 0.0 0.0 14.393797453672725 0.0 63 8.921959619210764E-4 0.0 0.0 14.905025739853501 0.0 64 8.921959619210764E-4 0.0 0.0 15.420715005843883 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAACTTG 15 0.002217631 70.01607 48 TCGGGCC 20 7.9059624E-5 69.98483 43 GACGATT 25 2.827921E-6 69.98483 23 GTACATC 15 0.0022215624 69.984825 38 GTGGGAT 15 0.0022215624 69.984825 11 TATACTG 15 0.0022215624 69.984825 5 GCCGTAT 30 8.319692E-6 58.346725 54 TCTTGGA 20 0.0069294544 52.512054 48 CTCGAGG 20 0.0069294544 52.512054 65 TGTACAT 20 0.0069294544 52.512054 37 AGATCTC 40 7.434446E-7 52.48862 40 GATGTTC 20 0.0069417036 52.48862 8 CCGTAGG 20 0.0069417036 52.48862 43 GTTGTGC 20 0.0069417036 52.48862 23 ACGTATA 20 0.0069417036 52.48862 24 CGACGAT 55 2.2591848E-9 50.898056 22 ATCTCGG 50 6.14491E-8 48.989384 42 TGACGCA 50 6.14491E-8 48.989384 13 TCGGTGG 65 1.8371793E-10 48.451035 45 TCGCCGT 75 1.4551915E-11 46.67738 52 >>END_MODULE