SRR1779812_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779812_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	112083
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	14095	12.57550208327757	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	1962	1.7504884772891516	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1065	0.9501886994459464	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	449	0.40059598690256326	RNA PCR Primer, Index 47 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	348	0.31048419474853456	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT	233	0.20788165912761078	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT	214	0.19092993585111034	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCGT	138	0.12312304274510855	No Hit
CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	129	0.11509327908781886	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGTG	15	0.002217183	70.01964	67
GGCACAG	15	0.0022211133	69.988396	28
ACATCCG	15	0.0022211133	69.988396	10
TCTCGTA	1995	0.0	52.973675	38
GCCGTCT	2065	0.0	52.896194	46
CGTCTTC	2070	0.0	52.76843	48
CGTATGC	2105	0.0	52.699104	41
ATCTCGT	2000	0.0	52.666267	37
CTCGTAT	2100	0.0	52.657936	39
TATGCCG	2100	0.0	52.657936	43
TCGTATG	2110	0.0	52.574223	40
AGCGTGG	20	0.0069280574	52.514732	68
GGACTAG	20	0.0069280574	52.514732	1
TCGTGTA	20	0.0069280574	52.514732	59
GCCGAGT	20	0.0069280574	52.514732	58
CCGAGTT	20	0.0069280574	52.514732	59
ATCCCAC	20	0.0069280574	52.514732	46
GAAACGG	20	0.0069280574	52.514732	67
CGTGTAG	20	0.0069280574	52.514732	60
GGGTGTC	20	0.0069403043	52.4913	15