##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779812_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 112083 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.59539805322841 34.0 34.0 34.0 34.0 34.0 2 33.67019976267587 34.0 34.0 34.0 34.0 34.0 3 33.77519338347474 34.0 34.0 34.0 34.0 34.0 4 33.5979943434776 34.0 34.0 34.0 34.0 34.0 5 33.619915598262004 34.0 34.0 34.0 34.0 34.0 6 37.31192063024723 38.0 38.0 38.0 37.0 38.0 7 37.361723008841665 38.0 38.0 38.0 37.0 38.0 8 37.27006771767351 38.0 38.0 38.0 36.0 38.0 9 37.18571058947387 38.0 38.0 38.0 36.0 38.0 10-11 37.142608602553466 38.0 38.0 38.0 36.0 38.0 12-13 37.281795633592964 38.0 38.0 38.0 36.5 38.0 14-15 37.29744921174487 38.0 38.0 38.0 36.5 38.0 16-17 37.22292854402541 38.0 38.0 38.0 36.0 38.0 18-19 37.0851734875048 38.0 38.0 38.0 36.0 38.0 20-21 37.10854456072732 38.0 38.0 38.0 36.0 38.0 22-23 37.093792100496955 38.0 38.0 38.0 36.0 38.0 24-25 37.28211236315944 38.0 38.0 38.0 36.0 38.0 26-27 37.19507864707404 38.0 38.0 38.0 36.0 38.0 28-29 36.649728326329594 38.0 37.0 38.0 34.0 38.0 30-31 36.924257023812714 38.0 37.5 38.0 36.0 38.0 32-33 37.02904543954034 38.0 38.0 38.0 36.0 38.0 34-35 37.13473943416932 38.0 38.0 38.0 36.0 38.0 36-37 37.067311724347135 38.0 38.0 38.0 36.0 38.0 38-39 36.23189065246291 38.0 37.0 38.0 34.0 38.0 40-41 36.76554874512638 38.0 37.0 38.0 35.0 38.0 42-43 37.189163387846506 38.0 38.0 38.0 36.0 38.0 44-45 36.98093823327356 38.0 38.0 38.0 35.5 38.0 46-47 37.11246130100015 38.0 38.0 38.0 36.0 38.0 48-49 36.75044832847087 38.0 37.0 38.0 34.5 38.0 50-51 36.897040585994304 38.0 37.5 38.0 35.5 38.0 52-53 36.83027756216376 38.0 37.5 38.0 35.0 38.0 54-55 36.830897638357285 38.0 37.5 38.0 35.0 38.0 56-57 36.71592480572433 38.0 37.0 38.0 34.5 38.0 58-59 36.7844142287412 38.0 37.0 38.0 35.0 38.0 60-61 36.46829135551332 38.0 37.0 38.0 34.0 38.0 62-63 36.30408714970156 38.0 37.0 38.0 34.0 38.0 64-65 36.68367192170088 38.0 37.0 38.0 34.5 38.0 66-67 36.42241017817153 38.0 37.0 38.0 34.0 38.0 68-69 36.47349285797132 38.0 37.0 38.0 34.0 38.0 70-71 35.45283406047304 38.0 36.5 38.0 28.5 38.0 72-73 33.62588885022707 38.0 35.0 38.0 20.0 38.0 74-75 33.34304934735866 38.0 34.5 38.0 19.0 38.0 76 33.1361223379103 38.0 34.0 38.0 16.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 3.0 22 5.0 23 8.0 24 17.0 25 42.0 26 111.0 27 184.0 28 371.0 29 635.0 30 961.0 31 1583.0 32 2570.0 33 4114.0 34 6997.0 35 13896.0 36 17984.0 37 62602.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.683758547428184 17.642962989412794 12.693935119887165 36.97934334327186 2 16.11305907229464 16.54488191786444 45.00593310314677 22.336125906694146 3 15.585771258799284 20.110096981701062 40.94465708448203 23.359474675017623 4 11.238992532319799 28.297779324250776 35.32649911226502 25.136729031164407 5 11.16583246344227 31.84068948903937 44.79715924805724 12.196318799461112 6 24.11427245880285 46.53248039399374 17.00168625036803 12.351560896835382 7 21.939098703639267 27.840082795785264 20.450915839154913 29.769902661420556 8 19.468608085079808 44.79894363998109 17.379977338222567 18.352470936716543 9 19.76214055655184 15.979229678006476 18.19276785953267 46.06586190590901 10-11 21.28378076960824 30.16469937457063 29.223432634743894 19.328087221077237 12-13 20.5075702827369 19.633664338035206 30.62730298082671 29.231462398401188 14-15 19.133588501378444 20.44110168357378 21.158873334939283 39.26643648010849 16-17 27.603650865876183 29.575403941721763 20.404075551154055 22.416869641248006 18-19 27.92617970611065 23.96482963518107 21.34177350713311 26.767217151575174 20-21 19.527493018566595 22.27233389541679 21.32616007779949 36.874013008217126 22-23 19.25626544614259 29.74804386035349 21.581774220889876 29.413916472614044 24-25 26.95737514777062 30.20498293667611 21.375326210603795 21.46231570494948 26-27 27.635323822524377 31.66135810069324 21.5871273966614 19.11619068012098 28-29 19.332994298867803 31.130055405369234 22.92096035973341 26.61598993602955 30-31 19.275447659323895 31.924109811478996 29.264919746973224 19.53552278222389 32-33 34.02567739978409 23.342969049722083 23.894792252170266 18.736561298323565 34-35 21.993076559335492 28.85495570247049 30.714292087114014 18.437675651080003 36-37 27.319932549985275 30.726782830580905 22.767948752263948 19.185335867169865 38-39 19.37894239090674 23.977320378647963 30.28113094760133 26.362606282843963 40-41 18.43499906319424 21.40824210629623 32.03608040470009 28.12067842580944 42-43 26.870265785177054 21.172256274368102 30.727228928561868 21.230249011892973 44-45 18.864591418859238 29.4562957808053 31.81481580614366 19.864296994191804 46-47 26.3768814182347 21.54564028443207 25.152342460498023 26.925135836835203 48-49 25.542232095857536 20.7912885986278 23.773453601349 29.893025704165666 50-51 19.381262994458673 21.189110085930736 31.624385412298 27.80524150731259 52-53 17.302543507362785 21.063364569388664 39.900490852298084 21.733601070950467 54-55 16.693966998585143 21.338891591646544 33.608865838581394 28.35827557118692 56-57 25.01216327805923 21.12259245207222 25.642421942999977 28.222822326868567 58-59 17.648660106655957 21.710511636209475 38.29216591918245 22.348662337952117 60-61 25.098506450331776 28.854023034668025 25.247549052419267 20.799921462580937 62-63 17.33108439756187 39.17967390431314 22.319795096963045 21.16944660116195 64-65 16.303038415205464 40.49703297193593 21.83152634631687 21.36840226654174 66-67 16.697681683289822 40.158868286587676 21.41285672847357 21.73059330164893 68-69 16.87873082722868 40.603445968252835 21.072872145833518 21.444951058684964 70-71 17.335070335190792 39.26010859235927 21.186217604097422 22.21860346835251 72-73 17.997822556176267 35.496796301915076 21.231415873922433 25.27396526798622 74-75 18.376506911044284 34.11753683064595 21.777151168497415 25.728805089812347 76 18.495350953902165 34.25035247086538 22.062891510359968 25.191405064872484 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.0 14 2.5 15 2.5 16 9.5 17 18.0 18 23.0 19 40.0 20 52.5 21 53.0 22 75.5 23 127.0 24 193.5 25 231.0 26 288.5 27 397.5 28 505.0 29 561.0 30 661.5 31 864.5 32 1249.5 33 1532.0 34 1742.5 35 2248.5 36 2825.5 37 3107.0 38 3365.0 39 6223.5 40 10233.5 41 11140.5 42 10638.0 43 9651.0 44 8026.0 45 6971.0 46 6554.0 47 6281.5 48 5706.0 49 5145.5 50 4888.0 51 4587.0 52 3742.5 53 3051.0 54 2903.0 55 2749.5 56 2365.0 57 1921.5 58 1709.0 59 1515.5 60 1215.0 61 1000.5 62 893.0 63 834.5 64 744.0 65 645.5 66 510.5 67 442.0 68 487.0 69 452.5 70 410.5 71 448.0 72 386.5 73 290.5 74 244.5 75 233.0 76 217.0 77 169.5 78 122.0 79 106.0 80 90.0 81 75.0 82 62.5 83 49.0 84 39.5 85 28.0 86 20.5 87 15.0 88 16.0 89 14.5 90 11.5 91 7.0 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05442395367718565 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 4.4609798096053823E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.014275135390737223 52-53 0.029442466743395523 54-55 0.05130126781046189 56-57 0.058438835505830504 58-59 0.03613393645780359 60-61 0.030780760686277137 62-63 0.026765878857632288 64-65 0.016059527314579373 66-67 0.03613393645780359 68-69 0.008921959619210763 70-71 0.011152449524013454 72-73 0.02230489904802691 74-75 0.014275135390737223 76 0.0151673313526583 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 112083.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.875922307575635 #Duplication Level Percentage of deduplicated Percentage of total 1 44.143364745867444 12.746803707966418 2 17.7908234203615 10.274528697483115 3 12.918275915340645 11.19081395037606 4 8.638961841495442 9.978319638125317 5 5.379267727483392 7.76656584852297 6 3.176270662752974 5.503064693129199 7 2.0948555538390234 4.234362035277428 8 1.3316854626911787 3.076291676703871 9 0.9083886914877182 2.360750515243168 >10 3.556310829599876 15.51707216973136 >50 0.027807817086358717 0.5272878134953561 >100 0.024718059632318864 1.5479599939330675 >500 0.0 0.0 >1k 0.006179514908079716 2.700677176735098 >5k 0.0 0.0 >10k+ 0.003089757454039858 12.57550208327757 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 14095 12.57550208327757 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 1962 1.7504884772891516 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 1065 0.9501886994459464 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT 449 0.40059598690256326 RNA PCR Primer, Index 47 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 348 0.31048419474853456 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT 233 0.20788165912761078 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT 214 0.19092993585111034 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCGT 138 0.12312304274510855 No Hit CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 129 0.11509327908781886 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008921959619210763 0.0 2 0.0 0.0 0.0 0.008921959619210763 0.0 3 0.0 0.0 0.0 0.010706351543052916 0.0 4 0.0 0.0 0.0 0.012490743466895068 0.0 5 0.0 0.0 0.0 0.015167331352658298 0.0 6 0.0 0.0 0.0 0.015167331352658298 0.0 7 0.0 0.0 0.0 0.015167331352658298 0.0 8 0.0 0.0 0.0 0.015167331352658298 0.0 9 0.0 0.0 0.0 0.020520507124184757 0.0 10 0.0 0.0 0.0 0.020520507124184757 0.0 11 0.0 0.0 0.0 0.02230489904802691 0.0 12 0.0 0.0 0.0 0.02230489904802691 0.0 13 0.0 0.0 0.0 0.024981486933790136 0.0 14 0.0 0.0 0.0 0.024981486933790136 0.0 15 0.0 0.0 0.0 0.024981486933790136 0.0 16 0.0 0.0 0.0 0.024981486933790136 0.0 17 0.0 0.0 0.0 0.024981486933790136 0.0 18 0.0 0.0 0.0 0.030334662705316595 0.0 19 0.0 0.0 0.0 0.036580034438764134 0.0 20 0.0 0.0 0.0 0.03747223040068521 0.0 21 0.0 0.0 0.0 0.03747223040068521 0.0 22 0.0 0.0 0.0 0.04014881828644844 0.0 23 0.0 0.0 0.0 0.04639419001989597 0.0 24 0.0 0.0 0.0 0.047286385981817045 0.0 25 0.0 0.0 0.0 0.05085516982950135 0.0 26 0.0 0.0 0.0 0.05353175771526458 0.0 27 0.0 0.0 0.0 0.06602250118215965 0.0 28 0.0 0.0 0.0 0.07762104868713364 0.0 29 0.0 0.0 0.0 0.09903375177323948 0.0 30 0.0 0.0 0.0 0.12579963063087177 0.0 31 0.0 0.0 0.0 0.1543499014123462 0.0 32 0.0 0.0 0.0 0.19539091566071573 0.0 33 0.0 0.0 0.0 0.22572557836603233 0.0 34 0.0 0.0 0.0 0.2640900047286386 0.0 35 0.0 0.0 0.0 0.36401595246379914 0.0 36 0.0 0.0 0.0 0.5353175771526458 0.0 37 0.0 0.0 0.0 0.7878090343763104 0.0 38 0.0 0.0 0.0 1.1366576554874512 0.0 39 0.0 0.0 0.0 1.5497443858569095 0.0 40 0.0 0.0 0.0 2.057403888190002 0.0 41 0.0 0.0 0.0 2.5623868026373313 0.0 42 0.0 0.0 0.0 3.142314177886031 0.0 43 0.0 0.0 0.0 3.767743547192705 0.0 44 0.0 0.0 0.0 4.317336259736089 0.0 45 0.0 0.0 0.0 4.912430966337446 0.0 46 0.0 0.0 0.0 5.576224762006727 0.0 47 0.0 0.0 0.0 6.21682146266606 0.0 48 0.0 0.0 0.0 6.900243569497604 0.0 49 0.0 0.0 0.0 7.522996350918516 0.0 50 0.0 0.0 0.0 8.079726631157268 0.0 51 0.0 0.0 0.0 8.719431135854679 0.0 52 0.0 0.0 0.0 9.310957058608352 0.0 53 0.0 0.0 0.0 9.915865920790843 0.0 54 0.0 0.0 0.0 10.47794937680112 0.0 55 0.0 0.0 0.0 11.055200164164058 0.0 56 0.0 0.0 0.0 11.58694895746902 0.0 57 0.0 0.0 0.0 12.036615722277242 0.0 58 0.0 0.0 0.0 12.504126406323884 0.0 59 0.0 0.0 0.0 13.036767395590768 0.0 60 0.0 0.0 0.0 13.614018182953703 0.0 61 0.0 0.0 0.0 14.17431724704014 0.0 62 0.0 0.0 0.0 14.67127039783018 0.0 63 0.0 0.0 0.0 15.190528447668246 0.0 64 0.0 0.0 0.0 15.728522612706655 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGTG 15 0.002217183 70.01964 67 GGCACAG 15 0.0022211133 69.988396 28 ACATCCG 15 0.0022211133 69.988396 10 TCTCGTA 1995 0.0 52.973675 38 GCCGTCT 2065 0.0 52.896194 46 CGTCTTC 2070 0.0 52.76843 48 CGTATGC 2105 0.0 52.699104 41 ATCTCGT 2000 0.0 52.666267 37 CTCGTAT 2100 0.0 52.657936 39 TATGCCG 2100 0.0 52.657936 43 TCGTATG 2110 0.0 52.574223 40 AGCGTGG 20 0.0069280574 52.514732 68 GGACTAG 20 0.0069280574 52.514732 1 TCGTGTA 20 0.0069280574 52.514732 59 GCCGAGT 20 0.0069280574 52.514732 58 CCGAGTT 20 0.0069280574 52.514732 59 ATCCCAC 20 0.0069280574 52.514732 46 GAAACGG 20 0.0069280574 52.514732 67 CGTGTAG 20 0.0069280574 52.514732 60 GGGTGTC 20 0.0069403043 52.4913 15 >>END_MODULE