##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779811_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 141312 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.127597090126812 34.0 23.0 34.0 12.0 34.0 2 29.79266445878623 34.0 31.0 34.0 12.0 34.0 3 29.32858497509058 34.0 27.0 34.0 11.0 34.0 4 29.61322463768116 34.0 30.0 34.0 12.0 34.0 5 30.097451030344203 34.0 32.0 34.0 11.0 34.0 6 32.87157495471015 38.0 33.0 38.0 12.0 38.0 7 33.01230610280797 38.0 34.0 38.0 12.0 38.0 8 32.396434839221016 37.0 31.0 38.0 11.0 38.0 9 33.05751103940217 38.0 34.0 38.0 12.0 38.0 10-11 31.741448001585148 37.0 28.5 38.0 11.5 38.0 12-13 32.54885289288949 37.0 31.5 38.0 11.0 38.0 14-15 31.33788001019022 37.0 27.0 38.0 11.0 38.0 16-17 31.94941689311594 37.0 29.0 38.0 11.0 38.0 18-19 32.71829710144928 37.5 33.0 38.0 11.0 38.0 20-21 31.533599411231883 37.0 27.5 38.0 11.0 38.0 22-23 32.38815882586051 37.5 31.0 38.0 11.0 38.0 24-25 32.68202983469203 38.0 32.5 38.0 11.0 38.0 26-27 31.626383463541664 37.0 27.0 38.0 11.0 38.0 28-29 32.7439354053442 37.5 32.5 38.0 11.0 38.0 30-31 33.07242130887681 38.0 34.0 38.0 11.0 38.0 32-33 33.184874603713766 38.0 34.0 38.0 11.0 38.0 34-35 33.16407311480978 38.0 34.0 38.0 11.0 38.0 36-37 32.6956592504529 38.0 32.5 38.0 11.0 38.0 38-39 32.62693543365036 38.0 32.5 38.0 11.0 38.0 40-41 32.63195623867753 38.0 32.5 38.0 11.0 38.0 42-43 33.01006637794384 38.0 34.0 38.0 11.0 38.0 44-45 33.097351958786234 38.0 34.0 38.0 11.0 38.0 46-47 32.999805395153984 38.0 34.0 38.0 11.0 38.0 48-49 32.73575138700181 38.0 33.0 38.0 11.0 38.0 50-51 32.150390625 37.5 30.5 38.0 11.0 38.0 52-53 32.68303470335145 37.5 33.0 38.0 11.0 38.0 54-55 32.822424847146735 38.0 33.5 38.0 11.0 38.0 56-57 32.89434372169384 38.0 34.0 38.0 11.0 38.0 58-59 33.07883619225544 38.0 34.0 38.0 11.0 38.0 60-61 33.00316675158514 38.0 34.0 38.0 11.0 38.0 62-63 32.994469684103265 38.0 34.0 38.0 11.0 38.0 64-65 33.003386124320656 38.0 34.0 38.0 11.0 38.0 66-67 32.931102807971016 38.0 34.0 38.0 11.0 38.0 68-69 32.36483101222826 38.0 31.0 38.0 11.0 38.0 70-71 32.46442623414855 37.0 31.5 38.0 11.0 38.0 72-73 32.61011803668478 37.5 32.0 38.0 11.0 38.0 74-75 32.620916836503625 38.0 32.0 38.0 11.0 38.0 76 31.77481742527174 37.0 30.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 25.0 13 326.0 14 1388.0 15 2607.0 16 3533.0 17 4062.0 18 3984.0 19 3481.0 20 2634.0 21 1956.0 22 1429.0 23 1104.0 24 980.0 25 935.0 26 985.0 27 1136.0 28 1421.0 29 1754.0 30 2200.0 31 2942.0 32 3789.0 33 5182.0 34 7673.0 35 11998.0 36 22755.0 37 51032.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.75492527173913 21.056244338768117 10.962267889492754 32.2265625 2 18.348052536231883 21.163100090579707 35.799507472826086 24.68933990036232 3 19.209267436594203 23.077304121376812 31.76446444746377 25.948963994565215 4 12.590579710144928 21.983978713768117 36.761916893115945 28.663524682971016 5 11.86028079710145 34.659476902173914 38.7893455615942 14.690896739130435 6 23.745125929700162 43.39426363501263 17.34709041886929 15.51352001641792 7 23.330502476999293 33.05874026893135 21.698513800424628 21.912243453644727 8 20.458566272733705 37.17288231547661 18.19828745311726 24.17026395867242 9 22.977678381859615 18.465229514925902 20.716499879686904 37.84059222352758 10-11 21.573719910691853 27.80264456844422 25.71218291893269 24.911452601931234 12-13 21.50100486865942 24.11437103713768 26.908542798913043 27.476081295289855 14-15 23.706492394461883 26.169136977528368 23.42024534450487 26.704125283504883 16-17 24.831666212587088 26.784090466805605 23.76062811589998 24.62361520470733 18-19 21.22994179360614 26.682235550130034 26.341489305238575 25.746333351025246 20-21 22.573808310688406 26.594698256340582 26.006991621376812 24.824501811594203 22-23 24.83732516214409 25.822396937219366 24.91870681022861 24.421571090407934 24-25 21.122374962404685 29.072059161757164 24.55991366346443 25.245652212373727 26-27 22.335682744565215 29.422129755434785 25.0831493432971 23.1590381567029 28-29 21.598745970581263 28.33420025547665 27.3342321015962 22.73282167234589 30-31 22.362024187784392 27.483352322182984 27.006036331212712 23.148587158819907 32-33 20.30683876811594 29.290859941123188 26.390186254528984 24.012115036231883 34-35 20.622047662013692 29.99805388956708 26.188277338428605 23.191621109990624 36-37 23.322881571869424 26.66968658871493 25.77468078480224 24.232751054613402 38-39 22.876554786885826 25.929333498469543 27.36424919053769 23.829862524106936 40-41 20.998924365942027 27.506156589673914 27.16223675271739 24.332682291666664 42-43 19.368911942764743 27.028231955644088 28.21603337308004 25.386822728511127 44-45 18.78509732596857 25.811462561083058 29.834363621566347 25.569076491382027 46-47 20.162055056259288 26.26565706602505 28.813955134102326 24.75833274361333 48-49 19.893215013586957 26.93755661231884 28.26759227807971 24.901636096014492 50-51 22.274432099639093 26.63364234661383 26.38489845021584 24.707027103531242 52-53 17.895627125481717 27.694164192467348 28.292218569411464 26.117990112639472 54-55 18.079809764434867 26.694550897567915 28.25826176498689 26.96737757301033 56-57 19.23542400951208 27.370235112602092 27.273981910059874 26.12035896782595 58-59 18.992802191191355 27.230648368992092 27.162704451034376 26.613844988782176 60-61 17.923880575885843 26.396183411429945 27.279548124973456 28.400387887710753 62-63 18.924571367907 26.38781251658793 26.777783675708193 27.90983243979688 64-65 19.718289920724803 26.010758776896942 26.185234994337485 28.08571630804077 66-67 18.962179684541695 28.486798101729466 24.642835656626783 27.90818655710206 68-69 19.27437160326087 29.71757529438406 23.901013360507246 27.107039741847828 70-71 20.14655514039855 29.962423573369566 23.497650588768117 26.39337069746377 72-73 20.652270065425157 29.496519976080364 23.34075219469734 26.510457763797135 74-75 21.800456483660362 29.510076257541712 22.762610803446627 25.9268564553513 76 21.54285997353318 29.640008775095712 23.56891634644644 25.24821490492467 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 2.5 15 8.0 16 11.5 17 10.0 18 13.0 19 11.0 20 21.0 21 36.0 22 41.0 23 57.5 24 135.0 25 201.0 26 278.5 27 390.0 28 516.5 29 609.0 30 742.0 31 1038.0 32 1527.5 33 1854.0 34 2065.0 35 2728.0 36 3710.5 37 4241.0 38 4782.5 39 6070.5 40 7333.0 41 8287.5 42 8726.0 43 9206.5 44 10124.5 45 10584.0 46 10606.0 47 10705.0 48 10386.5 49 9521.0 50 9073.0 51 8497.5 52 7103.5 53 5845.5 54 5406.0 55 4764.5 56 3651.5 57 2786.5 58 2393.0 59 2030.0 60 1429.5 61 1094.0 62 996.0 63 850.5 64 623.0 65 477.0 66 383.5 67 354.0 68 318.0 69 256.5 70 203.0 71 175.0 72 165.5 73 144.0 74 105.5 75 79.0 76 62.0 77 48.0 78 44.0 79 37.0 80 30.0 81 20.5 82 16.5 83 15.0 84 11.5 85 5.5 86 3.5 87 4.0 88 4.5 89 5.5 90 5.5 91 3.5 92 2.0 93 1.5 94 3.0 95 5.0 96 5.0 97 3.0 98 2.5 99 5.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.002122961956521739 7 0.008491847826086956 8 0.0014153079710144928 9 0.00990715579710145 10-11 0.0024767889492753625 12-13 0.0 14-15 3.538269927536232E-4 16-17 3.538269927536232E-4 18-19 0.0031844429347826085 20-21 0.0 22-23 0.001769134963768116 24-25 0.0031844429347826085 26-27 0.0 28-29 0.005307404891304348 30-31 7.076539855072464E-4 32-33 0.0 34-35 0.0031844429347826085 36-37 0.0198143115942029 38-39 0.010260982789855072 40-41 0.0 42-43 3.538269927536232E-4 44-45 0.006015058876811595 46-47 0.0014153079710144928 48-49 0.0 50-51 0.0014153079710144928 52-53 0.01450690670289855 54-55 0.009553328804347826 56-57 0.012737771739130434 58-59 0.013445425724637682 60-61 0.02406023550724638 62-63 0.013799252717391304 64-65 0.022644927536231884 66-67 0.01804517663043478 68-69 0.0 70-71 0.0 72-73 0.0038920969202898546 74-75 0.010260982789855072 76 0.002122961956521739 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 141312.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.00498188405797 #Duplication Level Percentage of deduplicated Percentage of total 1 80.2886492289674 46.57141644021739 2 7.133271520593403 8.275305706521738 3 4.043041186804606 7.035495923913043 4 2.399716962717158 5.567821557971015 5 1.539625219597892 4.465296648550725 6 1.0028303728284207 3.4901494565217392 7 0.7368729260199102 2.9919610507246377 8 0.5624146008198322 2.6098278985507246 9 0.41845598282256485 2.1845278532608696 >10 1.8726820222525864 16.728940217391305 >50 0.0024399765762248686 0.0792572463768116 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0014153079710144928 0.0 2 0.0 0.0 0.0 0.0014153079710144928 0.0 3 0.0 0.0 0.0 0.0014153079710144928 0.0 4 0.0 0.0 0.0 0.003538269927536232 0.0 5 0.0 0.0 0.0 0.007076539855072464 0.0 6 0.0 0.0 0.0 0.007076539855072464 0.0 7 0.0 0.0 0.0 0.007076539855072464 0.0 8 0.0 0.0 0.0 0.007076539855072464 0.0 9 0.0 0.0 0.0 0.009199501811594202 0.0 10 0.0 0.0 0.0 0.00990715579710145 0.0 11 0.0 0.0 0.0 0.00990715579710145 0.0 12 0.0 0.0 0.0 0.011322463768115942 0.0 13 0.0 0.0 0.0 0.012737771739130434 0.0 14 0.0 0.0 0.0 0.01556838768115942 0.0 15 0.0 0.0 0.0 0.01556838768115942 0.0 16 0.0 0.0 0.0 0.01556838768115942 0.0 17 0.0 0.0 0.0 0.01556838768115942 0.0 18 0.0 0.0 0.0 0.01556838768115942 0.0 19 0.0 0.0 0.0 0.0198143115942029 0.0 20 0.0 0.0 0.0 0.0198143115942029 0.0 21 0.0 0.0 0.0 0.026183197463768116 0.0 22 0.0 0.0 0.0 0.04104393115942029 0.0 23 0.0 0.0 0.0 0.04458220108695652 0.0 24 0.0 0.0 0.0 0.055904664855072464 0.0 25 0.0 0.0 0.0 0.05661231884057971 0.0 26 0.0 0.0 0.0 0.059442934782608696 0.0 27 0.0 0.0 0.0 0.07430366847826086 0.0 28 0.0 0.0 0.0 0.09270267210144928 0.0 29 0.0 0.0 0.0 0.12030117753623189 0.0 30 0.0 0.0 0.0 0.1450690670289855 0.0 31 0.0 0.0 0.0 0.18045176630434784 0.0 32 0.0 0.0 0.0 0.21088088768115942 0.0 33 0.0 0.0 0.0 0.244140625 0.0 34 0.0 0.0 0.0 0.3141983695652174 0.0 35 0.0 0.0 0.0 0.4104393115942029 0.0 36 0.0 0.0 0.0 0.5632925724637681 0.0 37 0.0 0.0 0.0 0.9418874547101449 0.0 38 0.0 0.0 0.0 1.4450294384057971 0.0 39 0.0 0.0 0.0 2.0585654438405796 0.0 40 0.0 0.0 0.0 2.718806612318841 0.0 41 0.0 0.0 0.0 3.4052309782608696 0.0 42 0.0 0.0 0.0 4.1482676630434785 0.0 43 0.0 0.0 0.0 4.9337635869565215 0.0 44 0.0 0.0 0.0 5.762426403985507 0.0 45 0.0 0.0 0.0 6.685914855072464 0.0 46 0.0 0.0 0.0 7.697860054347826 0.0 47 0.0 0.0 0.0 8.672299592391305 0.0 48 0.0 0.0 0.0 9.780485733695652 0.0 49 0.0 0.0 0.0 10.696897644927537 0.0 50 0.0 0.0 0.0 11.658599411231885 0.0 51 0.0 0.0 0.0 12.621008831521738 0.0 52 0.0 0.0 0.0 13.439056838768115 0.0 53 0.0 0.0 0.0 14.208984375 0.0 54 0.0 0.0 0.0 14.959097599637682 0.0 55 0.0 0.0 0.0 15.755208333333334 0.0 56 0.0 0.0 0.0 16.451539855072465 0.0 57 0.0 0.0 0.0 17.217221467391305 0.0 58 0.0 0.0 0.0 17.929121376811594 0.0 59 0.0 0.0 0.0 18.663666213768117 0.0 60 0.0 0.0 0.0 19.4435009057971 0.0 61 0.0 0.0 0.0 20.19219882246377 0.0 62 0.0 0.0 0.0 20.82625679347826 0.0 63 0.0 0.0 0.0 21.52754189311594 0.0 64 0.0 0.0 0.0 22.163722826086957 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGAGATC 30 8.342275E-6 58.333332 38 CTTACGC 30 8.342275E-6 58.333332 12 CTCGGTG 75 0.0 56.0 44 GTGTACA 25 2.3838425E-4 55.999996 36 GCGGAGA 25 2.3838425E-4 55.999996 36 GAGATCT 25 2.3838425E-4 55.999996 39 TCCTCAG 20 0.006939489 52.5 16 GCGTTGA 20 0.006939489 52.5 36 ACGATAT 20 0.006939489 52.5 25 TCTAAGA 20 0.006939489 52.5 17 TCTCGGT 80 0.0 52.5 43 TGTTCGA 20 0.006939489 52.5 37 AACGACT 20 0.006939489 52.5 6 CAATGTA 20 0.006939489 52.5 45 GACGACT 20 0.006939489 52.5 23 ACGACTC 20 0.006939489 52.5 24 CTGTGTA 20 0.006939489 52.5 34 GACTATC 20 0.006939489 52.5 38 TCGGTGG 75 0.0 51.333332 45 TCGCCGT 55 2.2628228E-9 50.90909 52 >>END_MODULE