##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779810_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 192156 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.429177335081913 34.0 27.0 34.0 12.0 34.0 2 30.09379358437936 34.0 31.0 34.0 12.0 34.0 3 29.81021149482712 34.0 31.0 34.0 11.0 34.0 4 29.823669310352006 34.0 31.0 34.0 12.0 34.0 5 30.555996169778723 34.0 32.0 34.0 21.0 34.0 6 33.145912695934555 38.0 34.0 38.0 12.0 38.0 7 33.44984804013406 38.0 34.0 38.0 12.0 38.0 8 32.704141426757424 38.0 33.0 38.0 11.0 38.0 9 33.58119444617915 38.0 34.0 38.0 21.0 38.0 10-11 32.209743645787796 37.0 30.5 38.0 11.5 38.0 12-13 33.09983815233456 38.0 34.0 38.0 11.0 38.0 14-15 31.870774266741606 37.0 29.0 38.0 11.0 38.0 16-17 32.48988582193634 37.5 30.5 38.0 11.5 38.0 18-19 33.329276733487376 38.0 34.0 38.0 16.5 38.0 20-21 32.066695809654654 37.0 30.0 38.0 16.0 38.0 22-23 32.93959855534045 38.0 32.5 38.0 16.0 38.0 24-25 33.2418529736256 38.0 34.0 38.0 16.0 38.0 26-27 32.20994660588272 37.0 30.5 38.0 11.0 38.0 28-29 33.37323060430067 38.0 34.0 38.0 16.0 38.0 30-31 33.729568683777764 38.0 35.0 38.0 21.0 38.0 32-33 33.84028081350569 38.0 35.5 38.0 21.0 38.0 34-35 33.77852369949416 38.0 34.5 38.0 21.0 38.0 36-37 33.32581340161119 38.0 34.0 38.0 16.0 38.0 38-39 33.25721549157976 38.0 34.0 38.0 16.0 38.0 40-41 33.26646058410874 38.0 34.0 38.0 15.0 38.0 42-43 33.63434657257645 38.0 35.0 38.0 16.0 38.0 44-45 33.711414163492165 38.0 34.0 38.0 21.0 38.0 46-47 33.60891671350361 38.0 34.0 38.0 16.0 38.0 48-49 33.37967588834073 38.0 34.0 38.0 16.0 38.0 50-51 32.754577010345756 37.5 32.5 38.0 11.0 38.0 52-53 33.32933137658985 38.0 34.0 38.0 20.5 38.0 54-55 33.434927871104726 38.0 34.0 38.0 16.0 38.0 56-57 33.496091717146484 38.0 34.0 38.0 16.0 38.0 58-59 33.71361289785383 38.0 35.0 38.0 20.0 38.0 60-61 33.60962707383584 38.0 34.0 38.0 21.0 38.0 62-63 33.6226139178584 38.0 34.0 38.0 20.0 38.0 64-65 33.6434199296405 38.0 34.5 38.0 20.5 38.0 66-67 33.51433470721705 38.0 34.0 38.0 20.5 38.0 68-69 32.8989466891484 38.0 33.0 38.0 11.0 38.0 70-71 32.98877214346677 37.5 33.5 38.0 11.0 38.0 72-73 33.20189585545078 38.0 34.0 38.0 15.0 38.0 74-75 33.23247777847166 38.0 34.0 38.0 14.0 38.0 76 32.345333999458774 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 40.0 13 498.0 14 1648.0 15 2951.0 16 3739.0 17 4021.0 18 4077.0 19 3632.0 20 2829.0 21 2108.0 22 1652.0 23 1447.0 24 1413.0 25 1422.0 26 1595.0 27 1865.0 28 2291.0 29 2740.0 30 3505.0 31 4403.0 32 5731.0 33 7967.0 34 11115.0 35 17339.0 36 31523.0 37 70602.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.537958741855576 19.574200129061804 9.999687753700119 31.8881533753825 2 22.469243739461685 20.183080413830428 31.82050001040821 25.527175836299676 3 17.74755927475593 23.974270904889778 30.424238639438787 27.85393118091551 4 15.229292866212868 20.843481338079478 32.417931264181185 31.509294531526464 5 14.230625117092362 33.96719332209246 35.2281479631133 16.574033597701867 6 29.407233931824095 37.797553994275304 17.017434296122822 15.777777777777777 7 27.018080754457735 31.131790692106716 20.104820493603555 21.745308059832 8 23.71103975519253 36.27147399701276 19.37070324900729 20.646782998787412 9 24.121599467052498 17.712697578315698 20.46643315516371 37.69926979946809 10-11 23.345424644416575 26.282468292835247 25.287667383124557 25.084439679623628 12-13 23.13510897395866 23.168935656445804 26.374664335227628 27.32129103436791 14-15 23.95377701913294 25.177265287748725 23.355823798954493 27.513133894163843 16-17 24.934428277024917 26.66062990486896 23.9794750098878 24.42546680821832 18-19 22.01292229707752 26.278633452772205 25.93462868562596 25.77381556452431 20-21 23.264170777909616 26.173265471804157 25.55892087678761 25.003642873498617 22-23 24.91042177876196 25.64292052323569 24.91042177876196 24.536235919240386 24-25 22.05637826993185 28.34656528674437 24.479243918115415 25.117812525208365 26-27 22.66457460012646 28.297281614534135 25.36318431262344 23.674959472715965 28-29 22.27993296763919 27.364087724959145 26.808000166540026 23.547979140861635 30-31 22.480868259655644 27.06884304036595 26.462039660793792 23.988249039184613 32-33 21.436749307854036 28.11465684131643 26.20396969129249 24.244624159537043 34-35 21.370114679316867 28.83038546510569 25.99580003591047 23.803699819666967 36-37 23.537020505786856 26.764489255217537 25.73334409069497 23.96514614830064 38-39 23.334270159989174 26.043520802756355 27.028489939522636 23.59371909773184 40-41 21.832374905675106 26.890010668470765 26.768754390986444 24.508860034867684 42-43 20.416643898529568 26.574188998956565 27.396964421858456 25.61220268065541 44-45 20.201667989435197 25.311804733342875 28.784657619797294 25.701869657424638 46-47 20.96513140775436 25.66952901379131 28.151704397606036 25.2136351808483 48-49 20.711297071129707 26.132933658069486 28.331928224983866 24.82384104581694 50-51 22.406193078324225 26.298204527712727 26.755659640905545 24.539942753057506 52-53 18.97747914205264 27.35917307281935 27.50386451052136 26.159483274606654 54-55 19.20706794701642 26.27449449605746 27.50930335441226 27.009134202513856 56-57 19.50741557126834 26.837887987008763 27.233714760096706 26.420981681626195 58-59 19.361890386717327 26.669182324467812 27.35595690417946 26.612970384635403 60-61 19.35395714910363 25.80163241509984 27.571470214670914 27.27294022112562 62-63 19.663666977218668 26.53736252869136 26.822844829829645 26.97612566426032 64-65 20.314813899075286 26.061156555890136 25.995570326916116 27.628459218118458 66-67 19.65677612111212 27.630719422026395 25.057581349108236 27.65492310775325 68-69 20.14030376597998 28.568417601461327 24.16466957578407 27.126609056774626 70-71 20.56725039681507 28.786916811948686 24.21742863833884 26.4284041528974 72-73 21.6738834011637 28.851238121012145 23.428018277767947 26.04686020005621 74-75 22.170755254618367 29.006638371400093 23.065933522604553 25.756672851376987 76 21.851971356009827 28.94010991298555 23.628169365918648 25.579749365085974 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 1.0 8 2.0 9 1.5 10 1.0 11 0.5 12 0.0 13 2.0 14 5.5 15 8.0 16 16.0 17 23.0 18 27.0 19 51.0 20 89.5 21 108.0 22 108.0 23 164.0 24 296.5 25 373.0 26 470.5 27 677.5 28 940.5 29 1094.0 30 1285.5 31 1650.0 32 2408.0 33 2993.0 34 3289.0 35 4046.5 36 5036.5 37 5565.0 38 6256.0 39 7727.5 40 9138.5 41 10298.5 42 10828.0 43 11198.0 44 12121.5 45 12712.5 46 12750.0 47 12891.5 48 12360.5 49 11415.0 50 11142.0 51 10572.0 52 9135.0 53 7771.5 54 7275.0 55 6733.0 56 5515.5 57 4363.5 58 3887.0 59 3478.0 60 2814.5 61 2281.0 62 2002.0 63 1875.0 64 1637.0 65 1432.5 66 1217.5 67 1096.0 68 1049.0 69 896.0 70 720.5 71 651.0 72 634.0 73 611.5 74 544.0 75 482.0 76 430.5 77 354.5 78 284.5 79 239.0 80 234.0 81 211.0 82 172.5 83 152.0 84 137.5 85 97.0 86 66.0 87 61.0 88 48.0 89 32.5 90 29.5 91 22.5 92 16.0 93 13.5 94 9.0 95 7.5 96 8.0 97 10.0 98 8.5 99 7.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.003122462998813464 7 0.009367388996440393 8 0.00260205249901122 9 0.00884697849663815 10-11 0.0036428734986157078 12-13 0.0 14-15 2.60205249901122E-4 16-17 0.0 18-19 0.00390307874851683 20-21 0.0 22-23 0.002862257748912342 24-25 0.00390307874851683 26-27 7.80615749703366E-4 28-29 0.00520410499802244 30-31 7.80615749703366E-4 32-33 0.0 34-35 0.005984720747725806 36-37 0.02055621474218864 38-39 0.009367388996440393 40-41 5.20410499802244E-4 42-43 7.80615749703366E-4 44-45 0.004423489248319075 46-47 0.003122462998813464 48-49 0.0 50-51 0.003122462998813464 52-53 0.011969441495451613 54-55 0.010928620495847124 56-57 0.013790878244759466 58-59 0.013530672994858346 60-61 0.024979703990507713 62-63 0.0130102624950561 64-65 0.02211744624159537 66-67 0.018994983242781906 68-69 7.80615749703366E-4 70-71 5.20410499802244E-4 72-73 0.00520410499802244 74-75 0.008066362746934782 76 0.002081641999208976 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 192156.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.64342924188694 #Duplication Level Percentage of deduplicated Percentage of total 1 75.0051860720937 42.485509500492036 2 10.194201595678793 11.548690735247254 3 5.7091780486136 9.70162268477936 4 3.168908376683749 7.17991349634835 5 1.894657426401928 5.365994693500661 6 1.0563161925565687 3.590002290608246 7 0.6806096860606515 2.698644661560358 8 0.45240917080039106 2.050080548369016 9 0.3218679540506055 1.640853421244675 >10 1.5086935166436637 13.478476992817468 >50 0.00797196041633009 0.26021097503257423 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002081641999208976 0.0 2 0.0 0.0 0.0 0.002081641999208976 0.0 3 0.0 0.0 0.0 0.002081641999208976 0.0 4 0.0 0.0 0.0 0.00260205249901122 0.0 5 0.0 0.0 0.0 0.004683694498220196 0.0 6 0.0 0.0 0.0 0.004683694498220196 0.0 7 0.0 0.0 0.0 0.004683694498220196 0.0 8 0.0 0.0 0.0 0.004683694498220196 0.0 9 0.0 0.0 0.0 0.006244925997626928 0.0 10 0.0 0.0 0.0 0.006244925997626928 0.0 11 0.0 0.0 0.0 0.006765336497429172 0.0 12 0.0 0.0 0.0 0.006765336497429172 0.0 13 0.0 0.0 0.0 0.00780615749703366 0.0 14 0.0 0.0 0.0 0.00780615749703366 0.0 15 0.0 0.0 0.0 0.008326567996835904 0.0 16 0.0 0.0 0.0 0.008326567996835904 0.0 17 0.0 0.0 0.0 0.008326567996835904 0.0 18 0.0 0.0 0.0 0.009887799496242636 0.0 19 0.0 0.0 0.0 0.009887799496242636 0.0 20 0.0 0.0 0.0 0.009887799496242636 0.0 21 0.0 0.0 0.0 0.009887799496242636 0.0 22 0.0 0.0 0.0 0.016653135993671807 0.0 23 0.0 0.0 0.0 0.018734777992880786 0.0 24 0.0 0.0 0.0 0.019775598992485273 0.0 25 0.0 0.0 0.0 0.023418472491100982 0.0 26 0.0 0.0 0.0 0.028622577489123422 0.0 27 0.0 0.0 0.0 0.06557172297508275 0.0 28 0.0 0.0 0.0 0.09887799496242636 0.0 29 0.0 0.0 0.0 0.1311434459501655 0.0 30 0.0 0.0 0.0 0.1644497179375091 0.0 31 0.0 0.0 0.0 0.2055621474218864 0.0 32 0.0 0.0 0.0 0.24875621890547264 0.0 33 0.0 0.0 0.0 0.2909094693894544 0.0 34 0.0 0.0 0.0 0.3601240658631529 0.0 35 0.0 0.0 0.0 0.47253273382043753 0.0 36 0.0 0.0 0.0 0.6302171152605175 0.0 37 0.0 0.0 0.0 0.9268511001477966 0.0 38 0.0 0.0 0.0 1.341618268490185 0.0 39 0.0 0.0 0.0 1.8401715273007349 0.0 40 0.0 0.0 0.0 2.4266741605778637 0.0 41 0.0 0.0 0.0 3.2785861487541372 0.0 42 0.0 0.0 0.0 4.227294489893628 0.0 43 0.0 0.0 0.0 5.193176377526593 0.0 44 0.0 0.0 0.0 6.007098399217303 0.0 45 0.0 0.0 0.0 6.784071275422053 0.0 46 0.0 0.0 0.0 7.515768438144008 0.0 47 0.0 0.0 0.0 8.290139261849747 0.0 48 0.0 0.0 0.0 9.020275193072296 0.0 49 0.0 0.0 0.0 9.732196756801764 0.0 50 0.0 0.0 0.0 10.494598139012053 0.0 51 0.0 0.0 0.0 11.251795416224319 0.0 52 0.0 0.0 0.0 12.230167155852536 0.0 53 0.0 0.0 0.0 13.288682112450301 0.0 54 0.0 0.0 0.0 14.308686692062698 0.0 55 0.0 0.0 0.0 15.127292408251629 0.0 56 0.0 0.0 0.0 15.78821374300048 0.0 57 0.0 0.0 0.0 16.46318616124399 0.0 58 0.0 0.0 0.0 17.143883094985323 0.0 59 0.0 0.0 0.0 17.75016132725494 0.0 60 0.0 0.0 0.0 18.402756094006953 0.0 61 0.0 0.0 0.0 18.983013801286454 0.0 62 0.0 0.0 0.0 19.6892108495181 0.0 63 0.0 0.0 0.0 20.33399945877308 0.0 64 0.0 0.0 0.0 20.991277920023315 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGCGT 15 0.0022184707 70.028656 33 GGTCGTC 15 0.0022230593 69.992195 50 CGATACT 25 2.3873242E-4 55.993755 25 ACGCTTC 45 2.7011993E-8 54.410034 15 CGGTGGT 65 3.6379788E-12 53.84015 46 TGGACTA 20 0.006932035 52.52149 35 GTCGTCG 20 0.006932035 52.52149 51 GTACTCG 20 0.006939181 52.507812 3 CACGAAC 20 0.0069463323 52.49414 23 TTACGCT 20 0.006960652 52.46682 13 TGGTCGC 65 1.8371793E-10 48.456135 49 TTACGTG 45 1.6736831E-6 46.68577 32 CGACCCG 30 5.870339E-4 46.66146 24 GACGATC 30 5.870339E-4 46.66146 23 GACGAAT 30 5.870339E-4 46.66146 23 CGACGAT 90 0.0 46.649315 22 GGACGAT 30 5.8778794E-4 46.649315 22 TCGGTGG 75 1.4551915E-11 46.649315 45 ACGATAC 55 1.3061253E-7 44.540485 24 GTAGATC 145 0.0 43.432117 38 >>END_MODULE