SRR1779810_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779810_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	192156
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	18386	9.568267449364058	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2344	1.21984221153646	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1252	0.6515539457524094	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	493	0.2565623764025063	RNA PCR Primer, Index 42 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	439	0.22846020941318512	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	339	0.17641915943296071	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	259	0.1347863194487812	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	230	0.11969441495451613	RNA PCR Primer, Index 32 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	209	0.108765794458669	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGCA	15	0.0022272284	69.959145	11
ATCGTAT	30	8.382625E-6	58.299286	39
TCCGTAT	30	8.382625E-6	58.299286	13
CGTCTTC	2735	0.0	54.056534	48
CCGTCTT	2725	0.0	53.99778	47
TATGCCG	2730	0.0	53.94286	43
TCGTATG	2750	0.0	53.932144	40
TCTCGTA	2595	0.0	53.91842	38
GCCGTCT	2730	0.0	53.898884	46
CGTATGC	2750	0.0	53.804943	41
CTCGTAT	2725	0.0	53.78511	39
ATCTCGT	2595	0.0	53.783623	37
GATCTCG	2595	0.0	53.648827	36
TTCTGCT	2780	0.0	53.57355	52
TCTTCTG	2775	0.0	53.543797	50
CTTCTGC	2790	0.0	53.38153	51
ATGCCGT	2755	0.0	53.32639	44
TGCCGTC	2765	0.0	53.18889	45
CTGCTTG	2790	0.0	53.130325	54
GTCTTCT	2790	0.0	53.130325	49