SRR1779809_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779809_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	219476
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	24786	11.293262133445115	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	3440	1.5673695529351728	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	1728	0.7873298219395287	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	672	0.30618381964315	RNA PCR Primer, Index 15 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	591	0.26927773423973467	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT	279	0.1271209608339864	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAACTCGTATGCCGT	261	0.1189196085221163	No Hit
CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	260	0.11846397783812353	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	20	0.006960246	52.470097	20
ATGTGCG	20	0.006960246	52.470097	28
TCGGAAA	20	0.006960246	52.470097	29
GTGCGTT	20	0.006960246	52.470097	6
TATGCCG	3515	0.0	50.35537	43
CGTATGC	3540	0.0	50.296192	41
GCCGTCT	3505	0.0	50.279823	46
CTCGTAT	3515	0.0	50.25585	39
TCGTATG	3540	0.0	50.19738	40
ATGCCGT	3515	0.0	50.156334	44
GCTTGAA	3500	0.0	50.151447	56
GTATGCC	3530	0.0	50.14139	42
TCTCGTA	3420	0.0	50.117634	38
CCGTCTT	3520	0.0	50.065567	47
CGTCTTC	3525	0.0	49.89516	48
TGCTTGA	3515	0.0	49.837753	55
TGCCGTC	3535	0.0	49.830383	45
ATCTCGT	3445	0.0	49.753937	37
CTGCTTG	3530	0.0	49.72523	54
TAATCTC	3420	0.0	49.40167	35