##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779809_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 219476 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.594538810621664 34.0 34.0 34.0 34.0 34.0 2 33.67862545335253 34.0 34.0 34.0 34.0 34.0 3 33.77274508374492 34.0 34.0 34.0 34.0 34.0 4 33.586642730868064 34.0 34.0 34.0 34.0 34.0 5 33.61637718930544 34.0 34.0 34.0 34.0 34.0 6 37.296565455904066 38.0 38.0 38.0 37.0 38.0 7 37.363187774517485 38.0 38.0 38.0 37.0 38.0 8 37.261577575680256 38.0 38.0 38.0 36.0 38.0 9 37.17978275528987 38.0 38.0 38.0 36.0 38.0 10-11 37.12761076381928 38.0 38.0 38.0 35.5 38.0 12-13 37.29720789516849 38.0 38.0 38.0 36.5 38.0 14-15 37.310844921540394 38.0 38.0 38.0 36.5 38.0 16-17 37.23965490531994 38.0 38.0 38.0 36.0 38.0 18-19 37.105731378373946 38.0 38.0 38.0 36.0 38.0 20-21 37.12183792305309 38.0 38.0 38.0 36.0 38.0 22-23 37.107080045198565 38.0 38.0 38.0 36.0 38.0 24-25 37.287926698135564 38.0 38.0 38.0 36.0 38.0 26-27 37.183268330022415 38.0 38.0 38.0 36.0 38.0 28-29 36.701534564143685 38.0 37.0 38.0 34.0 38.0 30-31 36.94310995279666 38.0 37.0 38.0 35.5 38.0 32-33 36.979510288140844 38.0 37.5 38.0 36.0 38.0 34-35 37.0822527292278 38.0 38.0 38.0 36.0 38.0 36-37 37.03956013413767 38.0 38.0 38.0 36.0 38.0 38-39 36.473844520585395 38.0 37.0 38.0 34.0 38.0 40-41 36.821048770708416 38.0 37.0 38.0 35.0 38.0 42-43 37.15581658131185 38.0 38.0 38.0 36.0 38.0 44-45 36.91921440157466 38.0 38.0 38.0 35.5 38.0 46-47 37.0627517359529 38.0 38.0 38.0 36.0 38.0 48-49 36.71707157046784 38.0 37.0 38.0 34.5 38.0 50-51 36.86985820773114 38.0 37.5 38.0 35.0 38.0 52-53 36.785001549144326 38.0 37.5 38.0 35.0 38.0 54-55 36.7831266288797 38.0 37.0 38.0 35.0 38.0 56-57 36.66612750369061 38.0 37.0 38.0 34.5 38.0 58-59 36.74524549381253 38.0 37.0 38.0 35.0 38.0 60-61 36.4192303486486 38.0 37.0 38.0 34.0 38.0 62-63 36.23608276075744 38.0 37.0 38.0 34.0 38.0 64-65 36.58769295959467 38.0 37.0 38.0 34.0 38.0 66-67 36.34467094352002 38.0 37.0 38.0 33.5 38.0 68-69 36.444057664619365 38.0 37.0 38.0 34.0 38.0 70-71 35.52556999398568 38.0 36.5 38.0 29.0 38.0 72-73 33.91019974849186 38.0 35.5 38.0 21.5 38.0 74-75 33.66754679327124 38.0 35.5 38.0 19.5 38.0 76 33.41207694690991 38.0 34.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 1.0 22 7.0 23 21.0 24 65.0 25 126.0 26 256.0 27 473.0 28 778.0 29 1218.0 30 2014.0 31 3150.0 32 4828.0 33 7634.0 34 13047.0 35 25801.0 36 36661.0 37 123395.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.60296296296296 13.707122507122508 10.275099715099715 36.41481481481482 2 19.98988499881536 17.663890357032205 37.717563651606554 24.628660992545882 3 19.687346224644152 16.340283220033168 37.51116295175782 26.46120760356486 4 13.85345094680056 25.494359292132167 29.99143414314094 30.660755617926334 5 14.511837285170131 28.054548105487616 40.76254351273032 16.671071096611932 6 28.63957790373435 40.45134775556325 16.42366363520385 14.48541070549855 7 26.97470338442472 25.658841969053565 17.061090962109752 30.30536368441196 8 23.91605460278117 40.58575880734112 15.85913721773679 19.639049372140917 9 22.49038619256775 16.216351673987134 16.087408190417175 45.20585394302794 10-11 23.42852977090889 27.284304434197814 26.722056170150722 22.56510962474257 12-13 23.695757167070656 18.20153456414369 27.905556871821975 30.19715139696368 14-15 21.535156463576882 18.825520785871806 19.69258597751007 39.946736773041245 16-17 29.177677741529827 27.1148098197525 19.08955876724562 24.61795367147205 18-19 29.27586615393027 22.066649656454466 20.552816708888443 28.104667480726818 20-21 22.522052525105252 20.363957790373437 19.973937924875614 37.1400517596457 22-23 22.05503107401265 27.84427454482495 19.899897938726784 30.200796442435617 24-25 29.385713114081852 27.576159362840247 19.693904517163766 23.34422300591414 26-27 29.298875503471905 28.460287229583187 20.060735570176238 22.180101696768666 28-29 21.88075233738541 28.514735096320326 20.43184676228836 29.172665804005902 30-31 21.636534290765276 28.154331225282036 27.887103829120267 22.32203065483242 32-33 27.893027028012174 29.294319196631978 21.29481127777069 21.517842497585157 34-35 22.863775538099837 21.127822632087334 34.41515245402687 21.593249375785962 36-37 21.323971641546226 33.74150248774354 23.200942244254495 21.73358362645574 38-39 21.15857770325685 22.35870892489384 28.087125699393102 28.395587672456212 40-41 20.87358071041936 19.6654759518125 29.468142302575224 29.99280103519291 42-43 28.097669215926153 19.216723506723984 28.95152306293869 23.734084214411176 44-45 21.115292788277536 25.93244819479123 30.729555851209245 22.222703165721995 46-47 27.002496856148277 19.546328527948386 24.602462228216297 28.848712387687037 48-49 26.04681149647342 19.048096375002277 23.75316663325375 31.151925495270554 50-51 20.157817263741222 19.878914100560085 30.87941083985399 29.083857795844708 52-53 18.308048868864898 20.163078528829303 37.48436100609152 24.044511596214278 54-55 18.120003738292194 20.346111150368245 31.487589553752766 30.046295557586795 56-57 25.059782844090446 20.170469440651424 24.4499864363042 30.319761278953933 58-59 18.626307009307457 19.813440659270537 36.76331166759346 24.796940663828547 60-61 25.114520517974594 26.509961575802325 24.570519569904235 23.804998336318846 62-63 18.42261185832722 35.72082932632049 21.64265497454502 24.213903840807266 64-65 18.41190275467657 36.91585590922555 20.571213743762673 24.101027592335207 66-67 18.20094171486916 36.77109400283518 20.086650530797176 24.94131375149849 68-69 18.290640742014933 37.2085128487878 19.805519544875636 24.695326864321633 70-71 18.270700847378457 35.98726767726251 19.93469785797126 25.80733361738778 72-73 18.998539327634965 33.545787862974805 20.445539252436543 27.01013355695369 74-75 19.654990134112275 32.90558368232297 20.674389249144426 26.765036934420326 76 18.985732448085887 33.6966675628506 20.563319951332655 26.754280037730858 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 4.0 12 8.0 13 8.5 14 9.0 15 10.0 16 36.5 17 62.0 18 82.5 19 104.0 20 169.0 21 233.0 22 258.5 23 413.5 24 620.0 25 697.0 26 712.0 27 901.5 28 1270.0 29 1464.0 30 1663.5 31 2151.0 32 2519.5 33 2600.0 34 2941.5 35 3582.0 36 8165.0 37 12449.0 38 14473.0 39 15434.5 40 12562.5 41 9525.5 42 8298.0 43 7861.0 44 7392.5 45 7378.5 46 7396.0 47 7322.0 48 7284.5 49 7552.0 50 7783.0 51 7644.0 52 7443.0 53 7335.5 54 7290.0 55 7318.5 56 7235.5 57 6954.5 58 6785.0 59 6566.0 60 5987.0 61 5213.0 62 4799.0 63 4584.5 64 4133.0 65 3589.5 66 3184.5 67 3086.0 68 2828.5 69 2507.5 70 2343.5 71 2243.0 72 2019.5 73 1678.0 74 1535.5 75 1511.0 76 1415.0 77 1273.0 78 1072.5 79 918.0 80 786.0 81 643.5 82 557.0 83 481.0 84 428.0 85 300.0 86 190.5 87 156.0 88 126.0 89 83.5 90 51.5 91 24.0 92 16.0 93 9.5 94 3.0 95 2.0 96 1.0 97 1.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04601869908327107 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 9.112613679855655E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.2781534199639138E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.020503380779675225 52-53 0.03303322458947675 54-55 0.056726020157101466 56-57 0.06401611110098598 58-59 0.037361716087408195 60-61 0.03781734677140097 62-63 0.031438517195502017 64-65 0.014124551203776266 66-67 0.040551130875357666 68-69 0.008884798337859266 70-71 0.015719258597751008 72-73 0.025743133645592227 74-75 0.015035812571761831 76 0.012302028467805136 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 219476.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.13426524995899 #Duplication Level Percentage of deduplicated Percentage of total 1 37.993959760091876 12.209079808270609 2 19.264962354842826 12.38130820681988 3 15.829398670012903 15.259982868286281 4 11.534589589802486 14.826222457125152 5 7.2227657492875075 11.60491352129618 6 4.1827952415387015 8.064663106672256 7 2.121173451302338 4.771364522772421 8 0.9499907836715017 2.442180466201316 9 0.45514483814709256 1.3163170460551494 >10 0.408354247309541 1.682644115985347 >50 0.012761070228423156 0.30891760374710675 >100 0.017014760304564207 0.9089832145656017 >500 0.002835793384094035 0.5754615538828847 >1k 0.002835793384094035 2.3546993748747016 >5k 0.0 0.0 >10k+ 0.0014178966920470174 11.293262133445115 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT 24786 11.293262133445115 No Hit TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 3440 1.5673695529351728 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 1728 0.7873298219395287 No Hit ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT 672 0.30618381964315 RNA PCR Primer, Index 15 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 591 0.26927773423973467 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT 279 0.1271209608339864 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAACTCGTATGCCGT 261 0.1189196085221163 No Hit CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 260 0.11846397783812353 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.556306839927828E-4 0.0 2 0.0 0.0 0.0 0.0018225227359711313 0.0 3 0.0 0.0 0.0 0.002278153419963914 0.0 4 0.0 0.0 0.0 0.00820135231187009 0.0 5 0.0 0.0 0.0 0.010023875047841222 0.0 6 0.0 0.0 0.0 0.010023875047841222 0.0 7 0.0 0.0 0.0 0.010935136415826788 0.0 8 0.0 0.0 0.0 0.01139076709981957 0.0 9 0.0 0.0 0.0 0.01913648872769688 0.0 10 0.0 0.0 0.0 0.023237164883631922 0.0 11 0.0 0.0 0.0 0.024604056935610272 0.0 12 0.0 0.0 0.0 0.02779347172355975 0.0 13 0.0 0.0 0.0 0.029615994459530882 0.0 14 0.0 0.0 0.0 0.031438517195502017 0.0 15 0.0 0.0 0.0 0.041462392243343235 0.0 16 0.0 0.0 0.0 0.042373653611328804 0.0 17 0.0 0.0 0.0 0.043284914979314366 0.0 18 0.0 0.0 0.0 0.04465180703129271 0.0 19 0.0 0.0 0.0 0.05239752865917002 0.0 20 0.0 0.0 0.0 0.05740946618309063 0.0 21 0.0 0.0 0.0 0.06151014233902568 0.0 22 0.0 0.0 0.0 0.06925586396690299 0.0 23 0.0 0.0 0.0 0.07198964807085968 0.0 24 0.0 0.0 0.0 0.07791284696276586 0.0 25 0.0 0.0 0.0 0.08155789243470812 0.0 26 0.0 0.0 0.0 0.09385992090251326 0.0 27 0.0 0.0 0.0 0.16858335307732963 0.0 28 0.0 0.0 0.0 0.21141263737265123 0.0 29 0.0 0.0 0.0 0.2697333649237274 0.0 30 0.0 0.0 0.0 0.3266872004228253 0.0 31 0.0 0.0 0.0 0.40186626328163444 0.0 32 0.0 0.0 0.0 0.4702108658805519 0.0 33 0.0 0.0 0.0 0.545389928739361 0.0 34 0.0 0.0 0.0 0.6921030089850371 0.0 35 0.0 0.0 0.0 0.8738996518981574 0.0 36 0.0 0.0 0.0 1.1928411306931055 0.0 37 0.0 0.0 0.0 1.7026918660810293 0.0 38 0.0 0.0 0.0 2.284987880223806 0.0 39 0.0 0.0 0.0 2.905101241137983 0.0 40 0.0 0.0 0.0 3.6669157447739162 0.0 41 0.0 0.0 0.0 4.629663380050666 0.0 42 0.0 0.0 0.0 5.802456760648089 0.0 43 0.0 0.0 0.0 6.934699010370155 0.0 44 0.0 0.0 0.0 7.984016475605533 0.0 45 0.0 0.0 0.0 8.93628460515045 0.0 46 0.0 0.0 0.0 9.960086752082232 0.0 47 0.0 0.0 0.0 10.800269733364924 0.0 48 0.0 0.0 0.0 11.542036486905173 0.0 49 0.0 0.0 0.0 12.239151433414133 0.0 50 0.0 0.0 0.0 12.91348484572345 0.0 51 0.0 0.0 0.0 13.708560389290856 0.0 52 0.0 0.0 0.0 14.633035047112212 0.0 53 0.0 0.0 0.0 15.62630993821648 0.0 54 0.0 0.0 0.0 16.44188886256356 0.0 55 0.0 0.0 0.0 17.203703366199495 0.0 56 0.0 0.0 0.0 17.98100931309118 0.0 57 0.0 0.0 0.0 18.695438225591865 0.0 58 0.0 0.0 0.0 19.288669376150466 0.0 59 0.0 0.0 0.0 19.804443310430297 0.0 60 0.0 0.0 0.0 20.283311159306713 0.0 61 0.0 0.0 0.0 20.7954400481146 0.0 62 0.0 0.0 0.0 21.316225919918352 0.0 63 0.0 0.0 0.0 21.903078240901056 0.0 64 0.0 0.0 0.0 22.507700158559476 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGG 20 0.006960246 52.470097 20 ATGTGCG 20 0.006960246 52.470097 28 TCGGAAA 20 0.006960246 52.470097 29 GTGCGTT 20 0.006960246 52.470097 6 TATGCCG 3515 0.0 50.35537 43 CGTATGC 3540 0.0 50.296192 41 GCCGTCT 3505 0.0 50.279823 46 CTCGTAT 3515 0.0 50.25585 39 TCGTATG 3540 0.0 50.19738 40 ATGCCGT 3515 0.0 50.156334 44 GCTTGAA 3500 0.0 50.151447 56 GTATGCC 3530 0.0 50.14139 42 TCTCGTA 3420 0.0 50.117634 38 CCGTCTT 3520 0.0 50.065567 47 CGTCTTC 3525 0.0 49.89516 48 TGCTTGA 3515 0.0 49.837753 55 TGCCGTC 3535 0.0 49.830383 45 ATCTCGT 3445 0.0 49.753937 37 CTGCTTG 3530 0.0 49.72523 54 TAATCTC 3420 0.0 49.40167 35 >>END_MODULE