FastQCFastQC Report
Wed 25 May 2016
SRR1779808_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779808_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157392
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTGGA207.907404E-570.046
ACGAGTG207.907404E-570.024
AATGGCG200.00694094852.570
ATGGTTC200.00694094852.59
GACGATT200.00694094852.523
GGTTCTA200.00694094852.532
TCGAAAG200.00694094852.53
ACGTGTA305.86386E-446.66666834
CGACGAT802.910383E-1143.7522
TCTCGGT1000.042.043
TAGATCT1500.041.99999639
TCGGTGG855.638867E-1141.1764745
TGGTCGC855.638867E-1141.1764749
CGCCGTA602.580764E-740.83333653
AATATGC350.001252468840.00000446
GTTACAT350.001252468840.0000043
CGGTGGT701.9101208E-840.00000446
GACGATC350.001252468840.00000423
CTCGGTG801.4078978E-939.37544
GTAGATC1800.038.88888538
Produced by FastQC (version 0.11.5)