##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779808_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 157392 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.85015121480126 34.0 23.0 34.0 12.0 34.0 2 29.55509174545085 34.0 27.0 34.0 12.0 34.0 3 29.14640515401037 34.0 27.0 34.0 11.0 34.0 4 29.36627020433059 34.0 27.0 34.0 12.0 34.0 5 29.680250584527805 34.0 31.0 34.0 11.0 34.0 6 32.31335137745248 37.0 31.0 38.0 12.0 38.0 7 32.617318542238486 37.0 31.0 38.0 12.0 38.0 8 31.938275134695537 37.0 28.0 38.0 11.0 38.0 9 32.737191216834404 37.0 33.0 38.0 12.0 38.0 10-11 31.361771881671242 37.0 28.5 38.0 11.5 38.0 12-13 32.19884428687608 37.0 31.0 38.0 11.0 38.0 14-15 31.002010902714243 37.0 26.0 38.0 11.0 38.0 16-17 31.625298617464676 37.0 28.5 38.0 11.0 38.0 18-19 32.41685727355902 37.5 31.0 38.0 11.0 38.0 20-21 31.231641379485616 37.0 27.0 38.0 11.0 38.0 22-23 32.08276468943784 37.0 29.5 38.0 11.0 38.0 24-25 32.36174329063739 37.5 31.0 38.0 11.0 38.0 26-27 31.304608874656907 37.0 26.5 38.0 11.0 38.0 28-29 32.41267662905357 37.5 32.0 38.0 11.0 38.0 30-31 32.762160719731625 38.0 34.0 38.0 11.0 38.0 32-33 32.89318072074819 38.0 34.0 38.0 11.0 38.0 34-35 32.85482108366372 38.0 34.0 38.0 11.0 38.0 36-37 32.37953009047474 38.0 31.5 38.0 11.0 38.0 38-39 32.313716707329476 37.5 32.0 38.0 11.0 38.0 40-41 32.309348632713224 37.5 31.0 38.0 11.0 38.0 42-43 32.655125419335164 38.0 32.5 38.0 11.0 38.0 44-45 32.72889981701738 38.0 33.5 38.0 11.0 38.0 46-47 32.62819584222832 38.0 33.0 38.0 11.0 38.0 48-49 32.32716084680288 37.5 31.5 38.0 11.0 38.0 50-51 31.75076560435092 37.5 28.5 38.0 11.0 38.0 52-53 32.29040866117719 37.0 31.0 38.0 11.0 38.0 54-55 32.411764892751854 37.5 32.0 38.0 11.0 38.0 56-57 32.47259390566229 38.0 31.5 38.0 11.0 38.0 58-59 32.65906145166209 38.0 33.5 38.0 11.0 38.0 60-61 32.58261855748704 38.0 32.5 38.0 11.0 38.0 62-63 32.542749949171494 38.0 32.0 38.0 11.0 38.0 64-65 32.57189691979262 38.0 32.5 38.0 11.0 38.0 66-67 32.48698154925282 38.0 31.0 38.0 11.0 38.0 68-69 31.918874529836334 37.0 29.0 38.0 11.0 38.0 70-71 31.969496543661684 37.0 30.0 38.0 11.0 38.0 72-73 32.12341478601199 37.0 31.0 38.0 11.0 38.0 74-75 32.11414493748094 37.0 30.5 38.0 11.0 38.0 76 31.149880553014132 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 36.0 13 381.0 14 1488.0 15 2822.0 16 3841.0 17 4332.0 18 4393.0 19 3896.0 20 3130.0 21 2471.0 22 1940.0 23 1643.0 24 1520.0 25 1499.0 26 1601.0 27 1857.0 28 2160.0 29 2574.0 30 3144.0 31 3867.0 32 4955.0 33 6540.0 34 8964.0 35 13558.0 36 24205.0 37 50574.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.75810888943954 17.92564918768148 9.45555280229241 33.86068912058657 2 20.537257293890413 20.568389752973466 32.001626512148015 26.892726440988106 3 18.151494358035986 19.99529836332215 33.30728372471282 28.545923553929043 4 13.286571109077972 24.103512249669613 29.374428179322965 33.23548846192945 5 17.366829317881468 31.075912371658028 32.75071159906476 18.80654671139575 6 27.212193990685503 36.19122047919486 15.900094669894338 20.696490860225303 7 26.273151825142165 31.417225275598053 18.109095530069574 24.2005273691902 8 23.072426566361898 38.539396519407575 16.43274222140329 21.955434692827236 9 24.112186350321828 18.995304388712743 17.68193110985443 39.210578151110994 10-11 23.32024474391476 26.19401610023572 23.220491902229508 27.26524725362001 12-13 23.558376537562264 22.685396970621124 24.627998881772896 29.128227610043712 14-15 25.207286312432096 24.203416967933364 21.445635392112635 29.1436613275219 16-17 25.943586534215633 25.24310397956688 21.847749084289813 26.96556040192768 18-19 23.010013469896055 25.17282130785066 23.964025211579028 27.85314001067426 20-21 24.793191521805426 24.133056317983126 23.84333384161838 27.23041831859307 22-23 26.229747760340555 23.929411017218374 22.647563377597052 27.193277844844015 24-25 23.045838800166468 27.319022673194038 21.93044599827815 27.704692528361345 26-27 24.02861653901259 27.32326713958505 23.24617276028248 25.401943561119882 28-29 23.10769123239537 26.752043614043668 24.446167091856996 25.694098061703958 30-31 23.80409299134004 26.171127955219802 24.22628994033966 25.79848911310049 32-33 22.25660216720725 27.33279751447823 24.27322949460422 26.137370823710306 34-35 22.07432022441569 27.99763639193959 24.08338707576571 25.84465630787901 36-37 24.50751124780763 24.949162451386595 24.35976462214992 26.183561678655852 38-39 24.466415468391588 24.50549310899167 25.613328334784185 25.414763087832558 40-41 22.54918467642789 25.992509125333964 25.088076547971145 26.370229650267007 42-43 21.042883782693362 25.184175664986135 26.076542103875394 27.69639844844511 44-45 20.759284556978113 23.339263589287416 27.81808939860851 28.083362455125965 46-47 21.603504747865923 24.636484069472285 26.84791897653229 26.912092206129497 48-49 21.665083565503853 25.011833548825702 26.487770940616233 26.83531194505421 50-51 23.577401072508707 24.915177777213003 25.027956388034667 26.479464762243627 52-53 19.142811755361397 26.704368546465453 26.20810166799047 27.944718030182685 54-55 19.974329974202895 25.119772273830556 25.87652971750264 29.029368034463914 56-57 20.54114679146849 25.8992371456985 25.108740893248054 28.45087516958496 58-59 20.4331788157322 25.654899394108842 25.489685235255433 28.422236554903524 60-61 19.5928340832253 25.10358677139734 25.65297796080226 29.650601184575105 62-63 20.42840621703712 25.346308793066196 24.970770267007257 29.254514722889425 64-65 21.508577820004003 24.536155852904447 24.301969768705494 29.653296558386057 66-67 20.2618802506323 27.29026067284351 22.88989717975115 29.557961896773044 68-69 20.727930034341117 28.25374940832256 22.271533087873234 28.746787469463094 70-71 21.461519400728125 28.602651994078442 21.768716127351627 28.167112477841812 72-73 22.029132845138435 28.70681301923657 21.483646529950914 27.780407605674075 74-75 23.12829424977681 28.662475020095123 21.415522647917573 26.793708082210493 76 22.40167736196709 28.9802401677362 21.859076180189337 26.75900629010738 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 1.5 11 2.0 12 1.0 13 0.5 14 2.5 15 9.5 16 17.0 17 20.0 18 23.5 19 31.0 20 40.5 21 46.0 22 76.0 23 131.5 24 218.0 25 279.0 26 319.0 27 474.5 28 667.5 29 745.0 30 845.0 31 1062.5 32 1456.0 33 1732.0 34 2036.0 35 2667.0 36 3376.0 37 3758.0 38 4249.5 39 5129.5 40 6077.5 41 6994.5 42 7352.0 43 7642.5 44 8376.5 45 8798.5 46 8777.0 47 8855.5 48 8874.5 49 8684.5 50 8554.0 51 8157.5 52 7416.0 53 6640.5 54 6210.0 55 5942.0 56 5345.5 57 4679.0 58 4341.0 59 4076.0 60 3552.5 61 3065.5 62 2837.0 63 2678.5 64 2359.0 65 2098.0 66 1917.0 67 1836.0 68 1744.0 69 1546.0 70 1330.0 71 1220.0 72 1164.0 73 1088.0 74 969.0 75 870.0 76 822.5 77 735.5 78 617.5 79 539.0 80 523.0 81 453.5 82 352.0 83 304.0 84 276.5 85 199.5 86 132.0 87 114.0 88 103.5 89 81.5 90 55.5 91 38.0 92 35.0 93 27.5 94 17.5 95 15.5 96 16.0 97 12.5 98 9.0 99 8.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.001906068923452272 2 0.0 3 0.0 4 0.0 5 0.0 6 0.001906068923452272 7 0.0044474941547219685 8 0.00317678153908712 9 0.006988919385991664 10-11 0.001906068923452272 12-13 0.0 14-15 6.35356307817424E-4 16-17 3.17678153908712E-4 18-19 0.002541425231269696 20-21 0.0 22-23 0.001270712615634848 24-25 0.0022237470773609842 26-27 3.17678153908712E-4 28-29 0.007306597539900376 30-31 6.35356307817424E-4 32-33 3.17678153908712E-4 34-35 0.003494459692995832 36-37 0.017789976618887874 38-39 0.008259632001626513 40-41 3.17678153908712E-4 42-43 9.53034461726136E-4 44-45 0.0044474941547219685 46-47 0.003494459692995832 48-49 3.17678153908712E-4 50-51 0.002541425231269696 52-53 0.010801057232896209 54-55 0.00635356307817424 56-57 0.014295516925892041 58-59 0.013024804310257192 60-61 0.022872827081427266 62-63 0.011436413540713633 64-65 0.024461217850970822 66-67 0.01906068923452272 68-69 3.17678153908712E-4 70-71 6.35356307817424E-4 72-73 0.006035884924265529 74-75 0.009848022771170072 76 0.001270712615634848 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 157392.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 66.8572340521874 #Duplication Level Percentage of deduplicated Percentage of total 1 78.70503087533682 52.6200067031703 2 9.417170257913726 12.592119120852718 3 5.412045430019545 10.855031640476637 4 2.9672913559260183 7.935395707367131 5 1.53046087633612 5.11611905084599 6 0.7302587776666248 2.9293849210273093 7 0.4375554630841578 2.0477623604361543 8 0.22976654558171944 1.2289244572255678 9 0.14185586591685254 0.853568174635085 >10 0.42856455221841094 3.821687863963107 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00317678153908712 0.0 2 0.0 0.0 0.0 0.003812137846904544 0.0 3 0.0 0.0 0.0 0.0057182067703568165 0.0 4 0.0 0.0 0.0 0.00635356307817424 0.0 5 0.0 0.0 0.0 0.008259632001626513 0.0 6 0.0 0.0 0.0 0.008259632001626513 0.0 7 0.0 0.0 0.0 0.008259632001626513 0.0 8 0.0 0.0 0.0 0.008259632001626513 0.0 9 0.0 0.0 0.0 0.01270712615634848 0.0 10 0.0 0.0 0.0 0.013342482464165905 0.0 11 0.0 0.0 0.0 0.013342482464165905 0.0 12 0.0 0.0 0.0 0.016519264003253025 0.0 13 0.0 0.0 0.0 0.01715462031107045 0.0 14 0.0 0.0 0.0 0.02033140185015757 0.0 15 0.0 0.0 0.0 0.020966758157974993 0.0 16 0.0 0.0 0.0 0.020966758157974993 0.0 17 0.0 0.0 0.0 0.020966758157974993 0.0 18 0.0 0.0 0.0 0.021602114465792417 0.0 19 0.0 0.0 0.0 0.02541425231269696 0.0 20 0.0 0.0 0.0 0.03494459692995832 0.0 21 0.0 0.0 0.0 0.03812137846904544 0.0 22 0.0 0.0 0.0 0.04892243570194165 0.0 23 0.0 0.0 0.0 0.0501931483175765 0.0 24 0.0 0.0 0.0 0.060994205550472705 0.0 25 0.0 0.0 0.0 0.06417098708955983 0.0 26 0.0 0.0 0.0 0.0686184812442818 0.0 27 0.0 0.0 0.0 0.10673985971332724 0.0 28 0.0 0.0 0.0 0.1429551692589204 0.0 29 0.0 0.0 0.0 0.18361797295923554 0.0 30 0.0 0.0 0.0 0.23126969604554234 0.0 31 0.0 0.0 0.0 0.2852749822100234 0.0 32 0.0 0.0 0.0 0.33165599268069534 0.0 33 0.0 0.0 0.0 0.3964623360780726 0.0 34 0.0 0.0 0.0 0.47778794347870285 0.0 35 0.0 0.0 0.0 0.6112127681203618 0.0 36 0.0 0.0 0.0 0.8304106943173731 0.0 37 0.0 0.0 0.0 1.2128951916234625 0.0 38 0.0 0.0 0.0 1.63032428585951 0.0 39 0.0 0.0 0.0 2.172283216427773 0.0 40 0.0 0.0 0.0 2.833689132865711 0.0 41 0.0 0.0 0.0 3.61581274778896 0.0 42 0.0 0.0 0.0 4.4614719934939515 0.0 43 0.0 0.0 0.0 5.38909220290739 0.0 44 0.0 0.0 0.0 6.184558300294805 0.0 45 0.0 0.0 0.0 7.053725729389042 0.0 46 0.0 0.0 0.0 7.851097895699908 0.0 47 0.0 0.0 0.0 8.570321236149233 0.0 48 0.0 0.0 0.0 9.31368811629562 0.0 49 0.0 0.0 0.0 10.00368506658534 0.0 50 0.0 0.0 0.0 10.7387923147301 0.0 51 0.0 0.0 0.0 11.513291653959541 0.0 52 0.0 0.0 0.0 12.338619497814374 0.0 53 0.0 0.0 0.0 13.101047067195283 0.0 54 0.0 0.0 0.0 13.8418725221104 0.0 55 0.0 0.0 0.0 14.573167632408255 0.0 56 0.0 0.0 0.0 15.271424214699604 0.0 57 0.0 0.0 0.0 15.966504015451866 0.0 58 0.0 0.0 0.0 16.595506760191114 0.0 59 0.0 0.0 0.0 17.13428890922029 0.0 60 0.0 0.0 0.0 17.686413540713634 0.0 61 0.0 0.0 0.0 18.239808884822608 0.0 62 0.0 0.0 0.0 18.826878113245908 0.0 63 0.0 0.0 0.0 19.43872623767409 0.0 64 0.0 0.0 0.0 20.06899969502897 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTGGA 20 7.907404E-5 70.0 46 ACGAGTG 20 7.907404E-5 70.0 24 AATGGCG 20 0.006940948 52.5 70 ATGGTTC 20 0.006940948 52.5 9 GACGATT 20 0.006940948 52.5 23 GGTTCTA 20 0.006940948 52.5 32 TCGAAAG 20 0.006940948 52.5 3 ACGTGTA 30 5.86386E-4 46.666668 34 CGACGAT 80 2.910383E-11 43.75 22 TCTCGGT 100 0.0 42.0 43 TAGATCT 150 0.0 41.999996 39 TCGGTGG 85 5.638867E-11 41.17647 45 TGGTCGC 85 5.638867E-11 41.17647 49 CGCCGTA 60 2.580764E-7 40.833336 53 AATATGC 35 0.0012524688 40.000004 46 GTTACAT 35 0.0012524688 40.000004 3 CGGTGGT 70 1.9101208E-8 40.000004 46 GACGATC 35 0.0012524688 40.000004 23 CTCGGTG 80 1.4078978E-9 39.375 44 GTAGATC 180 0.0 38.888885 38 >>END_MODULE