SRR1779808_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779808_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	157392
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	19803	12.581960963708447	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	2554	1.6227000101657008	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1357	0.8621785097082444	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	540	0.34309240622140896	Illumina PCR Primer Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	412	0.2617667988207787	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT	334	0.21220900681101965	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT	331	0.21030293788756738	No Hit
CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	189	0.12008234217749314	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTA	15	0.0022191673	70.017166	48
TCCGAAA	15	0.0022219676	69.99492	36
TCGGAGT	15	0.0022219676	69.99492	18
TCACGTA	15	0.0022219676	69.99492	25
CCTAGAT	25	2.3855337E-4	55.995934	3
ACGTAGG	25	2.3855337E-4	55.995934	27
ATCTCGT	2745	0.0	55.46045	37
TCTCGTA	2750	0.0	55.23235	38
GCCGTCT	2890	0.0	55.2209	46
GATCTCG	2740	0.0	55.178474	36
TGCCGTC	2895	0.0	55.125534	45
CCGTCTT	2885	0.0	55.07399	47
AGATCTC	2735	0.0	55.023426	35
CTCGTAT	2875	0.0	55.022095	39
TATGCCG	2910	0.0	54.84138	43
ATGCCGT	2905	0.0	54.815296	44
CGTATGC	2910	0.0	54.721115	41
TCGTATG	2910	0.0	54.721115	40
GTCTTCT	2905	0.0	54.591698	49
GTATGCC	2925	0.0	54.56014	42