##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779807_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 72676 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.615746601353955 32.0 21.0 34.0 12.0 34.0 2 26.70701469536023 32.0 21.0 34.0 12.0 34.0 3 26.28005118608619 32.0 21.0 34.0 11.0 34.0 4 26.40878694479608 32.0 21.0 34.0 12.0 34.0 5 26.456588144641973 33.0 21.0 34.0 11.0 34.0 6 29.379932852661128 35.0 21.0 38.0 11.0 38.0 7 29.508420936760416 36.0 21.0 38.0 12.0 38.0 8 28.78373878584402 35.0 21.0 38.0 11.0 38.0 9 29.65347570036876 36.0 21.0 38.0 11.0 38.0 10-11 28.513085475260056 34.0 21.0 38.0 11.0 38.0 12-13 29.065076503935273 35.0 21.0 38.0 11.0 38.0 14-15 28.041464857724694 34.0 21.0 38.0 11.0 38.0 16-17 28.43239859100666 34.5 21.0 38.0 11.0 38.0 18-19 28.836390280147505 35.0 21.0 38.0 11.0 38.0 20-21 28.240746601353955 33.0 21.0 38.0 11.0 38.0 22-23 28.75809070394628 35.0 21.0 38.0 11.0 38.0 24-25 28.980495624415212 35.0 21.0 38.0 11.0 38.0 26-27 28.079537949254224 34.0 21.0 38.0 11.0 38.0 28-29 28.76829352193296 35.0 21.0 38.0 11.0 38.0 30-31 29.048097033408553 36.5 21.0 38.0 11.0 38.0 32-33 29.228954537949257 36.5 21.0 38.0 11.0 38.0 34-35 29.288348285541307 36.5 21.0 38.0 11.0 38.0 36-37 28.90897270075403 35.5 21.0 38.0 11.0 38.0 38-39 28.771430733667238 35.5 21.0 38.0 11.0 38.0 40-41 28.730296108756672 35.5 21.0 38.0 11.0 38.0 42-43 29.087924486763168 36.5 21.0 38.0 11.0 38.0 44-45 29.173846937090648 36.0 21.0 38.0 11.0 38.0 46-47 29.054330177775334 36.0 21.0 38.0 11.0 38.0 48-49 28.792448676316802 35.5 21.0 38.0 11.0 38.0 50-51 28.33940365457648 35.0 18.0 38.0 11.0 38.0 52-53 28.798097033408553 35.0 21.0 38.0 11.0 38.0 54-55 28.847914029390722 35.5 21.0 38.0 11.0 38.0 56-57 28.801433760801366 36.0 21.0 38.0 11.0 38.0 58-59 28.962208982332545 36.0 21.0 38.0 11.0 38.0 60-61 28.991317628928396 36.0 21.0 38.0 11.0 38.0 62-63 28.86490725961803 36.0 21.0 38.0 11.0 38.0 64-65 28.89838461115086 36.0 21.0 38.0 11.0 38.0 66-67 29.000165116407068 36.0 21.0 38.0 11.0 38.0 68-69 28.46519483736034 34.0 21.0 38.0 11.0 38.0 70-71 28.582351808024658 34.0 21.0 38.0 11.0 38.0 72-73 28.557529308162252 35.0 20.0 38.0 11.0 38.0 74-75 28.392509218999393 35.0 19.0 38.0 11.0 38.0 76 27.68938851890583 34.0 17.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 29.0 13 401.0 14 1511.0 15 2974.0 16 3962.0 17 4466.0 18 4173.0 19 3538.0 20 2752.0 21 1920.0 22 1303.0 23 968.0 24 756.0 25 691.0 26 722.0 27 676.0 28 831.0 29 865.0 30 1084.0 31 1328.0 32 1686.0 33 2265.0 34 3191.0 35 4694.0 36 8583.0 37 17305.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.698937751114535 20.499201937365843 9.982662777257968 39.819197534261654 2 14.411910396829766 20.195112554350818 31.061148109417143 34.33182893940228 3 20.891353404149925 20.528097308602565 31.717485827508398 26.863063459739116 4 18.759975782926965 25.67009741868017 26.065000825582036 29.50492597281083 5 11.827838626231493 29.591612086520996 29.949364301832794 28.631184985414716 6 21.822710259797446 44.22198370761779 13.859533245266404 20.09577278731836 7 20.485475636773952 35.53824771917271 16.49901611371799 27.477260530335347 8 18.466280461794614 39.29932712286544 19.667551910613295 22.566840504726652 9 23.22691619650475 18.6046511627907 17.20379799091785 40.96463464978671 10-11 19.943721663031738 29.215199278976804 23.172502046797707 27.668577011193747 12-13 19.179646650888877 22.99933953437173 26.037481424404206 31.783532390335186 14-15 25.553827948703837 25.696240849799107 21.220898233254445 27.52903296824261 16-17 27.708099703476414 24.977468335271173 20.106500815267868 27.20793114598455 18-19 21.877536979704164 24.399724802201582 23.491572067423462 30.231166150670795 20-21 24.93188948208487 23.860008806208377 22.526693819142494 28.68140789256426 22-23 28.187910228007652 23.378008338722772 20.36106944807563 28.07301198519395 24-25 21.77394941794865 29.915788314940695 20.12617992679638 28.18408234031428 26-27 23.674940833287465 30.049810116131876 21.89993945731741 24.37530959326325 28-29 22.237818051713937 28.14886677950708 24.437518061346655 25.17579710743233 30-31 23.506384501073256 26.4193131157466 25.10663767956409 24.967664703616048 32-33 19.723154824151027 29.299906434035993 24.785348670812922 26.191590071000054 34-35 19.32603131794039 32.46759501334728 23.02061259872857 25.185761069983766 36-37 24.464490913719906 25.592276833942297 23.409642948069553 26.533589304268247 38-39 25.085662386987572 23.638690500763737 26.284935804813607 24.99071130743508 40-41 20.961672090319297 27.104732681577698 25.282935789915445 26.650659438187557 42-43 17.851835544058563 26.497743409103418 26.370466178655956 29.279954868182067 44-45 17.646856466638226 23.63188529440095 30.114347832069683 28.606910406891146 46-47 19.313514368863906 26.399218432875355 27.5179051799462 26.769362018314542 48-49 19.7032032582971 27.731300566899662 25.21602729924597 27.34946887555727 50-51 23.987423201029262 27.443978891893195 21.85941230297151 26.709185604106032 52-53 16.53800107336003 29.873123340076233 24.750581403349432 28.838294183214302 54-55 17.724279807077053 25.99093179582092 25.39028367379234 30.89450472330969 56-57 19.881511859135355 27.92797132064047 23.352897867626314 28.837618952597865 58-59 19.503904771734266 27.49165720576599 23.251109505624935 29.753328516874806 60-61 17.239338531308277 25.542793831247035 24.782366340244852 32.435501297199835 62-63 19.529379386266683 26.16691894867208 23.172560891702215 31.13114077335902 64-65 19.918388692774027 25.65113574589019 22.786482525133668 31.64399303620212 66-67 17.814478392513074 31.225571153316817 20.514726121662537 30.44522433250757 68-69 19.24569321371567 33.098959766635474 19.50850349496395 28.1468435246849 70-71 19.478232153668337 34.30637349331278 18.773047498486434 27.442346854532445 72-73 20.620024905572105 33.33218666795093 19.25985042896752 26.78793799750944 74-75 22.540938489060135 32.61593504885097 18.53997523049401 26.303151231594878 76 20.112554350817327 32.87742858715394 20.336837470416643 26.673179591612083 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.0 14 2.0 15 6.0 16 15.0 17 21.0 18 21.5 19 22.0 20 28.5 21 35.0 22 48.5 23 84.0 24 137.5 25 169.0 26 205.0 27 261.5 28 339.5 29 397.0 30 429.5 31 532.0 32 685.0 33 768.0 34 908.0 35 1188.5 36 1474.0 37 1619.0 38 1870.0 39 2343.0 40 2740.5 41 3095.0 42 3274.0 43 3393.5 44 3772.5 45 4129.5 46 4227.0 47 4304.0 48 4352.0 49 4240.5 50 4158.0 51 4081.5 52 3852.5 53 3475.0 54 3250.0 55 3055.5 56 2720.5 57 2414.5 58 2249.0 59 2123.5 60 1771.5 61 1454.0 62 1363.0 63 1282.5 64 1080.5 65 871.0 66 688.0 67 593.0 68 580.0 69 510.0 70 407.5 71 362.0 72 353.5 73 280.0 74 196.0 75 177.0 76 163.0 77 148.0 78 124.0 79 101.0 80 97.5 81 81.5 82 56.0 83 43.0 84 46.5 85 38.5 86 21.5 87 16.0 88 15.0 89 14.5 90 9.5 91 6.0 92 8.0 93 5.5 94 4.5 95 3.5 96 1.0 97 1.5 98 4.0 99 5.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0055038802355660745 7 0.006879850294457592 8 0.0041279101766745555 9 0.008255820353349111 10-11 0.0020639550883372777 12-13 0.0 14-15 0.0 16-17 6.879850294457593E-4 18-19 0.0013759700588915186 20-21 0.0 22-23 0.0041279101766745555 24-25 0.0027519401177830373 26-27 0.0 28-29 0.00963179041224063 30-31 0.0 32-33 0.0 34-35 0.0027519401177830373 36-37 0.01582365567725246 38-39 0.00963179041224063 40-41 6.879850294457593E-4 42-43 0.0 44-45 0.0041279101766745555 46-47 0.0020639550883372777 48-49 0.0 50-51 0.003439925147228796 52-53 0.00963179041224063 54-55 0.006191865265011833 56-57 0.014447685618360944 58-59 0.011695745500577908 60-61 0.02683141614838461 62-63 0.008255820353349111 64-65 0.01995156585392702 66-67 0.022015520942264298 68-69 0.0 70-71 0.0 72-73 0.0020639550883372777 74-75 0.008255820353349111 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 72676.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.15234740492046 #Duplication Level Percentage of deduplicated Percentage of total 1 87.04707912250431 68.02933568165557 2 6.005493151167294 9.38686774175794 3 3.304693827247438 7.7480874016181405 4 1.7394978696432972 5.4378336727392815 5 0.8591851825768514 3.357366943695305 6 0.4648050987710835 2.179536573284165 7 0.23768442550794042 1.300291705652485 8 0.15493503292369448 0.968682921459629 9 0.0669037642170499 0.4705817601408993 >10 0.11972252544103666 1.1214155979965876 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01788761076558974 0.0 2 0.0 0.0 0.0 0.01788761076558974 0.0 3 0.0 0.0 0.0 0.01788761076558974 0.0 4 0.0 0.0 0.0 0.01926358082448126 0.0 5 0.0 0.0 0.0 0.02751940117783037 0.0 6 0.0 0.0 0.0 0.02751940117783037 0.0 7 0.0 0.0 0.0 0.02751940117783037 0.0 8 0.0 0.0 0.0 0.028895371236721888 0.0 9 0.0 0.0 0.0 0.028895371236721888 0.0 10 0.0 0.0 0.0 0.03164731135450492 0.0 11 0.0 0.0 0.0 0.034399251472287964 0.0 12 0.0 0.0 0.0 0.03577522153117948 0.0 13 0.0 0.0 0.0 0.03577522153117948 0.0 14 0.0 0.0 0.0 0.037151191590071 0.0 15 0.0 0.0 0.0 0.03852716164896252 0.0 16 0.0 0.0 0.0 0.03852716164896252 0.0 17 0.0 0.0 0.0 0.03852716164896252 0.0 18 0.0 0.0 0.0 0.041279101766745555 0.0 19 0.0 0.0 0.0 0.04540701194342011 0.0 20 0.0 0.0 0.0 0.050910892178986186 0.0 21 0.0 0.0 0.0 0.06742253288568441 0.0 22 0.0 0.0 0.0 0.08668611371016567 0.0 23 0.0 0.0 0.0 0.0963179041224063 0.0 24 0.0 0.0 0.0 0.11970939512356212 0.0 25 0.0 0.0 0.0 0.12521327535912818 0.0 26 0.0 0.0 0.0 0.12521327535912818 0.0 27 0.0 0.0 0.0 0.13484506577136882 0.0 28 0.0 0.0 0.0 0.15135670647806704 0.0 29 0.0 0.0 0.0 0.18713192800924652 0.0 30 0.0 0.0 0.0 0.21602729924596842 0.0 31 0.0 0.0 0.0 0.24354670042379878 0.0 32 0.0 0.0 0.0 0.2862017722494358 0.0 33 0.0 0.0 0.0 0.31784908360394076 0.0 34 0.0 0.0013759700588915184 0.0 0.39765534701964883 0.0 35 0.0 0.0013759700588915184 0.0 0.4733337002586824 0.0 36 0.0 0.0013759700588915184 0.0 0.6384501073256645 0.0 37 0.0 0.0013759700588915184 0.0 0.9246518795751004 0.0 38 0.0 0.0013759700588915184 0.0 1.2149815620012108 0.0 39 0.0 0.0013759700588915184 0.0 1.64015631019869 0.0 40 0.0 0.0013759700588915184 0.0 2.0240519566294237 0.0 41 0.0 0.0013759700588915184 0.0 2.4987616269469974 0.0 42 0.0 0.0013759700588915184 0.0 3.038141890032473 0.0 43 0.0 0.0013759700588915184 0.0 3.5114755902911554 0.0 44 0.0 0.0013759700588915184 0.0 4.05085585337663 0.0 45 0.0 0.0013759700588915184 0.0 4.5503329847542515 0.0 46 0.0 0.0013759700588915184 0.0 5.150255930430954 0.0 47 0.0 0.0013759700588915184 0.0 5.630469480984094 0.0 48 0.0 0.0013759700588915184 0.0 6.113434971655017 0.0 49 0.0 0.0013759700588915184 0.0 6.573008971324784 0.0 50 0.0 0.0013759700588915184 0.0 7.1165171445869335 0.0 51 0.0 0.0013759700588915184 0.0 7.53893995266663 0.0 52 0.0 0.0013759700588915184 0.0 8.065936485222082 0.0 53 0.0 0.0013759700588915184 0.0 8.564037646540811 0.0 54 0.0 0.0013759700588915184 0.0 9.026363586328362 0.0 55 0.0 0.0013759700588915184 0.0 9.513456987175958 0.0 56 0.0 0.0013759700588915184 0.0 10.01155814849469 0.0 57 0.0 0.0013759700588915184 0.0 10.377566184159832 0.0 58 0.0 0.0013759700588915184 0.0 10.790357201827288 0.0 59 0.0 0.0013759700588915184 0.0 11.203148219494743 0.0 60 0.0 0.0013759700588915184 0.0 11.648962518575596 0.0 61 0.0 0.0013759700588915184 0.0 11.992955033298475 0.0 62 0.0 0.0013759700588915184 0.0 12.441521272497111 0.0 63 0.0 0.0013759700588915184 0.0 12.822664978810062 0.0 64 0.0 0.0013759700588915184 0.0 13.133634212119544 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCAAT 15 0.0022165016 70.0 2 TCGATGA 15 0.0022165016 70.0 18 TGCCGCG 15 0.0022165016 70.0 19 CTCGGTG 45 3.765308E-10 62.222225 44 ACGATCT 30 8.301671E-6 58.333332 24 AGTGTAG 85 0.0 57.64706 35 GCGGTGA 25 2.3761067E-4 55.999996 20 TCGGCGG 25 2.3761067E-4 55.999996 45 CAGTGTA 25 2.3761067E-4 55.999996 34 CGGTCGT 25 2.3761067E-4 55.999996 10 CCTTGTG 25 2.3761067E-4 55.999996 32 TCGGTGG 70 0.0 55.000004 45 ATCTCGG 65 3.6379788E-12 53.846153 42 GGAGCGG 20 0.0069259834 52.5 4 TTAGCGA 20 0.0069259834 52.5 15 GGGTCGC 20 0.0069259834 52.5 49 TTCACCG 20 0.0069259834 52.5 62 GGTGGTC 40 7.3868614E-7 52.5 47 GGCGGTC 20 0.0069259834 52.5 47 CGGTGGT 40 7.3868614E-7 52.5 46 >>END_MODULE