##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779806_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 156758 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.54468671455364 34.0 23.0 34.0 12.0 34.0 2 29.112364281248805 34.0 24.0 34.0 12.0 34.0 3 28.82950790390283 34.0 23.0 34.0 11.0 34.0 4 29.153548782199312 34.0 24.0 34.0 12.0 34.0 5 29.541107949833503 34.0 31.0 34.0 11.0 34.0 6 32.20520164840072 37.0 31.0 38.0 12.0 38.0 7 32.13541892598783 37.0 28.0 38.0 12.0 38.0 8 31.465437170670715 37.0 27.0 38.0 11.0 38.0 9 32.39329412215007 37.0 31.0 38.0 12.0 38.0 10-11 31.09707319562638 37.0 26.0 38.0 11.0 38.0 12-13 31.86592709781957 37.0 27.5 38.0 11.0 38.0 14-15 30.70025134283418 37.0 25.5 38.0 11.0 38.0 16-17 31.277092716161217 37.0 26.5 38.0 11.0 38.0 18-19 32.01239809132548 37.0 31.0 38.0 11.0 38.0 20-21 30.925152145345052 36.5 25.5 38.0 11.0 38.0 22-23 31.707488613021347 37.0 28.5 38.0 11.0 38.0 24-25 32.013252912132074 37.0 29.5 38.0 11.0 38.0 26-27 30.95793835083377 37.0 25.0 38.0 11.0 38.0 28-29 32.016975210196605 37.5 29.0 38.0 11.0 38.0 30-31 32.344409854680464 38.0 31.0 38.0 11.0 38.0 32-33 32.47551640107682 38.0 31.5 38.0 11.0 38.0 34-35 32.43683575957846 38.0 31.5 38.0 11.0 38.0 36-37 32.002695237244666 38.0 29.0 38.0 11.0 38.0 38-39 31.931831230304034 37.5 29.0 38.0 11.0 38.0 40-41 31.9244472371426 37.5 29.0 38.0 11.0 38.0 42-43 32.27576901976295 38.0 31.5 38.0 11.0 38.0 44-45 32.38181464422868 38.0 31.0 38.0 11.0 38.0 46-47 32.27936692226234 38.0 31.0 38.0 11.0 38.0 48-49 32.017077278352616 37.5 29.0 38.0 11.0 38.0 50-51 31.458174383444543 37.0 28.0 38.0 11.0 38.0 52-53 31.992408680896666 37.0 29.0 38.0 11.0 38.0 54-55 32.08071039436584 37.5 30.0 38.0 11.0 38.0 56-57 32.121971446433356 38.0 31.0 38.0 11.0 38.0 58-59 32.31827721711173 38.0 31.0 38.0 11.0 38.0 60-61 32.253438421005626 38.0 31.0 38.0 11.0 38.0 62-63 32.21141823702777 38.0 31.0 38.0 11.0 38.0 64-65 32.24349634468416 38.0 31.0 38.0 11.0 38.0 66-67 32.16583204684929 38.0 31.0 38.0 11.0 38.0 68-69 31.6241914288266 37.0 27.0 38.0 11.0 38.0 70-71 31.724811492874366 37.0 27.5 38.0 11.0 38.0 72-73 31.82697852741168 37.0 28.5 38.0 11.0 38.0 74-75 31.835616045114126 37.0 29.0 38.0 11.0 38.0 76 30.975854501843607 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 23.0 13 413.0 14 1739.0 15 3368.0 16 4598.0 17 5100.0 18 5214.0 19 4465.0 20 3420.0 21 2556.0 22 1848.0 23 1502.0 24 1275.0 25 1308.0 26 1410.0 27 1561.0 28 1785.0 29 2245.0 30 2814.0 31 3468.0 32 4500.0 33 6095.0 34 8445.0 35 12896.0 36 23656.0 37 51053.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.41627221577208 23.98665458860154 9.350081016598834 29.246992179027547 2 18.581507801834675 27.243904617308207 29.35926715063984 24.815320430217277 3 16.7972288495643 22.484976843287104 33.708008522691024 27.009785784457573 4 12.641779047959275 22.59151048112377 30.580257466923538 34.186453003993414 5 12.955638627693641 32.70327511195601 35.901835950956254 18.439250309394097 6 24.705116836887665 41.922848740407126 16.09369916494957 17.278335257755632 7 24.97097288676236 28.626475279106856 19.051355661881978 27.351196172248805 8 21.928128967228698 36.19260875389945 20.238209157081524 21.641053121790332 9 22.779092689586538 18.897728215172027 19.08656514555117 39.236613949690266 10-11 21.91005680857647 26.949784535691162 24.605992172473517 26.534166483258854 12-13 21.98484287883234 23.43771928705393 25.84429502800495 28.73314280610878 14-15 24.266143565698613 25.520628997017685 22.414876481189097 27.798350956094602 16-17 24.973845035022137 26.34666173337246 22.792457163270775 25.88703606833463 18-19 21.43381156822343 26.566277741982812 25.098719674400506 26.90119101539325 20-21 23.670562267954427 25.784011023360847 24.352186172316564 26.19324053636816 22-23 25.321518793539006 25.203182015361453 23.228456964964657 26.246842226134888 24-25 21.32754936046697 28.917099933016488 23.108034831424835 26.647315875091703 26-27 22.99858061017814 28.792880723410363 24.24094540931056 23.967593257100937 28-29 22.006909157025426 27.767410852416454 25.853197957237228 24.372482033320892 30-31 22.68464767348397 27.04519067607395 25.51257352096863 24.757588129473458 32-33 21.009521075546626 28.63977800105258 25.034846817536643 25.315854105864155 34-35 20.77318107875347 29.3116646996906 24.89170999330165 25.02344422825428 36-37 23.72945158501533 25.947866920600895 24.786022133111302 25.53665936127248 38-39 23.33515153255055 25.57121758740913 26.506154763841437 24.58747611619888 40-41 21.592268312520932 26.891536290129658 26.064462625392725 25.451732771956685 42-43 19.726966811795286 26.236065260035407 26.88228633398721 27.154681594182094 44-45 19.334496518419048 25.056537812552833 28.688354645988767 26.92061102303936 46-47 20.578037632093498 25.894631414090185 27.336057338066848 26.191273615749466 48-49 20.369041353683237 26.392357622442308 27.097268073297933 26.14133295057653 50-51 22.85710640388118 26.18966358651794 25.601490209337413 25.351739800263466 52-53 18.265421347776993 27.56161202447256 26.806254665161056 27.366711962589395 54-55 18.91365995412976 26.27427087686168 26.618776176820536 28.193292992188024 56-57 19.691208370549955 27.18514737782315 25.767194079367105 27.356450172259795 58-59 19.450496518152498 27.054417623922188 25.484635530475337 28.010450327449977 60-61 18.344494035750404 25.98715588720406 26.385942300391445 29.282407776654086 62-63 19.338713793543448 26.370422355493172 25.811216026540766 28.47964782442261 64-65 20.009379396592152 25.385943028141376 25.182722768644737 29.421954806621724 66-67 18.99232472230552 28.598863063603364 23.415339071182935 28.993473142908183 68-69 19.859655837838698 29.657273176722004 22.635599572588234 27.84747141285106 70-71 20.33555013316747 30.13827089612937 22.300687367430587 27.225491603272573 72-73 21.167918136638832 30.05601311651111 21.945275567946208 26.83079317890385 74-75 22.22062731062817 29.810492604394938 21.66304621734817 26.30583386762872 76 21.28849932378984 29.984817168082877 22.37043558141315 26.356247926714126 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 1.5 15 2.5 16 12.5 17 23.0 18 20.5 19 22.5 20 33.5 21 40.0 22 62.0 23 123.0 24 235.5 25 309.0 26 360.5 27 496.5 28 676.5 29 772.0 30 935.5 31 1420.5 32 1902.5 33 2063.0 34 2389.5 35 3120.5 36 3932.5 37 4340.0 38 4844.5 39 5997.5 40 7045.0 41 8041.0 42 8638.0 43 8845.0 44 9487.0 45 10009.0 46 10096.0 47 10147.0 48 9928.5 49 9190.5 50 8722.0 51 8437.5 52 7633.5 53 6600.0 54 6086.0 55 5685.5 56 4856.0 57 3941.0 58 3455.0 59 3053.5 60 2520.5 61 2132.0 62 1875.0 63 1824.0 64 1584.0 65 1297.0 66 1112.5 67 1026.0 68 972.0 69 908.5 70 792.5 71 686.0 72 689.5 73 644.5 74 555.5 75 515.0 76 462.0 77 377.0 78 318.0 79 291.0 80 238.0 81 178.5 82 178.5 83 185.0 84 151.0 85 102.0 86 69.0 87 51.0 88 42.5 89 31.5 90 22.5 91 16.0 92 16.0 93 15.5 94 11.0 95 5.5 96 4.0 97 5.0 98 5.0 99 4.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 6.379259750698529E-4 7 0.005103407800558823 8 0.0031896298753492642 9 0.005741333775628676 10-11 0.002232740912744485 12-13 0.0 14-15 3.1896298753492645E-4 16-17 0.0 18-19 6.379259750698529E-4 20-21 0.0 22-23 0.0012758519501397058 24-25 0.0019137779252095587 26-27 3.1896298753492645E-4 28-29 0.006060296763163602 30-31 0.0 32-33 3.1896298753492645E-4 34-35 0.0019137779252095587 36-37 0.015629186389211396 38-39 0.006060296763163602 40-41 3.1896298753492645E-4 42-43 3.1896298753492645E-4 44-45 0.002870666887814338 46-47 0.002232740912744485 48-49 3.1896298753492645E-4 50-51 9.568889626047793E-4 52-53 0.007017185725768382 54-55 0.007336148713303308 56-57 0.011482667551257352 58-59 0.010525778588652572 60-61 0.020732594189770217 62-63 0.011482667551257352 64-65 0.020094668214700368 66-67 0.01339644547646691 68-69 3.1896298753492645E-4 70-71 3.1896298753492645E-4 72-73 0.005741333775628676 74-75 0.006060296763163602 76 0.0012758519501397058 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 156758.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.42095110539353 #Duplication Level Percentage of deduplicated Percentage of total 1 80.65099908081355 51.95614068386227 2 7.18499991811193 9.257290568338902 3 4.566999947949504 8.826314410355693 4 2.8710010894362377 7.398104832244136 5 1.770999997112882 5.704475211083052 6 1.0289999885234693 3.977349476887255 7 0.5169999941108566 2.3313941939472964 8 0.35699999593129433 1.839862342601248 9 0.2509999971393321 1.4552692688850146 >10 0.8009999908709333 7.253799011795131 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0031896298753492647 0.0 2 0.0 0.0 0.0 0.005741333775628676 0.0 3 0.0 0.0 0.0 0.005741333775628676 0.0 4 0.0 0.0 0.0 0.007655111700838235 0.0 5 0.0 0.0 0.0 0.00893096365097794 0.0 6 0.0 0.0 0.0 0.00893096365097794 0.0 7 0.0 0.0 0.0 0.010844741576187499 0.0 8 0.0 0.0 0.0 0.010844741576187499 0.0 9 0.0 0.0 0.0 0.010844741576187499 0.0 10 0.0 0.0 0.0 0.010844741576187499 0.0 11 0.0 0.0 0.0 0.012758519501397059 0.0 12 0.0 0.0 0.0 0.013396445476466911 0.0 13 0.0 0.0 0.0 0.014672297426606617 0.0 14 0.0 0.0 0.0 0.016586075351816176 0.0 15 0.0 0.0 0.0 0.017224001326886028 0.0 16 0.0 0.0 0.0 0.019137779252095588 0.0 17 0.0 0.0 0.0 0.019137779252095588 0.0 18 0.0 0.0 0.0 0.023603261077584557 0.0 19 0.0 0.0 0.0 0.023603261077584557 0.0 20 0.0 0.0 0.0 0.02424118705265441 0.0 21 0.0 0.0 0.0 0.02424118705265441 0.0 22 0.0 0.0 0.0 0.04401689227981985 0.0 23 0.0 0.0 0.0 0.044654818254889705 0.0 24 0.0 0.0 0.0 0.051034078005588235 0.0 25 0.0 0.0 0.0 0.05230992995572794 0.0 26 0.0 0.0 0.0 0.05230992995572794 0.0 27 0.0 0.0 0.0 0.07655111700838235 0.0 28 0.0 0.0 0.0 0.0988785261358272 0.0 29 0.0 0.0 0.0 0.13970578854029778 0.0 30 0.0 0.0 0.0 0.19010194057081617 0.0 31 0.0 0.0 0.0 0.23220505492542645 0.0 32 0.0 0.0 0.0 0.2711185394046875 0.0 33 0.0 0.0 0.0 0.3291698031360441 0.0 34 0.0 0.0 0.0 0.3993416603937279 0.0 35 0.0 0.0 0.0 0.49439263067913597 0.0 36 0.0 0.0 0.0 0.6921496829507904 0.0 37 0.0 0.0 0.0 1.0449227471644191 0.0 38 0.0 0.0 0.0 1.4646780387603822 0.0 39 0.0 0.0 0.0 1.999260005868919 0.0 40 0.0 0.0 0.0 2.633358425088353 0.0 41 0.0 0.0 0.0 3.386749001645849 0.0 42 0.0 0.0 0.0 4.144605060028835 0.0 43 0.0 0.0 0.0 4.934357417165312 0.0 44 0.0 0.0 0.0 5.701782365174346 0.0 45 0.0 0.0 0.0 6.457086719657051 0.0 46 0.0 0.0 0.0 7.218770333890455 0.0 47 0.0 0.0 0.0 8.039143137830287 0.0 48 0.0 0.0 0.0 8.833360976792253 0.0 49 0.0 0.0 0.0 9.573355107873283 0.0 50 0.0 0.0 0.0 10.249556641447326 0.0 51 0.0 0.0 0.0 10.960206177675143 0.0 52 0.0 0.0 0.0 11.75569986858725 0.0 53 0.0 0.0 0.0 12.509090445144745 0.0 54 0.0 0.0 0.0 13.241429464524936 0.0 55 0.0 0.0 0.0 14.034371451536764 0.0 56 0.0 0.0 0.0 14.607866903124561 0.0 57 0.0 0.0 0.0 15.251534211970043 0.0 58 0.0 0.0 0.0 15.849908776585565 0.0 59 0.0 0.0 0.0 16.47380038020388 0.0 60 0.0 0.0 0.0 17.062606055193356 0.0 61 0.0 0.0 0.0 17.713290549764604 0.0 62 0.0 0.0 0.0 18.287423927327474 0.0 63 0.0 0.0 0.0 18.927901606297606 0.0 64 6.379259750698529E-4 0.0 0.0 19.4739662409574 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAGGTGC 15 0.002221312 70.0 28 AGTCCAT 35 2.9592957E-7 60.000004 21 TAGTCCA 30 8.346518E-6 58.333332 20 TGGTCGC 55 3.45608E-11 57.27273 49 TCGCCGT 25 2.3846503E-4 55.999996 52 CTTCCGA 45 2.683555E-8 54.444447 18 GATCGCT 20 0.0069408985 52.5 43 CGAATTT 20 0.0069408985 52.5 18 GGCGGTC 20 0.0069408985 52.5 47 GGCATGC 20 0.0069408985 52.5 25 ATTGCGG 20 0.0069408985 52.5 3 TCGAATT 20 0.0069408985 52.5 17 GCCGTAT 20 0.0069408985 52.5 54 AGGTCCA 20 0.0069408985 52.5 11 ATCGTCA 35 2.0791555E-5 50.000004 7 TTACGCT 35 2.0791555E-5 50.000004 13 GATCTCG 85 0.0 49.411766 41 TTTACGG 30 5.8637926E-4 46.666664 36 TACGGAC 30 5.8637926E-4 46.666664 38 GTAGATC 100 0.0 45.499996 38 >>END_MODULE