SRR1779806_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779806_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	156758
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	23464	14.968295079039029	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	3156	2.0132943773204555	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	1971	1.25735209686268	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	610	0.3891348447926103	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	491	0.3132216537592978	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	258	0.16458490156802202	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTAACTCGTATGCCGT	237	0.15118845609155515	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	209	0.13332652878959925	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGTAA	15	0.002221673	69.99713	50
GCTGATA	15	0.002221673	69.99713	17
CGCAAGC	15	0.002221673	69.99713	70
TCGCGGA	15	0.002221673	69.99713	18
AACTCGT	55	3.45608E-11	57.27038	37
AATCCAT	25	2.3851328E-4	55.997707	68
ACGCCAA	25	2.3851328E-4	55.997707	61
CAACCGA	25	2.3851328E-4	55.997707	39
CCGTATG	25	2.3851328E-4	55.997707	2
TACGCCA	25	2.3851328E-4	55.997707	60
TACCTCG	25	2.3851328E-4	55.997707	36
GGAATTC	20	0.0069332677	52.5146	56
TAACGAC	20	0.0069332677	52.5146	54
TATGATC	20	0.0069332677	52.5146	52
AACGTTA	20	0.006942024	52.49785	70
GCAACCC	20	0.006942024	52.49785	27
GACAACG	20	0.006942024	52.49785	13
ACATTCG	20	0.006942024	52.49785	10
CCGTCAC	20	0.006942024	52.49785	13
GCAATCT	20	0.006942024	52.49785	40