##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779806_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 156758 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.62408936067059 34.0 34.0 34.0 34.0 34.0 2 33.687269549241506 34.0 34.0 34.0 34.0 34.0 3 33.79458145676776 34.0 34.0 34.0 34.0 34.0 4 33.62151213973131 34.0 34.0 34.0 34.0 34.0 5 33.65335102514704 34.0 34.0 34.0 34.0 34.0 6 37.364185559907625 38.0 38.0 38.0 37.0 38.0 7 37.407366769160106 38.0 38.0 38.0 37.0 38.0 8 37.3282958445502 38.0 38.0 38.0 37.0 38.0 9 37.2492887125378 38.0 38.0 38.0 36.0 38.0 10-11 37.199744191684 38.0 38.0 38.0 36.5 38.0 12-13 37.34037816251802 38.0 38.0 38.0 36.5 38.0 14-15 37.35807741869633 38.0 38.0 38.0 37.0 38.0 16-17 37.29090381352148 38.0 38.0 38.0 36.0 38.0 18-19 37.16141121984205 38.0 38.0 38.0 36.0 38.0 20-21 37.17877556488345 38.0 38.0 38.0 36.0 38.0 22-23 37.18710687811786 38.0 38.0 38.0 36.0 38.0 24-25 37.34329348422409 38.0 38.0 38.0 36.5 38.0 26-27 37.2509441304431 38.0 38.0 38.0 36.0 38.0 28-29 36.80950573495451 38.0 37.5 38.0 35.0 38.0 30-31 37.08041694841731 38.0 38.0 38.0 36.0 38.0 32-33 37.15808762551194 38.0 38.0 38.0 36.0 38.0 34-35 37.07629594661836 38.0 38.0 38.0 36.0 38.0 36-37 37.04561489684737 38.0 38.0 38.0 36.0 38.0 38-39 36.49694433457941 38.0 37.0 38.0 34.0 38.0 40-41 36.90372102221258 38.0 37.5 38.0 35.5 38.0 42-43 37.24976715701909 38.0 38.0 38.0 36.5 38.0 44-45 37.041953201750474 38.0 38.0 38.0 35.5 38.0 46-47 37.156521517243135 38.0 38.0 38.0 36.0 38.0 48-49 36.829163423876295 38.0 37.5 38.0 35.0 38.0 50-51 36.97376529427525 38.0 37.5 38.0 35.5 38.0 52-53 36.900729149389505 38.0 38.0 38.0 35.5 38.0 54-55 36.90965373378073 38.0 38.0 38.0 35.5 38.0 56-57 36.787060309521685 38.0 37.0 38.0 35.0 38.0 58-59 36.86122239375343 38.0 37.5 38.0 35.5 38.0 60-61 36.54420508044247 38.0 37.0 38.0 34.0 38.0 62-63 36.41413197412572 38.0 37.0 38.0 34.0 38.0 64-65 36.78710815396981 38.0 37.0 38.0 34.5 38.0 66-67 36.568200665994716 38.0 37.0 38.0 34.5 38.0 68-69 36.590154888426746 38.0 37.0 38.0 34.0 38.0 70-71 35.46198599114559 38.0 36.5 38.0 28.5 38.0 72-73 33.33089539289861 38.0 34.0 38.0 20.0 38.0 74-75 32.961998749665085 38.0 34.0 38.0 11.0 38.0 76 32.76729098355427 38.0 33.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 3.0 23 12.0 24 33.0 25 62.0 26 129.0 27 236.0 28 436.0 29 808.0 30 1247.0 31 1995.0 32 3163.0 33 5201.0 34 9083.0 35 19705.0 36 27621.0 37 87023.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.536171299103295 15.107381051153586 11.332929125315122 39.02351852442799 2 17.126398652700342 16.25818140063027 43.85358323020197 22.76183671646742 3 16.01513160412866 18.08775309713061 41.53280853289784 24.36430676584289 4 11.465443549930466 29.391801375368402 33.34758034677656 25.795174727924568 5 11.545184296814199 29.92255578662652 45.552380101812986 12.979879814746297 6 23.949016956072416 46.50161395271692 16.915245154952217 12.634123936258437 7 23.222419270467856 26.00887992957297 19.202209775577643 31.56649102438153 8 20.927799538141596 45.04522895163245 15.631738093111675 18.39523341711428 9 19.791653376542186 16.665178172724836 16.449559193151227 47.09360925758175 10-11 20.89143775756261 29.681419768050116 29.16501869123107 20.262123783156202 12-13 20.275201265645133 19.20284770155271 31.078477653453096 29.44347337934906 14-15 18.461577718521543 19.289605634162214 20.81743834445451 41.43137830286174 16-17 28.007502009466823 29.60263591012899 20.14410747776828 22.24575460263591 18-19 28.801719848428785 23.128325189145052 20.863050051672005 27.206904910754155 20-21 19.013064723969432 21.19413363273326 21.023488434402072 38.76931320889524 22-23 19.055486801311574 30.276923665777822 20.952040725194248 29.715548807716353 24-25 27.88743086433142 30.795434972600905 20.482019941693196 20.835114221374486 26-27 28.366973296418685 32.00857372510494 20.885058497811915 18.739394480664465 28-29 19.318312303040354 31.488026129447938 21.66619885428495 27.527462713226758 30-31 27.754883323339158 23.525434108626033 29.337577667487462 19.38210490054734 32-33 27.278352619961982 30.505939090827898 23.952844511922837 18.262863777287283 34-35 20.4346827594126 31.280062261575164 30.02940838745072 18.255846591561514 36-37 18.585335357685096 29.900866303474142 32.63342221768586 18.880376121154903 38-39 17.9853659781319 23.417305655851695 31.650697253090755 26.946631112925658 40-41 18.343242450146086 19.85257530716136 32.506474948646954 29.2977072940456 42-43 27.24422358029574 20.015565393791704 31.38436315849909 21.355847867413466 44-45 18.341328672220875 29.29324181222011 32.81842075045612 19.5470087651029 46-47 26.990966968193007 20.517932099159214 24.868906212123147 27.62219472052463 48-49 25.880018882608862 19.72467114915985 23.54393396190306 30.851376006328223 50-51 18.969339870928227 19.861613110068298 32.51134880961116 28.65769820939232 52-53 16.564252761346886 19.886483278776392 41.766368677297294 21.782895282579425 54-55 15.88475764064629 20.210494739227144 34.396550898815086 29.508196721311474 56-57 25.292242295430395 20.27234460815757 25.235756479114606 29.199656617297425 58-59 16.706604595361245 20.536497736141644 40.162346882448475 22.594550786048632 60-61 25.252699287847463 28.74677744595043 25.128902161982797 20.87162110421931 62-63 16.828372613893418 40.47200482405904 21.49513925003749 21.204483312010055 64-65 15.902841137475834 41.53050091556979 20.777053970765568 21.789603976188804 66-67 16.012661055130472 41.69564967677296 20.118250681233686 22.17343858686288 68-69 16.1439526367499 41.81446416495477 20.251553468669055 21.790029729626276 70-71 16.63226798434355 40.5019761963245 20.240780142975172 22.624975676356783 72-73 17.434567334073478 36.49075456529229 20.518293071985504 25.556385028648727 74-75 18.02997339526219 35.18811527443712 20.616757794805377 26.16515353549531 76 18.1774681315316 35.7067207696921 20.764588038637726 25.35122306013858 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.5 12 3.0 13 4.0 14 3.5 15 5.5 16 15.5 17 22.0 18 36.5 19 44.0 20 51.5 21 66.0 22 96.0 23 165.5 24 248.0 25 291.0 26 405.0 27 523.0 28 700.0 29 873.0 30 962.0 31 1218.5 32 1709.0 33 2032.0 34 2194.0 35 2686.0 36 3395.0 37 3774.0 38 8052.5 39 14256.5 40 15232.5 41 12860.5 42 11438.0 43 10352.5 44 8793.0 45 8228.0 46 8137.0 47 8032.0 48 7643.5 49 6966.0 50 6572.0 51 6339.5 52 5438.0 53 4557.5 54 4346.0 55 3973.0 56 3347.0 57 2707.5 58 2321.0 59 2109.5 60 1789.0 61 1588.5 62 1497.0 63 1355.0 64 1079.5 65 921.5 66 864.0 67 831.0 68 810.0 69 755.5 70 692.0 71 662.0 72 646.0 73 559.0 74 459.5 75 431.0 76 409.0 77 338.5 78 271.5 79 253.0 80 247.0 81 201.5 82 143.5 83 125.0 84 97.5 85 59.5 86 40.0 87 31.0 88 27.0 89 18.0 90 12.0 91 8.0 92 5.0 93 6.5 94 5.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04656859618009926 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.379259750698529E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.014991260414141543 52-53 0.026154964977863966 54-55 0.0507151150180533 56-57 0.051990966968193005 58-59 0.03604281759144669 60-61 0.03189629875349265 62-63 0.0277497799155386 64-65 0.015948149376746323 66-67 0.036361780578981616 68-69 0.007655111700838235 70-71 0.011163704563722425 72-73 0.020413631202235293 74-75 0.012120593526327205 76 0.012758519501397057 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 156758.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.571364778831065 #Duplication Level Percentage of deduplicated Percentage of total 1 38.15155615696887 8.992842470559715 2 14.760487144790257 6.958496536061956 3 12.72259810554804 8.996670026410134 4 10.108254397834912 9.530614067543603 5 7.631935047361299 8.994756248484926 6 5.177266576454668 7.322114341851771 7 3.3098782138024356 5.461284272573011 8 2.213802435723951 4.174587580857117 9 1.3504736129905277 2.8649255540387095 >10 4.495263870094723 16.30793962668572 >50 0.046008119079837616 0.7138391661031653 >100 0.021650879566982407 1.053853710815397 >500 0.002706359945872801 0.3891348447926103 >1k 0.005412719891745602 3.2706464741831356 >5k 0.0 0.0 >10k+ 0.002706359945872801 14.968295079039029 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT 23464 14.968295079039029 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 3156 2.0132943773204555 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 1971 1.25735209686268 No Hit ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT 610 0.3891348447926103 Illumina PCR Primer Index 10 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 491 0.3132216537592978 No Hit CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT 258 0.16458490156802202 No Hit CTTATACACATCTCCGAGCCCACGAGACAGTAGATTAACTCGTATGCCGT 237 0.15118845609155515 No Hit CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 209 0.13332652878959925 Illumina PCR Primer Index 10 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00446548182548897 0.0 2 0.0 0.0 0.0 0.007017185725768382 0.0 3 0.0 0.0 0.0 0.007017185725768382 0.0 4 0.0 0.0 0.0 0.00893096365097794 0.0 5 0.0 0.0 0.0 0.010844741576187499 0.0 6 0.0 0.0 0.0 0.011482667551257352 0.0 7 0.0 0.0 0.0 0.013396445476466911 0.0 8 0.0 0.0 0.0 0.013396445476466911 0.0 9 0.0 0.0 0.0 0.013396445476466911 0.0 10 0.0 0.0 0.0 0.014034371451536763 0.0 11 0.0 0.0 0.0 0.017224001326886028 0.0 12 0.0 0.0 0.0 0.018499853277025732 0.0 13 0.0 0.0 0.0 0.01977570522716544 0.0 14 0.0 0.0 0.0 0.022327409127444853 0.0 15 0.0 0.0 0.0 0.022327409127444853 0.0 16 0.0 0.0 0.0 0.02424118705265441 0.0 17 0.0 0.0 0.0 0.02424118705265441 0.0 18 0.0 0.0 0.0 0.029344594853213234 0.0 19 0.0 0.0 0.0 0.029344594853213234 0.0 20 0.0 0.0 0.0 0.029344594853213234 0.0 21 0.0 0.0 0.0 0.029344594853213234 0.0 22 0.0 0.0 0.0 0.0338100766787022 0.0 23 0.0 0.0 0.0 0.03572385460391176 0.0 24 0.0 0.0 0.0 0.03572385460391176 0.0 25 0.0 0.0 0.0 0.038275558504191176 0.0 26 0.0 0.0 0.0 0.038913484479261025 0.0 27 0.0 0.0 0.0 0.0663443014072647 0.0 28 0.0 0.0 0.0 0.08930963650977941 0.0 29 0.0 0.0 0.0 0.13396445476466912 0.0 30 0.0 0.0 0.0 0.18627438472039703 0.0 31 0.0 0.0 0.0 0.23092920297528674 0.0 32 0.0 0.0 0.0 0.2685668355044081 0.0 33 0.0 0.0 0.0 0.32980772911111395 0.0 34 0.0 0.0 0.0 0.39997958636879777 0.0 35 0.0 0.0 0.0 0.5039615203051838 0.0 36 0.0 0.0 0.0 0.7151150180533051 0.0 37 0.0 0.0 0.0 1.0959568251700074 0.0 38 0.0 0.0 0.0 1.5342119700429961 0.0 39 0.0 0.0 0.0 2.0713456410518125 0.0 40 0.0 0.0 0.0 2.7111853940468746 0.0 41 0.0 0.0 0.0 3.483075823881397 0.0 42 0.0 0.0 0.0 4.2511386978655 0.0 43 0.0 0.0 0.0 5.062580538154353 0.0 44 0.0 0.0 0.0 5.849781191390551 0.0 45 0.0 0.0 0.0 6.622947473175213 0.0 46 0.0 0.0 0.0 7.4216307939626684 0.0 47 0.0 0.0 0.0 8.256037969354036 0.0 48 0.0 0.0 0.0 9.06110054989219 0.0 49 0.0 0.0 0.0 9.845111573253039 0.0 50 0.0 0.0 0.0 10.53534747827862 0.0 51 0.0 0.0 0.0 11.253652126207275 0.0 52 0.0 0.0 0.0 12.045956187244032 0.0 53 0.0 0.0 0.0 12.807001875502367 0.0 54 0.0 0.0 0.0 13.532961635131858 0.0 55 0.0 0.0 0.0 14.328455326043965 0.0 56 0.0 0.0 0.0 14.896209443856135 0.0 57 0.0 0.0 0.0 15.552635272203014 0.0 58 0.0 0.0 0.0 16.146544354993047 0.0 59 0.0 0.0 0.0 16.78574618201304 0.0 60 0.0 0.0 0.0 17.364982967376466 0.0 61 0.0 0.0 0.0 18.020770869748276 0.0 62 0.0 0.0 0.0 18.60383521096212 0.0 63 0.0 0.0 0.0 19.244312889932253 0.0 64 0.0 0.0 0.0 19.802498118118372 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGTAA 15 0.002221673 69.99713 50 GCTGATA 15 0.002221673 69.99713 17 CGCAAGC 15 0.002221673 69.99713 70 TCGCGGA 15 0.002221673 69.99713 18 AACTCGT 55 3.45608E-11 57.27038 37 AATCCAT 25 2.3851328E-4 55.997707 68 ACGCCAA 25 2.3851328E-4 55.997707 61 CAACCGA 25 2.3851328E-4 55.997707 39 CCGTATG 25 2.3851328E-4 55.997707 2 TACGCCA 25 2.3851328E-4 55.997707 60 TACCTCG 25 2.3851328E-4 55.997707 36 GGAATTC 20 0.0069332677 52.5146 56 TAACGAC 20 0.0069332677 52.5146 54 TATGATC 20 0.0069332677 52.5146 52 AACGTTA 20 0.006942024 52.49785 70 GCAACCC 20 0.006942024 52.49785 27 GACAACG 20 0.006942024 52.49785 13 ACATTCG 20 0.006942024 52.49785 10 CCGTCAC 20 0.006942024 52.49785 13 GCAATCT 20 0.006942024 52.49785 40 >>END_MODULE