SRR1779805_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779805_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	189987
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	17538	9.231157921331459	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	2252	1.185344260396764	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1285	0.6763620668782601	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	464	0.24422723660039897	RNA PCR Primer, Index 24 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	436	0.22948938611589212	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	272	0.14316769042092353	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT	255	0.1342197097696158	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGC	15	0.0022243597	69.981575	40
TCCGGTC	20	7.921939E-5	69.981575	8
CAACTCG	80	0.0	56.860027	36
CTCGTAT	2730	0.0	53.447464	39
CCGTCTT	2750	0.0	53.32727	47
CGTCTTC	2745	0.0	53.324986	48
TATGCCG	2745	0.0	53.282875	43
TCTCGTA	2595	0.0	53.261505	38
GCCGTCT	2755	0.0	53.23049	46
CTGCTTG	2705	0.0	53.221336	54
CATCTCG	2580	0.0	53.1643	36
CGTATGC	2765	0.0	53.150562	41
TCGTATG	2765	0.0	53.150562	40
ATGCCGT	2755	0.0	53.08947	44
ATCTCGT	2605	0.0	53.05705	37
TGCCGTC	2770	0.0	52.942238	45
CTTGAAA	2700	0.0	52.9307	57
GTCTTCT	2765	0.0	52.826538	49
GTATGCC	2780	0.0	52.73791	42
TCTTCTG	2765	0.0	52.699856	50