##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779804_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 248796 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.068385343815816 34.0 24.0 34.0 12.0 34.0 2 29.81728002057911 34.0 31.0 34.0 12.0 34.0 3 29.409729256097364 34.0 27.0 34.0 11.0 34.0 4 29.611022685252173 34.0 27.0 34.0 12.0 34.0 5 30.10883213556488 34.0 32.0 34.0 11.0 34.0 6 32.68832698274892 37.0 32.0 38.0 12.0 38.0 7 32.94159472017235 38.0 34.0 38.0 12.0 38.0 8 32.272725445746715 37.0 31.0 38.0 11.0 38.0 9 33.086858309619124 38.0 34.0 38.0 12.0 38.0 10-11 31.73604680139552 37.0 28.5 38.0 11.5 38.0 12-13 32.568887763468865 37.0 31.5 38.0 11.0 38.0 14-15 31.374310680236015 37.0 27.0 38.0 11.0 38.0 16-17 31.99177237576167 37.0 30.0 38.0 11.0 38.0 18-19 32.80861629608194 37.5 33.5 38.0 11.0 38.0 20-21 31.603621038923457 37.0 27.5 38.0 11.0 38.0 22-23 32.469955304747664 37.5 32.5 38.0 11.0 38.0 24-25 32.74549831990868 37.5 32.5 38.0 11.0 38.0 26-27 31.66715702824804 37.0 29.0 38.0 11.0 38.0 28-29 32.83102622228653 37.5 32.5 38.0 11.0 38.0 30-31 33.188087830994064 38.0 34.0 38.0 11.0 38.0 32-33 33.307115066158616 38.0 34.0 38.0 11.0 38.0 34-35 33.24771499541793 38.0 34.0 38.0 11.0 38.0 36-37 32.778879081657266 38.0 32.5 38.0 11.0 38.0 38-39 32.69919331500506 38.0 32.5 38.0 11.0 38.0 40-41 32.72347827135485 38.0 33.0 38.0 11.0 38.0 42-43 33.06778244023216 38.0 34.0 38.0 11.0 38.0 44-45 33.15578224730301 38.0 34.0 38.0 11.0 38.0 46-47 33.065312545217765 38.0 34.0 38.0 11.0 38.0 48-49 32.791433543947655 38.0 33.0 38.0 11.0 38.0 50-51 32.19669930384733 37.5 30.5 38.0 11.0 38.0 52-53 32.73679842119648 37.5 33.0 38.0 11.0 38.0 54-55 32.86113723693307 38.0 33.0 38.0 11.0 38.0 56-57 32.90698001575588 38.0 34.0 38.0 11.0 38.0 58-59 33.11242946028071 38.0 34.0 38.0 11.0 38.0 60-61 33.03590290840688 38.0 34.0 38.0 11.0 38.0 62-63 33.01295639801283 38.0 34.0 38.0 11.0 38.0 64-65 33.021308622325115 38.0 34.0 38.0 11.0 38.0 66-67 32.91544076271323 38.0 33.5 38.0 11.0 38.0 68-69 32.335190276371 37.0 31.0 38.0 11.0 38.0 70-71 32.36429645171144 37.0 31.0 38.0 11.0 38.0 72-73 32.57981438608338 37.0 32.0 38.0 11.0 38.0 74-75 32.60982290712069 37.5 32.0 38.0 11.0 38.0 76 31.66199617357192 37.0 28.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 50.0 13 734.0 14 2363.0 15 4108.0 16 5094.0 17 6053.0 18 6342.0 19 5730.0 20 4374.0 21 3505.0 22 2598.0 23 2232.0 24 2185.0 25 2241.0 26 2395.0 27 2797.0 28 3234.0 29 3948.0 30 4801.0 31 6056.0 32 7617.0 33 10269.0 34 14268.0 35 21395.0 36 38869.0 37 85537.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.67668290486985 18.27802697792569 11.890464476920851 30.154825640283605 2 20.04011318509944 22.392241032814034 32.2111287962829 25.35651698580363 3 19.065017122461775 20.393816620845996 30.776218267174716 29.764947989517516 4 13.869194038489367 23.448930047106867 29.398382610652906 33.283493303750866 5 13.84990112381228 35.335375166803324 32.3401501631859 18.474573546198492 6 29.81325766101804 36.40912891089746 16.652062767291554 17.12555066079295 7 26.827425144405275 28.72187765044477 20.312405789877765 24.13829141527219 8 23.201868272330437 38.45393229522562 17.635236709461143 20.708962722982804 9 24.665265155017106 18.870161870575895 18.684454877622308 37.7801180967847 10-11 23.468977603421386 26.50951814396193 23.97925141083975 26.042252841776936 12-13 23.559663338638885 23.053023360504188 25.34526278557533 28.0420505152816 14-15 24.579222694944242 24.996633781559556 22.067119381178518 28.357024142317687 16-17 25.44454090901783 25.95017604784643 22.301202591681538 26.304080451454205 18-19 22.172425851417454 25.86890201012094 25.076670779891558 26.882001358570047 20-21 24.73311468030033 25.0317529220727 24.40855158443062 25.826580813196355 22-23 25.5679443068909 25.080790379111868 22.937232708447215 26.41403260555002 24-25 22.798544957594757 27.6556533622734 22.878130149925642 26.6676715302062 26-27 23.76268863383783 27.602589275127563 23.79946582635136 24.835256264683245 28-29 22.75544657930702 27.175817991799985 24.633813007476483 25.434922421416513 30-31 23.252584446695284 26.659793565812954 24.577766523577548 25.50985546391421 32-33 22.015313812576622 27.41152354347957 24.761550674249886 25.811611969693928 34-35 21.922725217303924 27.976084007436064 24.972717680751646 25.128473094508365 36-37 23.796965579346 25.801218914072987 24.89266159053814 25.50915391604287 38-39 23.809763078135173 25.082605095387784 25.852782043139555 25.254849783337484 40-41 21.986595255082047 26.439502798516834 25.688274365183837 25.88562758121728 42-43 20.906452727959675 25.70379510759906 26.414021238454303 26.975730925986962 44-45 20.444003183510063 24.18945100529781 28.001020974186236 27.365524837005893 46-47 20.958649449831686 25.36843691905743 27.319298598201275 26.353615032909612 48-49 21.097733269827106 25.631997491905974 26.902523970586167 26.36774526768076 50-51 22.680281842992713 25.680591339718877 25.879151577026498 25.759975240261905 52-53 18.748140823102837 27.107000152753997 26.825611216966948 27.31924780717622 54-55 19.618365410898335 25.997298731368485 26.67020404225556 27.71413181547763 56-57 19.996221325792067 26.496947916603858 26.010745102295544 27.496085655308534 58-59 19.686009514984995 26.392526294843936 26.070536308290336 27.85092788188073 60-61 19.328641583696673 25.294239440045512 26.503762043464015 28.873356932793804 62-63 20.212126632806264 25.963905911768663 25.694979026516833 28.128988428908237 64-65 20.675722940729514 25.187845992417817 25.218801886299403 28.917629180553266 66-67 20.206350929242493 27.587627788431 23.698598196590165 28.507423085736338 68-69 20.814207738128733 28.234603728385732 23.03150397517625 27.91968455830928 70-71 21.10709397878981 28.86225836078225 22.731721433868376 27.298926226559566 72-73 21.958586981206775 29.02649460481176 22.35390585903978 26.66101255494169 74-75 22.793689076474728 28.95347201286303 22.14872877097779 26.104110139684455 76 21.768559829575143 29.674022267776035 22.23642429358093 26.320993609067887 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 2.0 14 13.5 15 25.5 16 36.0 17 44.0 18 80.0 19 129.0 20 188.0 21 234.0 22 305.5 23 431.0 24 666.5 25 848.0 26 948.5 27 1188.0 28 1592.5 29 1858.0 30 2187.5 31 2854.0 32 3610.5 33 4030.0 34 4406.5 35 5334.0 36 6361.5 37 6838.0 38 7390.5 39 8512.5 40 9678.0 41 10700.0 42 11126.0 43 11505.5 44 12318.5 45 12820.5 46 12889.0 47 13052.5 48 12971.0 49 12653.0 50 12580.0 51 12252.5 52 11392.0 53 10443.5 54 10028.0 55 9667.0 56 8895.0 57 7955.5 58 7427.0 59 6902.0 60 5887.0 61 5091.5 62 4786.0 63 4330.0 64 3605.5 65 3202.0 66 2719.5 67 2372.0 68 2233.0 69 1957.5 70 1663.5 71 1506.0 72 1433.5 73 1227.0 74 1051.5 75 1010.0 76 941.0 77 842.5 78 717.0 79 621.0 80 576.5 81 467.0 82 364.0 83 326.0 84 287.5 85 218.0 86 155.0 87 123.0 88 98.5 89 62.5 90 43.5 91 38.5 92 41.0 93 34.5 94 23.5 95 16.5 96 14.0 97 13.0 98 9.0 99 10.0 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.00160774288975707 7 0.006832907281467547 8 0.004019357224392675 9 0.006832907281467547 10-11 0.00321548577951414 12-13 0.0 14-15 2.0096786121963375E-4 16-17 0.0 18-19 0.0020096786121963374 20-21 0.0 22-23 0.00160774288975707 24-25 0.002411614334635605 26-27 2.0096786121963375E-4 28-29 0.00643097155902828 30-31 0.0 32-33 4.019357224392675E-4 34-35 0.0034164536407337736 36-37 0.020096786121963375 38-39 0.008842585893663884 40-41 0.0014067750285374362 42-43 8.03871444878535E-4 44-45 0.005627100114149745 46-47 0.0034164536407337736 48-49 6.029035836589013E-4 50-51 0.0020096786121963374 52-53 0.012058071673178026 54-55 0.00964645733854242 56-57 0.012660975256836926 58-59 0.012259039534397657 60-61 0.024719046930014952 62-63 0.011857103811958392 64-65 0.022106464734159715 66-67 0.01808710750976704 68-69 8.03871444878535E-4 70-71 2.0096786121963375E-4 72-73 0.0038183893631730413 74-75 0.008440650171224617 76 0.002411614334635605 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 248796.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.47611211566311 #Duplication Level Percentage of deduplicated Percentage of total 1 76.41050374041197 49.266522059810974 2 9.273179656663642 11.957971424234625 3 6.088058797018528 11.776030846899472 4 3.830878802472376 9.880006846789046 5 2.1592922455970673 6.961138445879925 6 1.1572930743134429 4.477065480606838 7 0.5471028690139458 2.4692546144940883 8 0.26441407000262634 1.3638712977958505 9 0.11992238621360926 0.6958916296817872 >10 0.14871343936318787 1.1270397377438652 >50 6.409189295682145E-4 0.0252076160635335 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00160774288975707 0.0 2 0.0 0.0 0.0 0.004421292946831943 0.0 3 0.0 0.0 0.0 0.0056271001141497455 0.0 4 0.0 0.0 0.0 0.00964645733854242 0.0 5 0.0 0.0 0.0 0.010450328783420955 0.0 6 0.0 0.0 0.0 0.010450328783420955 0.0 7 0.0 0.0 0.0 0.010450328783420955 0.0 8 0.0 0.0 0.0 0.010852264505860222 0.0 9 0.0 0.0 0.0 0.01446968600781363 0.0 10 0.0 0.0 0.0 0.02090065756684191 0.0 11 0.0 0.0 0.0 0.021704529011720444 0.0 12 0.0 0.0 0.0 0.022508400456598982 0.0 13 0.0 0.0 0.0 0.027331629125870192 4.019357224392675E-4 14 0.0 0.0 0.0 0.027331629125870192 4.019357224392675E-4 15 0.0 0.0 0.0 0.028135500570748727 4.019357224392675E-4 16 0.0 0.0 0.0 0.029743243460505796 4.019357224392675E-4 17 0.0 0.0 0.0 0.030145179182945063 4.019357224392675E-4 18 0.0 0.0 0.0 0.034164536407337735 4.019357224392675E-4 19 0.0 0.0 0.0 0.03898776507660895 4.019357224392675E-4 20 0.0 0.0 0.0 0.042605186578562354 4.019357224392675E-4 21 0.0 0.0 0.0 0.0458206723580765 4.019357224392675E-4 22 0.0 0.0 0.0 0.049438093860029904 4.019357224392675E-4 23 0.0 0.0 0.0 0.050643901027347706 4.019357224392675E-4 24 0.0 0.0 0.0 0.06109422981076866 4.019357224392675E-4 25 0.0 0.0 0.0 0.07033875142687182 4.019357224392675E-4 26 0.0 0.0 0.0 0.08320069454492837 4.019357224392675E-4 27 0.0 0.0 0.0 0.12942330262544413 4.019357224392675E-4 28 0.0 0.0 0.0 0.160774288975707 4.019357224392675E-4 29 0.0 0.0 0.0 0.19574269682792328 4.019357224392675E-4 30 0.0 0.0 0.0 0.2339265904596537 4.019357224392675E-4 31 0.0 0.0 0.0 0.28497242720944066 4.019357224392675E-4 32 0.0 0.0 0.0 0.34204729979581666 4.019357224392675E-4 33 0.0 0.0 0.0 0.40072991527194973 4.019357224392675E-4 34 0.0 0.0 0.0 0.4730783453110179 4.019357224392675E-4 35 0.0 0.0 0.0 0.6105403623852473 4.019357224392675E-4 36 0.0 0.0 0.0 0.838437917008312 4.019357224392675E-4 37 0.0 0.0 0.0 1.2644897827939356 4.019357224392675E-4 38 0.0 0.0 0.0 1.825592051319153 4.019357224392675E-4 39 0.0 0.0 0.0 2.438544028039036 4.019357224392675E-4 40 0.0 0.0 0.0 3.039035997363302 4.019357224392675E-4 41 0.0 0.0 0.0 3.893953278991624 4.019357224392675E-4 42 0.0 0.0 0.0 4.800720268814612 4.019357224392675E-4 43 0.0 0.0 0.0 5.76737568128105 4.019357224392675E-4 44 0.0 0.0 0.0 6.696651071560636 4.019357224392675E-4 45 0.0 0.0 0.0 7.579703853759707 4.019357224392675E-4 46 0.0 0.0 0.0 8.508577308316854 4.019357224392675E-4 47 0.0 0.0 0.0 9.324908760591006 4.019357224392675E-4 48 0.0 0.0 0.0 10.081753725944147 4.019357224392675E-4 49 0.0 0.0 0.0 10.761427032588948 4.019357224392675E-4 50 0.0 0.0 0.0 11.490940368816219 4.019357224392675E-4 51 0.0 0.0 0.0 12.244569848389846 4.019357224392675E-4 52 0.0 0.0 0.0 13.11998585186257 4.019357224392675E-4 53 0.0 0.0 0.0 13.96525667615235 4.019357224392675E-4 54 0.0 0.0 0.0 14.751442949243557 4.019357224392675E-4 55 0.0 0.0 0.0 15.510297593208895 4.019357224392675E-4 56 0.0 0.0 0.0 16.226948986318106 4.019357224392675E-4 57 0.0 0.0 0.0 16.956462322545377 4.019357224392675E-4 58 0.0 0.0 0.0 17.562179456261354 4.019357224392675E-4 59 0.0 0.0 0.0 18.196835961992956 4.019357224392675E-4 60 0.0 0.0 0.0 18.77843695236258 4.019357224392675E-4 61 0.0 0.0 0.0 19.29813984147655 4.019357224392675E-4 62 0.0 0.0 0.0 19.90265116802521 4.019357224392675E-4 63 0.0 0.0 0.0 20.597598032122704 4.019357224392675E-4 64 0.0 0.0 0.0 21.203717101561118 4.019357224392675E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCTT 15 0.0022242675 69.98875 14 CGACGAT 130 0.0 56.52937 22 GACGAAT 70 0.0 55.002213 23 GGACGGT 20 0.0069390396 52.51267 58 CGTAACC 20 0.0069390396 52.51267 56 TGTGCGA 20 0.0069445604 52.502113 10 CCGTCAT 20 0.0069445604 52.502113 70 GTGTCGA 20 0.0069445604 52.502113 36 TCGACGT 20 0.0069445604 52.502113 52 GCCGTAT 60 8.367351E-11 52.502113 54 GTGCGAA 20 0.0069500846 52.491558 11 CGCCGTA 80 0.0 48.126934 53 ACGAACG 45 1.679964E-6 46.668545 24 TTACGCT 45 1.6822923E-6 46.659164 13 TCGCCGT 100 0.0 45.50183 52 GACGATC 70 3.8198777E-10 45.00181 23 CGGCGGT 55 1.3087265E-7 44.538296 46 TGGTCGC 55 1.3087265E-7 44.538296 49 TCTCGGT 130 0.0 43.069996 43 GTAGATC 230 0.0 42.601845 38 >>END_MODULE