SRR1779804_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779804_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	248796
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	28810	11.579768163475297	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG	3858	1.5506680171706941	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	1926	0.7741282014180292	No Hit
ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT	782	0.3143137349475072	TruSeq Adapter, Index 12 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	581	0.23352465473721443	No Hit
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGT	329	0.132236852682519	No Hit
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAACTCGTATGCCGT	297	0.11937490956446244	No Hit
CTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC	269	0.10812070933616297	TruSeq Adapter, Index 12 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGTG	15	0.0022245469	69.98653	9
ATCGTAT	75	0.0	55.989227	39
ATATCGT	70	0.0	54.989418	37
TCTCGTA	3920	0.0	52.668438	38
CGTCTTC	4005	0.0	52.62027	48
CCGTCTT	4005	0.0	52.62027	47
ATCTCGT	3935	0.0	52.556595	37
CTGCTTG	4020	0.0	52.53214	54
CGTATGC	4065	0.0	52.51142	41
TCCTCGT	20	0.006950953	52.489902	31
TAGGGCG	20	0.006950953	52.489902	25
ATCGGTA	20	0.006950953	52.489902	22
CGGAGTT	20	0.006950953	52.489902	29
AGCACGT	20	0.006950953	52.489902	30
TCGTATG	4085	0.0	52.42565	40
GCCGTCT	4040	0.0	52.424355	46
TGCCGTC	4060	0.0	52.328037	45
TATGCCG	4055	0.0	52.29573	43
AATCTCG	3905	0.0	52.243465	36
CTCGTAT	4035	0.0	52.121323	39