FastQCFastQC Report
Wed 25 May 2016
SRR1779803_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779803_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66651
Sequences flagged as poor quality0
Sequence length76
%GC49

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGTACA150.00221512270.0045129
AGGACGT150.00221512270.0045121
GCTGCGG150.00221512270.0045117
GGAAGCC150.00221512270.004517
AGATTTC150.00221512270.0045140
GGCGGTC150.00221512270.0045147
CGTGTAA150.00221512270.0045135
CCGTTTG150.00221512270.0045119
ACGACGT150.00221512270.0045112
TACGTTT150.00221512270.0045133
AGTGTCG150.00221512270.0045135
ACGTCGA207.87148E-570.004515
TCGGCGG252.8232007E-669.9519945
GTCCATA401.0462827E-861.2539422
GTTTAGA308.29093E-658.3370936
GACGTCG308.29093E-658.3370914
GTGGTCC308.29093E-658.3370948
GCCGTAC308.29093E-658.3370954
CTCGGCG252.3739075E-456.003644
TCTCGGC252.3739075E-456.003643
Produced by FastQC (version 0.11.5)