##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779803_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 66651 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.10446955034433 23.0 12.0 34.0 12.0 34.0 2 23.3987487059459 23.0 12.0 34.0 12.0 34.0 3 23.358464239096186 23.0 11.0 34.0 11.0 34.0 4 24.02065985506594 23.0 12.0 34.0 12.0 34.0 5 23.57477007096668 23.0 11.0 34.0 11.0 34.0 6 25.143343685766155 26.0 12.0 37.0 11.0 38.0 7 25.21671092706786 26.0 12.0 37.0 11.0 38.0 8 24.765269838412028 26.0 11.0 37.0 11.0 38.0 9 25.8650882957495 27.0 12.0 37.0 11.0 38.0 10-11 25.03542332448125 26.0 11.5 37.0 11.0 38.0 12-13 25.33710672007922 27.0 11.0 37.0 11.0 38.0 14-15 24.536901171775366 26.0 11.0 36.5 11.0 38.0 16-17 24.675413722224725 26.0 11.0 36.5 11.0 38.0 18-19 24.669494831285352 26.0 11.0 37.0 11.0 38.0 20-21 24.670275014628437 25.0 11.0 36.5 11.0 38.0 22-23 24.84018994463699 26.0 11.0 37.0 11.0 38.0 24-25 25.031507404239996 26.0 11.0 37.0 11.0 38.0 26-27 24.279620710867054 24.5 11.0 37.0 10.5 38.0 28-29 24.45006826604252 26.0 11.0 37.0 11.0 38.0 30-31 24.57071161723005 26.0 11.0 37.5 11.0 38.0 32-33 24.823948627927564 26.0 11.0 38.0 11.0 38.0 34-35 24.938087950668407 26.0 11.0 37.0 11.0 38.0 36-37 24.712059834061005 26.0 11.0 37.0 11.0 38.0 38-39 24.518536856161198 26.0 11.0 37.0 11.0 38.0 40-41 24.447000045010576 26.0 11.0 37.0 11.0 38.0 42-43 24.66746185353558 26.0 11.0 37.0 11.0 38.0 44-45 24.867488859882073 26.0 11.0 37.0 11.0 38.0 46-47 24.705143208654036 26.0 11.0 37.0 11.0 38.0 48-49 24.43006106435012 25.5 11.0 37.0 11.0 38.0 50-51 24.121708601521355 24.5 11.0 37.0 11.0 38.0 52-53 24.500622646321887 25.5 11.0 37.0 11.0 38.0 54-55 24.514065805464284 25.0 11.0 37.0 11.0 38.0 56-57 24.453946677469204 25.0 11.0 37.0 11.0 38.0 58-59 24.42414217341075 24.5 11.0 37.0 11.0 38.0 60-61 24.607957870099472 25.0 11.0 37.0 11.0 38.0 62-63 24.376565993008356 25.0 11.0 37.0 11.0 38.0 64-65 24.367248803468815 24.5 11.0 37.0 11.0 38.0 66-67 24.741249193560485 25.0 11.0 37.0 11.0 38.0 68-69 24.38396273124184 24.5 11.0 37.0 11.0 38.0 70-71 24.55677334173531 24.5 11.0 37.0 11.0 38.0 72-73 24.23524778322906 24.5 11.0 37.0 11.0 38.0 74-75 23.88665586412807 24.0 11.0 37.0 11.0 38.0 76 23.498117057508516 23.0 11.0 36.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 39.0 13 543.0 14 2247.0 15 4351.0 16 5769.0 17 6466.0 18 6292.0 19 5404.0 20 4041.0 21 2727.0 22 1878.0 23 1343.0 24 1007.0 25 762.0 26 637.0 27 555.0 28 502.0 29 513.0 30 632.0 31 725.0 32 870.0 33 1086.0 34 1589.0 35 2422.0 36 4536.0 37 9712.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.42050381839732 20.37478807519767 9.462723740078918 46.741984366326086 2 11.59772546548439 35.00022505288743 28.124109165653927 25.277940315974256 3 10.789035423324481 21.951658639780348 31.331862987802133 35.927442949093034 4 10.02235525348457 32.599660920316275 27.205893384945462 30.172090441253697 5 9.963841502753148 31.706951133516377 36.78264392132151 21.546563442408967 6 15.256271756091705 39.908174288800865 23.573100468131077 21.262453486976355 7 26.069081415238728 25.756984665246225 16.844221708729705 31.329712210785342 8 14.589647411852964 40.03450862715679 22.939234808702174 22.436609152288074 9 21.112728254835176 18.787042177442345 16.713430461986288 43.38679910573619 10-11 15.258929174262374 31.993488323243234 23.648339447407707 29.09924305508668 12-13 15.246582946992543 23.155691587523066 26.70477562227123 34.89294984321315 14-15 26.346388999332337 27.369637137005725 19.82430739454318 26.45966646911876 16-17 28.682990502768153 24.054402784654393 18.114506909123644 29.148099803453814 18-19 19.816352710823036 23.720357992182986 22.611572479913576 33.851716817080394 20-21 25.04163478417428 23.344736012963047 20.016953984186284 31.59667521867639 22-23 29.43682998372081 22.273985551279456 17.819338479658512 30.469845985341227 24-25 18.984103645133946 32.25557197620423 17.472487078116444 31.287837300545384 26-27 24.01575393848462 32.058514628657164 19.55888972243061 24.366841710427607 28-29 20.196253479073047 29.56105538759312 23.584176688147522 26.658514445186317 30-31 22.066435612368906 27.04310512970548 24.19993698519152 26.69052227273409 32-33 17.278060344180883 31.430886258270696 23.523277970323026 27.7677754272254 34-35 16.467604957536835 35.52876391681421 21.314857605857814 26.688773519791138 36-37 24.22662234860706 25.404602375468006 22.04698414603951 28.321791129885426 38-39 24.861198643498096 22.451306983583926 26.197443053929952 26.49005131898803 40-41 19.192654218648023 28.572928935266802 24.377911643573565 27.85650520251161 42-43 13.997749437359339 28.006751687921984 26.09227306826707 31.903225806451612 44-45 13.955721605785751 23.840711815324138 31.140419977043056 31.06314660184706 46-47 17.361361181130714 27.843296122914417 26.060046813107668 28.735295882847193 48-49 18.62387661100359 28.930548678939548 23.31322860872305 29.132346101333813 50-51 25.41880790727334 28.1045800667692 18.312014704227465 28.164597321729996 52-53 12.88020888041896 31.825002626011013 23.45928182350205 31.835506670067975 54-55 15.988926068754408 25.948711792686403 23.50809537385772 34.55426676470147 56-57 19.348279536007443 28.962019237983768 20.166869250739055 31.52283197526974 58-59 17.637658215976533 29.05921985549545 20.979419730948436 32.323702197579586 60-61 14.148402151973768 25.97975583951738 23.10145340766697 36.77038860084188 62-63 17.292527929293307 27.298305110179093 21.613409061920873 33.79575789860672 64-65 18.19662044540489 25.995708025691815 20.8258298817456 34.981841647157694 66-67 14.380467894176082 36.08472516094179 16.68617476252645 32.84863218235567 68-69 16.495000037509097 38.41531571406066 15.505510086195903 29.584174162234344 70-71 16.90372237475807 39.56204708106405 15.284091761563968 28.250138782613917 72-73 18.20371051111428 38.71955107766866 15.813559194880606 27.263179216336454 74-75 20.797791331877892 36.35974882401926 15.579962938788983 27.26249690531386 76 16.768695234665707 37.313947905413514 18.119073340535348 27.798283519385432 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 2.0 16 1.5 17 1.0 18 3.0 19 9.5 20 18.0 21 22.0 22 20.0 23 37.0 24 68.5 25 81.0 26 84.0 27 132.0 28 191.5 29 206.0 30 240.0 31 307.0 32 468.5 33 597.0 34 684.5 35 904.5 36 1171.5 37 1306.0 38 1593.0 39 2098.5 40 2517.0 41 2954.5 42 3192.0 43 3471.5 44 3853.0 45 4112.0 46 4269.0 47 4363.0 48 4393.5 49 4282.5 50 4235.0 51 4120.5 52 3840.5 53 3434.5 54 3194.0 55 3021.0 56 2655.0 57 2227.0 58 1992.0 59 1856.5 60 1563.5 61 1243.5 62 1081.0 63 983.0 64 792.0 65 607.0 66 488.5 67 462.0 68 400.0 69 297.5 70 230.0 71 203.0 72 185.5 73 149.0 74 111.5 75 93.0 76 82.0 77 67.5 78 56.5 79 49.0 80 44.5 81 38.5 82 35.0 83 33.0 84 27.5 85 21.0 86 14.5 87 9.0 88 11.0 89 13.5 90 11.5 91 8.0 92 7.0 93 5.5 94 5.0 95 5.5 96 5.0 97 4.5 98 5.0 99 4.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.004501057748570914 7 0.0075017629142848565 8 0.0015003525828569714 9 0.0060014103314278856 10-11 0.002250528874285457 12-13 0.0 14-15 7.501762914284857E-4 16-17 0.0 18-19 0.002250528874285457 20-21 0.0 22-23 0.002250528874285457 24-25 7.501762914284857E-4 26-27 0.0015003525828569714 28-29 0.0037508814571424283 30-31 0.0 32-33 0.0 34-35 0.0075017629142848565 36-37 0.01725405470285517 38-39 0.013503173245712742 40-41 7.501762914284857E-4 42-43 0.0015003525828569714 44-45 0.006751586622856371 46-47 0.004501057748570914 48-49 0.0 50-51 0.0052512340399994 52-53 0.015003525828569713 54-55 0.012002820662855771 56-57 0.018004230994283655 58-59 0.01425334953714123 60-61 0.021755112451426084 62-63 0.01425334953714123 64-65 0.02250528874285457 66-67 0.018004230994283655 68-69 7.501762914284857E-4 70-71 0.0 72-73 0.0037508814571424283 74-75 0.006751586622856371 76 0.004501057748570914 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 66651.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.68587117972723 #Duplication Level Percentage of deduplicated Percentage of total 1 93.78472402513111 81.29810505468785 2 2.597919587379061 4.5040584537366275 3 1.381172438859754 3.5918440833595895 4 0.9363587586755975 3.246762989302486 5 0.5209685514997316 2.258030637199742 6 0.321927410561296 1.6743934824683802 7 0.20942589611783236 1.2707986376798548 8 0.10038596673416758 0.6961635984456347 9 0.057116153486681545 0.4456047171085205 >10 0.08827041902487148 0.9257175436227514 >50 0.001730792529899441 0.08852080238856132 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0030007051657139428 0.0 2 0.0 0.0 0.0 0.0030007051657139428 0.0 3 0.0 0.0 0.0 0.0030007051657139428 0.0 4 0.0 0.0 0.0 0.0075017629142848565 0.0 5 0.0 0.0 0.0 0.028506699074282455 0.0 6 0.0 0.0 0.0 0.028506699074282455 0.0 7 0.0 0.0 0.0 0.028506699074282455 0.0 8 0.0 0.0 0.0 0.028506699074282455 0.0 9 0.0 0.0 0.0 0.0315074042399964 0.0 10 0.0 0.0 0.0 0.03300775682285337 0.0 11 0.0 0.0 0.0 0.03300775682285337 0.0 12 0.0 0.0 0.0 0.03900916715428126 0.0 13 0.0 0.0 0.0 0.048011282651423084 0.0 14 0.0 0.0 0.0 0.048011282651423084 0.0 15 0.0 0.0 0.0 0.048011282651423084 0.0 16 0.0 0.0 0.0 0.048011282651423084 0.0 17 0.0 0.0 0.0 0.048011282651423084 0.0 18 0.0 0.0 0.0 0.05401269298285097 0.0 19 0.0 0.0 0.0 0.06451516106284977 0.0 20 0.0 0.0 0.0 0.06601551364570674 0.0 21 0.0 0.0 0.0 0.06601551364570674 0.0 22 0.0 0.0 0.0 0.09002115497141829 0.0 23 0.0 0.0 0.0 0.0945222127199892 0.0 24 0.0 0.0 0.0 0.0945222127199892 0.0 25 0.0 0.0 0.0 0.09752291788570314 0.0 26 0.0 0.0 0.0 0.09752291788570314 0.0 27 0.0 0.0 0.0 0.11102609113141589 0.0 28 0.0 0.0 0.0 0.12752996954284257 0.0 29 0.0 0.0 0.0 0.14403384795426924 0.0 30 0.0 0.0 0.0 0.1620380789485529 0.0 31 0.0 0.0 0.0 0.18004230994283657 0.0 32 0.0 0.0 0.0 0.23255465034283057 0.0 33 0.0 0.0 0.0 0.2415567658399724 0.0 34 0.0 0.0 0.0 0.2835666381599676 0.0 35 0.0 0.0 0.0 0.315074042399964 0.0 36 0.0 0.0 0.0 0.45310648002280535 0.0 37 0.0 0.0 0.0 0.7051657139427766 0.0 38 0.0 0.0 0.0 0.9557245952798907 0.0 39 0.0 0.0 0.0 1.14927007846844 0.0 40 0.0 0.0 0.0 1.3758233184798427 0.0 41 0.0 0.0 0.0 1.620380789485529 0.0 42 0.0 0.0 0.0 1.9204513060569233 0.0 43 0.0 0.0 0.0 2.148504898651183 0.0 44 0.0 0.0 0.0 2.465079293634004 0.0 45 0.0 0.0 0.0 2.766650162788255 0.0 46 0.0 0.0 0.0 3.0772231474396485 0.0 47 0.0 0.0 0.0 3.414802478582467 0.0 48 0.0 0.0 0.0 3.6503578340910114 0.0 49 0.0 0.0 0.0 3.891914599930984 0.0 50 0.0 0.0 0.0 4.148474891599526 0.0 51 0.0 0.0 0.0 4.4905552804909155 0.0 52 0.0 0.0 0.0 4.736613104079459 0.0 53 0.0 0.0 0.0 5.051687146479423 0.0 54 0.0 0.0 0.0 5.299245322650823 0.0 55 0.0 0.0 0.0 5.630823243462213 0.0 56 0.0 0.0 0.0 5.912889529039324 0.0 57 0.0 0.0 0.0 6.182952993953579 0.0 58 0.0 0.0 0.0 6.436512580456407 0.0 59 0.0 0.0 0.0 6.661565467884953 0.0 60 0.0 0.0 0.0 6.955634574124919 0.0 61 0.0 0.0 0.0 7.18818922446775 0.0 62 0.0 0.0 0.0 7.459753041964862 0.0 63 0.0 0.0 0.0 7.768825674033398 0.0 64 0.0 0.0 0.0 7.984876445964802 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAGTACA 15 0.002215122 70.00451 29 AGGACGT 15 0.002215122 70.00451 21 GCTGCGG 15 0.002215122 70.00451 17 GGAAGCC 15 0.002215122 70.00451 7 AGATTTC 15 0.002215122 70.00451 40 GGCGGTC 15 0.002215122 70.00451 47 CGTGTAA 15 0.002215122 70.00451 35 CCGTTTG 15 0.002215122 70.00451 19 ACGACGT 15 0.002215122 70.00451 12 TACGTTT 15 0.002215122 70.00451 33 AGTGTCG 15 0.002215122 70.00451 35 ACGTCGA 20 7.87148E-5 70.0045 15 TCGGCGG 25 2.8232007E-6 69.95199 45 GTCCATA 40 1.0462827E-8 61.25394 22 GTTTAGA 30 8.29093E-6 58.33709 36 GACGTCG 30 8.29093E-6 58.33709 14 GTGGTCC 30 8.29093E-6 58.33709 48 GCCGTAC 30 8.29093E-6 58.33709 54 CTCGGCG 25 2.3739075E-4 56.0036 44 TCTCGGC 25 2.3739075E-4 56.0036 43 >>END_MODULE