FastQCFastQC Report
Wed 25 May 2016
SRR1779802_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779802_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83413
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCAGT150.002215317570.0185929
CGGTGGA150.002215317570.0185946
CGATACG150.002215317570.0185925
TAGATCG207.8987054E-569.97661639
CGATCTC150.002220597169.97661640
CGTGTAG453.765308E-1062.2387535
ACGTGTA352.9369585E-760.0159434
ATCCTTG308.328905E-658.31384713
ATCTAGG308.328905E-658.31384742
GTCGATC252.382086E-455.98129338
ATCGCGG252.382086E-455.98129342
GTAGTCC252.382086E-455.98129319
GACGATA700.055.0146123
GATACGC200.00692227452.5139526
TTGAGTT200.00692227452.5139532
GTGTACA200.00692227452.5139536
GTGGTCG1200.052.51394348
CTTATGG200.006938724352.4824648
AGAGCTC200.006938724352.48246410
GTTATAC200.006938724352.4824641
Produced by FastQC (version 0.11.5)