SRR1779802_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779802_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	83413
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	26092	31.280495845971252	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	3467	4.15642645630777	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	2270	2.721398343183916	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	605	0.7253066068838191	RNA PCR Primer, Index 48 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	435	0.5215014446189442	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT	315	0.3776389771378562	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT	244	0.29252035054487907	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	230	0.2757363960054188	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT	200	0.2397707791351468	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC	173	0.20740172395190196	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	157	0.18822006162109023	RNA PCR Primer, Index 48 (95% over 21bp)
CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	117	0.14026590579406087	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAGCTCGTATGCCGT	103	0.1234819512546006	No Hit
CCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	100	0.1198853895675734	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCG	92	0.11029455840216754	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	86	0.10310143502811311	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	84	0.10070372723676166	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTGCCG	15	0.0022196916	69.98381	43
CTCGTCT	15	0.0022196916	69.98381	39
GGCCGTG	15	0.0022196916	69.98381	27
CGAGCAC	25	2.8218146E-6	69.98381	15
CGAGACA	15	0.0022196916	69.98381	23
CGAGAAT	20	7.894686E-5	69.98381	23
GCTTGCA	35	2.9348666E-7	60.022114	56
CGTCAAA	55	3.45608E-11	57.259483	32
AAACTCG	50	9.658834E-10	55.98705	36
AATTTCG	25	2.3808758E-4	55.98705	27
ATATCGT	50	9.658834E-10	55.98705	37
CTTGCAA	45	2.6553607E-8	54.464508	57
GTCAATC	3790	0.0	53.8266	33
CGTCAAT	3825	0.0	53.79148	32
TCAATCT	3795	0.0	53.755684	34
CAATCTC	3815	0.0	53.565594	35
ATCTCGT	3855	0.0	53.55441	37
AATCTCG	3830	0.0	53.538532	36
TCGTCAA	3985	0.0	53.3879	31
TCTCGTA	3845	0.0	53.329666	38