SRR1779801_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779801_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	150335
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	19462	12.945754481657632	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	2809	1.8684936974091195	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	1510	1.0044234542854291	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	496	0.3299298233944191	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	413	0.27471979246349815	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT	308	0.20487577743040544	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	308	0.20487577743040544	No Hit
CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	197	0.13104067582399306	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGATC	15	0.0022248628	69.97039	8
GGTCTAA	15	0.0022248628	69.97039	40
ACTCGTA	70	0.0	59.974617	38
AACTCGT	75	0.0	55.976315	37
GTAACTC	75	0.0	55.976315	35
GTTGCAC	25	2.3893217E-4	55.976315	38
CTCGTAT	2695	0.0	54.003124	39
CCGTCTT	2685	0.0	53.997547	47
CGTATGC	2720	0.0	53.89264	41
TCGTATG	2735	0.0	53.852894	40
CGTCTTC	2695	0.0	53.797184	48
GCCGTCT	2705	0.0	53.727768	46
TCTCGTA	2535	0.0	53.685368	38
TATGCCG	2720	0.0	53.635395	43
GTATGCC	2720	0.0	53.635395	42
ATCTCGT	2540	0.0	53.57969	37
TGCCGTC	2720	0.0	53.52458	45
CTGCTTG	2715	0.0	53.41868	54
ACGTATC	2515	0.0	53.41676	33
CGTATCT	2530	0.0	53.37662	34