##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779800_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 618512 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.46702893395763 34.0 31.0 34.0 21.0 34.0 2 31.59437650360866 34.0 33.0 34.0 23.0 34.0 3 31.167178648110305 34.0 33.0 34.0 23.0 34.0 4 31.19860730268774 34.0 33.0 34.0 23.0 34.0 5 31.833277284838452 34.0 34.0 34.0 23.0 34.0 6 34.63483651085185 38.0 36.0 38.0 26.0 38.0 7 34.8250252218227 38.0 36.0 38.0 26.0 38.0 8 34.24805824300903 38.0 35.0 38.0 23.0 38.0 9 35.152079506945704 38.0 36.0 38.0 27.0 38.0 10-11 33.66089340222987 37.5 33.5 38.0 19.0 38.0 12-13 34.66254090462271 38.0 36.0 38.0 25.5 38.0 14-15 33.415644320562905 37.5 33.0 38.0 17.0 38.0 16-17 34.11827579739762 37.5 35.0 38.0 24.0 38.0 18-19 35.145923603745764 38.0 36.5 38.0 27.0 38.0 20-21 33.64731807951988 37.5 33.0 38.0 18.5 38.0 22-23 34.65395497581292 38.0 35.5 38.0 25.0 38.0 24-25 34.989869234550014 38.0 36.5 38.0 26.5 38.0 26-27 33.842957776081946 38.0 34.0 38.0 22.0 38.0 28-29 35.233260631968335 38.0 36.5 38.0 29.0 38.0 30-31 35.65494444731873 38.0 37.0 38.0 31.0 38.0 32-33 35.75345829991981 38.0 37.0 38.0 31.5 38.0 34-35 35.650688264738605 38.0 37.0 38.0 31.0 38.0 36-37 35.120683996430145 38.0 36.5 38.0 28.5 38.0 38-39 35.090481672142175 38.0 36.5 38.0 28.5 38.0 40-41 35.10349273740849 38.0 36.5 38.0 27.0 38.0 42-43 35.49106484595286 38.0 36.5 38.0 29.5 38.0 44-45 35.52718459787361 38.0 37.0 38.0 31.0 38.0 46-47 35.43957109967147 38.0 37.0 38.0 29.5 38.0 48-49 35.18471104845177 38.0 36.5 38.0 29.0 38.0 50-51 34.510056393408696 38.0 35.0 38.0 24.5 38.0 52-53 35.07653933957627 38.0 36.0 38.0 27.0 38.0 54-55 35.25019239723724 38.0 36.5 38.0 29.0 38.0 56-57 35.316934028765814 38.0 37.0 38.0 29.0 38.0 58-59 35.60037396202499 38.0 37.0 38.0 31.0 38.0 60-61 35.4315486199136 38.0 37.0 38.0 30.5 38.0 62-63 35.4854748169801 38.0 37.0 38.0 31.0 38.0 64-65 35.494076105233205 38.0 37.0 38.0 29.5 38.0 66-67 35.26578142380423 38.0 37.0 38.0 27.0 38.0 68-69 34.62276075484388 38.0 36.0 38.0 24.5 38.0 70-71 34.68286629847117 38.0 35.5 38.0 25.5 38.0 72-73 34.98749417957937 38.0 36.0 38.0 27.0 38.0 74-75 35.11729279302584 38.0 36.5 38.0 28.5 38.0 76 34.141454005742816 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 17.0 13 221.0 14 998.0 15 2002.0 16 2811.0 17 3399.0 18 3614.0 19 3391.0 20 3163.0 21 3029.0 22 3004.0 23 3485.0 24 3984.0 25 4661.0 26 5886.0 27 7333.0 28 8863.0 29 10734.0 30 13730.0 31 17255.0 32 22263.0 33 29631.0 34 41587.0 35 62996.0 36 114559.0 37 245895.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.19063555965142 21.16069263229374 11.454948181921068 28.19372362613377 2 18.68047830923248 22.15478438575161 35.98475049796932 23.17998680704659 3 18.76341930310164 24.121924877771168 31.542961171327317 25.57169464779988 4 13.423021703701787 18.816773158806942 35.31378534288744 32.44641979460383 5 13.973536487570168 34.64977235688232 34.863187779703544 16.51350337584396 6 29.172244750134197 38.601792747521394 17.487049145340603 14.73891335700381 7 25.55038514024797 30.40247317600036 23.315860275903997 20.731281407847675 8 22.237995149555374 36.99288601455134 21.734680679062247 19.034438156831044 9 23.094025026557773 17.00910159540668 23.059746500599065 36.83712687743648 10-11 24.022535147505945 25.790520783734213 26.64201564913852 23.544928419621325 12-13 23.343562200187222 24.149853438338205 27.851404421263325 24.65517994021125 14-15 22.712199822476308 25.94626755633305 25.049675914174248 26.291856707016386 16-17 22.85007518067614 28.326138623466075 25.69319816979515 23.130588026062636 18-19 21.265936780768264 27.831191183163746 27.891256001429266 23.011616034638728 20-21 22.875708151175726 27.054042605478955 27.422103370670253 22.648145872675066 22-23 22.970387155344756 27.56878149259861 26.634179387662215 22.82665196439442 24-25 21.94991224659233 28.248755647786684 26.609290785932615 23.19204131968837 26-27 22.06875254645049 28.19526990758406 27.207004598162026 22.528972947803425 28-29 21.521647037518512 27.97986314570843 27.977437797913556 22.521052018859507 30-31 22.28284286660108 28.147748741126854 27.15689896436514 22.41250942790693 32-33 21.45924412137517 28.534854618827122 27.44441498305611 22.5614862767416 34-35 21.575524359632496 28.091043949603268 27.72612440732911 22.607307283435127 36-37 22.564476980072737 27.920080724580732 27.19870180902621 22.31674048632032 38-39 22.041029165066597 27.53820967318148 28.087313297087533 22.33344786466439 40-41 21.78547263295492 27.629773883463205 27.732844415234393 22.851909068347485 42-43 21.01447107926394 27.409522408305776 28.285014215626436 23.290992296803847 44-45 21.07331451318219 26.236810534110717 29.014965577232143 23.67490937547495 46-47 21.005305590878557 26.880016685569974 28.99376473831384 23.120912985237634 48-49 20.503984161975968 26.748734663785555 29.365177527014453 23.38210364722402 50-51 21.199272433306387 26.662004850444625 28.81794664510913 23.320776071139854 52-53 19.466282051696652 27.131605584247172 29.614571172633696 23.78754119142248 54-55 19.868644012986845 27.085462235962176 28.937526678653196 24.10836707239778 56-57 19.826967295023916 27.344293203199026 28.69333708471989 24.13540241705717 58-59 19.3419004846814 27.064221296067974 29.13303069379373 24.46084752545689 60-61 19.56089325305764 26.879500751169612 28.729609666720034 24.82999632905272 62-63 19.88628141186971 26.89906242395383 28.736055001443113 24.478601162733355 64-65 20.341226448809564 26.33391387593853 28.14491572429563 25.17994395095628 66-67 20.167251905496126 27.155593753966834 27.244370024021336 25.4327843165157 68-69 20.571178200549383 27.240097589210215 27.07356861882812 25.11515559141228 70-71 20.74097427689124 27.368757174500008 26.904253771159723 24.986014777449032 72-73 20.70937798865131 27.7059850230927 26.789876238003963 24.794760750252028 74-75 21.414365659273585 28.0723440928369 25.96970544626096 24.54358480162856 76 21.668517916705067 28.593648191352965 25.370694631051528 24.367139260890443 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 1.0 6 3.5 7 4.0 8 3.0 9 4.5 10 7.0 11 15.5 12 23.0 13 35.5 14 71.0 15 142.0 16 276.5 17 363.0 18 473.0 19 795.5 20 1252.0 21 1496.0 22 1902.5 23 2775.5 24 3832.0 25 4422.0 26 5093.5 27 6670.0 28 8540.0 29 9505.0 30 10413.0 31 12416.5 32 14734.5 33 15957.0 34 17366.5 35 20076.5 36 22730.0 37 24083.0 38 25447.0 39 28020.0 40 29840.0 41 31004.5 42 31558.0 43 31672.0 44 32216.0 45 32047.0 46 31448.0 47 30896.0 48 29443.0 49 27645.5 50 26749.0 51 25723.0 52 23611.0 53 21766.0 54 21007.0 55 19724.5 56 17332.0 57 14993.0 58 13764.0 59 12636.0 60 10440.0 61 8431.5 62 7491.0 63 6770.0 64 5374.0 65 4296.0 66 3516.0 67 3139.0 68 2835.5 69 2284.0 70 1903.0 71 1770.0 72 1585.5 73 1285.5 74 1039.0 75 908.0 76 861.5 77 775.5 78 668.5 79 601.0 80 585.5 81 511.0 82 432.0 83 412.0 84 341.0 85 242.0 86 189.0 87 164.0 88 145.0 89 107.0 90 76.5 91 53.5 92 42.0 93 34.0 94 23.0 95 16.0 96 12.0 97 10.5 98 7.5 99 14.0 100 22.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.233567012442766E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0032335670124427657 7 0.005820420622396978 8 0.0019401402074656596 9 0.007922239180484777 10-11 0.0018593010321545905 12-13 1.616783506221383E-4 14-15 4.850350518664149E-4 16-17 3.233567012442766E-4 18-19 0.002182657733398867 20-21 0.0 22-23 0.002182657733398867 24-25 0.00282937113588742 26-27 6.467134024885532E-4 28-29 0.007113847427374085 30-31 4.041958765553457E-4 32-33 0.0 34-35 0.003152727837131697 36-37 0.018269653620301626 38-39 0.008003078355795846 40-41 5.65874227177484E-4 42-43 4.041958765553457E-4 44-45 0.004203637116175596 46-47 0.002182657733398867 48-49 8.083917531106915E-5 50-51 0.0019401402074656596 52-53 0.009377344336084021 54-55 0.006467134024885531 56-57 0.011964197946038233 58-59 0.010428253615127921 60-61 0.023120004138965776 62-63 0.008973148459528674 64-65 0.020209793827767285 66-67 0.016733709289391316 68-69 1.616783506221383E-4 70-71 3.233567012442766E-4 72-73 0.004284476291486665 74-75 0.008245595881729054 76 0.0017784618568435213 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 618512.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.26829946695067 #Duplication Level Percentage of deduplicated Percentage of total 1 70.79896524971947 44.79330135369485 2 14.458054583353347 18.294730541782364 3 7.730364737275123 14.672610935600341 4 3.8106136838500624 9.643641908107433 5 1.7461606697017011 5.523830808404919 6 0.7193862075921522 2.730860520860054 7 0.29584589091749064 1.3102366495844235 8 0.15537047175425367 0.7864020428215617 9 0.08234624187517095 0.4688916021842643 >10 0.20289226396125745 1.7754936369597918 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.083917531106914E-4 0.0 2 0.0 0.0 0.0 0.001131748454354968 0.0 3 0.0 0.0 0.0 0.0012934268049771063 0.0 4 0.0 0.0 0.0 0.0012934268049771063 0.0 5 0.0 0.0 0.0 0.0012934268049771063 0.0 6 0.0 0.0 0.0 0.0012934268049771063 0.0 7 0.0 0.0 0.0 0.0016167835062213828 0.0 8 0.0 0.0 0.0 0.0017784618568435213 0.0 9 0.0 0.0 0.0 0.003395245363064904 0.0 10 0.0 0.0 0.0 0.0035569237136870427 0.0 11 0.0 0.0 0.0 0.003880280414931319 0.0 12 0.0 0.0 0.0 0.0040419587655534574 0.0 13 0.0 0.0 0.0 0.004203637116175596 0.0 14 0.0 0.0 0.0 0.005012028869286287 0.0 15 0.0 0.0 0.0 0.005173707219908425 0.0 16 0.0 0.0 0.0 0.0053353855705305635 0.0 17 0.0 0.0 0.0 0.006305455674263393 0.0 18 0.0 0.0 0.0 0.006467134024885531 0.0 19 0.0 0.0 0.0 0.0075988824792405 0.0 20 0.0 0.0 0.0 0.008892309284217605 0.0 21 0.0 0.0 0.0 0.01050909279043899 0.0 22 0.0 0.0 0.0 0.014066016504126031 0.0 23 0.0 0.0 0.0 0.015359443309103138 0.0 24 0.0 0.0 0.0 0.01891636702279018 0.0 25 0.0 0.0 0.0 0.021664898983366532 0.0 26 0.0 0.0 0.0 0.024090074242698607 0.0 27 0.0 0.0 0.0 0.033629096929404766 0.0 28 0.0 0.0 0.0 0.04526993817419872 0.0 29 0.0 0.0 0.0 0.06709651550818739 0.0 30 0.0 0.0 0.0 0.09458183511395091 0.0 31 0.0 0.0 0.0 0.12174379801847013 0.0 32 0.0 0.0 0.0 0.15375611144165352 0.0 33 0.0 0.0 0.0 0.21179863931500117 0.0 34 0.0 0.0 0.0 0.29247613627544816 0.0 35 0.0 0.0 0.0 0.4093695837752542 0.0 36 0.0 0.0 0.0 0.591581084926404 0.0 37 0.0 0.0 0.0 0.8984465944072225 0.0 38 0.0 0.0 0.0 1.2877680627053314 0.0 39 0.0 0.0 0.0 1.7065149908166697 0.0 40 0.0 0.0 0.0 2.2251791396124894 0.0 41 0.0 0.0 0.0 2.7819993791551334 0.0 42 0.0 0.0 0.0 3.451347750730786 0.0 43 0.0 0.0 0.0 4.179223685231653 0.0 44 0.0 0.0 0.0 5.0217295703236156 0.0 45 0.0 0.0 0.0 5.930846935871899 0.0 46 0.0 0.0 0.0 6.814095765320641 0.0 47 0.0 0.0 0.0 7.644475774115943 0.0 48 0.0 0.0 0.0 8.372190030266188 0.0 49 0.0 0.0 0.0 9.070155469901959 0.0 50 0.0 0.0 0.0 9.788977416767985 0.0 51 0.0 0.0 0.0 10.494218382181753 0.0 52 0.0 0.0 0.0 11.28126859301032 0.0 53 0.0 0.0 0.0 12.074947616214398 0.0 54 0.0 0.0 0.0 12.877842305403938 0.0 55 0.0 0.0 0.0 13.717923015236568 0.0 56 0.0 0.0 0.0 14.470212380681378 0.0 57 0.0 0.0 0.0 15.155890265669866 0.0 58 0.0 0.0 0.0 15.791771218666735 0.0 59 0.0 0.0 0.0 16.377531882970743 0.0 60 0.0 0.0 0.0 17.015191297824455 0.0 61 0.0 0.0 0.0 17.630862456993558 0.0 62 0.0 0.0 0.0 18.25106060998008 0.0 63 0.0 0.0 0.0 18.872875546472827 0.0 64 0.0 0.0 0.0 19.511666709780894 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCGC 20 0.0069496697 52.501637 49 ACCGACG 35 0.0012551267 40.001244 20 TCGCCGT 60 1.214706E-5 35.003925 52 GTAACCG 50 1.7092585E-4 35.00109 5 TCCGGTG 40 0.0024182023 35.00109 8 TGGTCGC 85 3.9541465E-6 28.824429 49 ACAACCG 50 0.0072067375 28.000872 8 TGTTCCG 50 0.0072067375 28.000872 5 TCGAGTA 50 0.0072067375 28.000872 24 CCGAACG 50 0.0072067375 28.000872 35 GTAGATC 165 3.6379788E-12 27.576618 38 GTCGCTT 90 6.1680203E-6 27.22307 48 TCGCTTA 90 6.1680203E-6 27.22307 49 GAACCGT 65 7.9537043E-4 26.923916 6 CGACGAT 80 8.66248E-5 26.250818 22 CGCTTAT 95 9.380525E-6 25.792364 50 GTTGTCG 70 0.0012262692 24.998756 17 ACATCGT 85 1.3077876E-4 24.706652 6 TCGGTGG 100 1.3979425E-5 24.498783 45 GTCGCCG 120 2.1641372E-6 23.335949 51 >>END_MODULE