FastQCFastQC Report
Wed 25 May 2016
SRR1779799_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779799_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70210
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGTTCT150.002213409970.02209534
TCGTGTA150.002213409970.02209534
TCAGCTC150.002213409970.02209538
ACGTGTC150.002213409970.02209534
ACGTGTA301.0081203E-770.02209534
CGTGTCG150.002213409970.02209510
GACGCGA150.002213409970.02209523
CACGTGT252.8079958E-670.02209533
TACGTGT150.002213409970.02209533
CGCGAGG150.002219679869.9722311
GGTGGAC207.892455E-569.9722247
GTGTACA352.9291732E-760.0189436
GACGACT352.9291732E-760.0189423
CGACGCG308.283187E-658.3517522
TCTCGGT601.8189894E-1258.3101943
CTCTCGG308.318302E-658.3101942
ACGACTC308.318302E-658.3101924
CTCGGTG553.45608E-1157.2544
CTTCCGA509.567884E-1056.01767718
AGTGTAC252.3718386E-456.01767735
Produced by FastQC (version 0.11.5)