##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779799_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 70210 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.690457199829083 32.0 21.0 34.0 12.0 34.0 2 26.954678820680815 33.0 21.0 34.0 12.0 34.0 3 26.47617148554337 33.0 21.0 34.0 11.0 34.0 4 26.88346389403219 33.0 21.0 34.0 12.0 34.0 5 27.02684802734653 34.0 21.0 34.0 11.0 34.0 6 29.456430707876372 36.0 21.0 38.0 11.0 38.0 7 29.595114656031903 36.0 21.0 38.0 12.0 38.0 8 29.207577268195415 34.0 21.0 38.0 11.0 38.0 9 29.736319612590798 36.0 21.0 38.0 11.0 38.0 10-11 28.469911693490957 34.0 21.0 38.0 11.0 38.0 12-13 28.977367896311065 34.5 21.0 38.0 11.0 38.0 14-15 28.03886910696482 34.0 21.0 38.0 11.0 38.0 16-17 28.378343540806153 34.5 21.0 38.0 11.0 38.0 18-19 28.814577695484974 35.5 21.0 38.0 11.0 38.0 20-21 28.17021079618288 33.0 16.0 38.0 11.0 38.0 22-23 28.72536675687224 35.0 21.0 38.0 11.0 38.0 24-25 28.98498789346247 35.0 21.0 38.0 11.0 38.0 26-27 28.039716564591938 34.0 21.0 38.0 11.0 38.0 28-29 28.76691354507905 35.0 21.0 38.0 11.0 38.0 30-31 29.009692351516875 36.0 21.0 38.0 11.0 38.0 32-33 29.182794473721692 36.5 21.0 38.0 11.0 38.0 34-35 29.205398091439967 36.0 21.0 38.0 11.0 38.0 36-37 28.829661016949153 35.5 21.0 38.0 11.0 38.0 38-39 28.68118501637943 35.0 21.0 38.0 11.0 38.0 40-41 28.686191425722832 35.0 21.0 38.0 11.0 38.0 42-43 28.992422731804588 35.5 21.0 38.0 11.0 38.0 44-45 29.08497365047714 36.0 21.0 38.0 11.0 38.0 46-47 29.03595641646489 36.0 21.0 38.0 11.0 38.0 48-49 28.736910696481985 35.5 21.0 38.0 11.0 38.0 50-51 28.259044295684376 34.5 16.0 38.0 11.0 38.0 52-53 28.709143996581684 34.5 21.0 38.0 11.0 38.0 54-55 28.797799458766555 35.5 21.0 38.0 11.0 38.0 56-57 28.80399515738499 36.0 21.0 38.0 11.0 38.0 58-59 28.85995584674548 36.0 21.0 38.0 11.0 38.0 60-61 28.88352086597351 36.0 21.0 38.0 11.0 38.0 62-63 28.792629255091867 36.0 21.0 38.0 11.0 38.0 64-65 28.850740635237145 36.0 21.0 38.0 11.0 38.0 66-67 28.874540663723117 36.0 21.0 38.0 11.0 38.0 68-69 28.446966244124766 34.0 21.0 38.0 11.0 38.0 70-71 28.594117647058823 34.0 21.0 38.0 11.0 38.0 72-73 28.595157384987893 34.5 20.5 38.0 11.0 38.0 74-75 28.562427004700186 35.0 20.0 38.0 11.0 38.0 76 27.81506907847885 34.0 19.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 43.0 13 423.0 14 1514.0 15 2617.0 16 3512.0 17 4124.0 18 4087.0 19 3618.0 20 2810.0 21 2020.0 22 1349.0 23 1014.0 24 859.0 25 717.0 26 682.0 27 683.0 28 820.0 29 877.0 30 1060.0 31 1285.0 32 1601.0 33 2224.0 34 2928.0 35 4416.0 36 7983.0 37 16944.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.31049708018801 19.54137587238285 9.933057968950292 40.21506907847885 2 15.912263210368893 21.34453781512605 35.96638655462185 26.776812419883207 3 21.273322888477423 20.43725964962256 32.03674690215069 26.252670559749326 4 12.726107392109387 26.232730380287713 30.65090442956844 30.39025779803447 5 13.602050989887479 30.22931206380857 37.15710012818687 19.01153681811708 6 21.88243337558933 44.3502784622616 15.140940362072158 18.626347800076914 7 20.1475741431868 35.93060026779864 17.3271416768753 26.594683912139256 8 17.711909068896265 38.85082684062843 15.670802056774965 27.766462033700346 9 22.07834757834758 19.17948717948718 17.03988603988604 41.7022792022792 10-11 20.02578090503796 29.559018331505406 22.264161693278446 28.151039070178186 12-13 19.217347956131604 23.583535108958838 25.518444666001994 31.68067226890756 14-15 25.567234969875656 25.775185517526246 20.827814097907677 27.82976541469042 16-17 27.38486080745209 24.861662049466947 20.370040664591894 27.38343647848907 18-19 21.40201692163063 24.946585761900693 23.313534455744524 30.337862860724158 20-21 24.78849166785358 23.994445235721408 22.167070217917676 29.049992878507336 22-23 26.965587967183225 24.07275524156791 20.82668641750228 28.134970373746583 24-25 21.352267547857796 29.325005697356428 20.234161349134002 29.088565405651778 26-27 23.577293671084398 29.97600039880643 21.668720045008154 24.77798588510102 28-29 22.254271449835837 27.904906380645116 24.15657115996838 25.684251009550668 30-31 23.371481067376923 26.36110497867098 24.006722736951552 26.26069121700055 32-33 19.95655889474434 29.270759151118074 24.004415325452214 26.76826662868537 34-35 19.835487661574618 31.68607342520386 22.4035893601111 26.074849553110425 36-37 24.130979855828134 25.599054050203723 23.202125537795254 27.06784055617289 38-39 24.58155866725545 23.670602982863493 25.409894445948062 26.33794390393299 40-41 20.987337805694427 27.321283596120153 24.57234827443775 27.119030323747666 42-43 17.872352547394208 26.67677933028529 25.782307111623865 29.668561010696635 44-45 17.475126592645875 24.29225630470547 28.94573786954013 29.286879233108515 46-47 19.091401142336235 26.717421339752445 26.2609141538593 27.930263364052017 48-49 20.06053268765133 27.496083179034326 24.71727674120496 27.726107392109384 50-51 24.038571103008206 27.106597538742022 21.79737351868733 27.057457839562442 52-53 16.364206147972993 29.773368280105977 24.938748183812425 28.923677388108597 54-55 18.188228255605253 26.197259337340817 24.57123728668699 31.043275120366943 56-57 20.19629350009259 27.896326263158645 22.590134043674592 29.31724619307417 58-59 19.20285468052222 27.770457475374105 22.870919722793996 30.155768121309677 60-61 17.62204286904923 25.545479801397626 24.338051445708466 32.49442588384468 62-63 19.61227004351635 26.114082631207847 23.260236313004338 31.01341101227147 64-65 20.145171170914477 25.314490048865274 22.448819682874362 32.09151909734589 66-67 17.86090771816861 30.57636969714237 20.22992108037266 31.33280150431636 68-69 18.73606848076115 33.13440488822737 19.480981918401355 28.648544712610118 70-71 17.649320960838633 33.575940577842026 20.98149110875309 27.793247352566247 72-73 19.046262534184137 33.8836030082042 20.341698951686418 26.72843550592525 74-75 20.51933992835217 33.570497617674086 19.287225177873214 26.622937276100533 76 18.990983805033686 36.25279530531144 18.426937484866183 26.329283404788693 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 2.0 15 8.0 16 18.0 17 23.0 18 22.0 19 22.0 20 46.5 21 70.0 22 80.5 23 85.0 24 106.5 25 134.0 26 174.5 27 233.0 28 308.5 29 366.0 30 416.5 31 554.5 32 775.5 33 909.0 34 1018.0 35 1243.0 36 1550.5 37 1742.0 38 1892.0 39 2307.5 40 2735.5 41 3061.5 42 3225.0 43 3345.0 44 3612.5 45 3903.5 46 4047.0 47 3998.0 48 4030.0 49 4148.5 50 4186.0 51 3984.5 52 3576.5 53 3242.0 54 3114.0 55 2905.0 56 2567.0 57 2200.0 58 1962.0 59 1847.0 60 1629.0 61 1369.0 62 1212.0 63 1149.5 64 981.5 65 807.0 66 691.0 67 644.0 68 571.0 69 462.5 70 421.5 71 416.0 72 383.5 73 313.0 74 255.0 75 235.0 76 238.0 77 211.0 78 159.5 79 138.0 80 127.0 81 103.0 82 78.0 83 66.0 84 62.0 85 46.5 86 32.0 87 29.0 88 26.0 89 18.5 90 12.5 91 10.0 92 9.0 93 8.0 94 5.5 95 3.5 96 3.0 97 3.0 98 3.5 99 5.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.004272895598917533 7 0.011394388263780088 8 0.004272895598917533 9 0.01424298532972511 10-11 0.004272895598917533 12-13 0.0 14-15 0.001424298532972511 16-17 0.0021364477994587666 18-19 0.005697194131890044 20-21 0.0 22-23 0.002848597065945022 24-25 0.002848597065945022 26-27 7.121492664862555E-4 28-29 0.007833641931348811 30-31 7.121492664862555E-4 32-33 0.0 34-35 0.0035607463324312774 36-37 0.022788776527560176 38-39 0.0128186867967526 40-41 0.001424298532972511 42-43 0.001424298532972511 44-45 0.0064093433983763 46-47 0.004272895598917533 48-49 0.0 50-51 0.002848597065945022 52-53 0.011394388263780088 54-55 0.011394388263780088 56-57 0.0128186867967526 58-59 0.013530836063238856 60-61 0.027773821392963964 62-63 0.009257940464321322 64-65 0.024213075060532687 66-67 0.017091582395670133 68-69 7.121492664862555E-4 70-71 7.121492664862555E-4 72-73 0.002848597065945022 74-75 0.007833641931348811 76 0.004272895598917533 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 70210.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.87337986041875 #Duplication Level Percentage of deduplicated Percentage of total 1 86.322841612944 68.08574277168495 2 6.878306878306878 10.850306224184589 3 3.470755006591184 8.212505341119499 4 1.794969030463911 5.663010967098704 5 0.8505336150387346 3.3542230451502633 6 0.3593549668634993 1.7006124483691782 7 0.14085270057966304 0.7776669990029911 8 0.08667858497210033 0.5469306366614443 9 0.04875670404680643 0.3461045435123202 >10 0.04695090019322101 0.4628970232160661 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.005697194131890044 0.0 5 0.0 0.0 0.0 0.009970089730807577 0.0 6 0.0 0.0 0.0 0.009970089730807577 0.0 7 0.0 0.0 0.0 0.009970089730807577 0.0 8 0.0 0.0 0.0 0.009970089730807577 0.0 9 0.0 0.0 0.0 0.009970089730807577 0.0 10 0.0 0.0 0.0 0.01424298532972511 0.0 11 0.0 0.0 0.0 0.017091582395670133 0.0 12 0.0 0.0 0.0 0.017091582395670133 0.0 13 0.0 0.0 0.0 0.017091582395670133 0.0 14 0.0 0.0 0.0 0.017091582395670133 0.0 15 0.0 0.0 0.0 0.018515880928642644 0.0 16 0.0 0.0 0.0 0.018515880928642644 0.0 17 0.0 0.0 0.0 0.018515880928642644 0.0 18 0.0 0.0 0.0 0.018515880928642644 0.0 19 0.0 0.0 0.0 0.025637373593505198 0.0 20 0.0 0.0 0.0 0.02991026919242273 0.0 21 0.0 0.0 0.0 0.02991026919242273 0.0 22 0.0 0.0 0.0 0.05269904571998291 0.0 23 0.0 0.0 0.0 0.05269904571998291 0.0 24 0.0 0.0 0.0 0.07548782224754308 0.0 25 0.0 0.0 0.0 0.0783364193134881 0.0 26 0.0 0.0 0.0 0.08260931491240564 0.0 27 0.0 0.0 0.0 0.0911551061102407 0.0 28 0.0 0.0 0.0 0.1410055547642786 0.0 29 0.0 0.0 0.0 0.18658310781939894 0.0 30 0.0 0.0 0.0 0.22076627261073922 0.0 31 0.0 0.0 0.0 0.25637373593505197 0.0 32 0.0 0.0 0.0 0.27916251246261214 0.0 33 0.0 0.0 0.0 0.3190428713858425 0.0 34 0.0 0.0 0.0 0.4116222760290557 0.0 35 0.0 0.0 0.0 0.5227175616009115 0.0 36 0.0 0.0 0.0 0.7121492664862555 0.0 37 0.0 0.0 0.0 1.1551061102407065 0.0 38 0.0 0.0 0.0 1.5197265346816693 0.0 39 0.0 0.0 0.0 1.9171058253809998 0.0 40 0.0 0.0 0.0 2.3728813559322033 0.0 41 0.0 0.0 0.0 2.8030195128899016 0.0 42 0.001424298532972511 0.0 0.0 3.2901296111665004 0.0 43 0.001424298532972511 0.0 0.0 3.8812135023500924 0.0 44 0.001424298532972511 0.0 0.0 4.53211793191853 0.0 45 0.001424298532972511 0.0 0.0 5.151687793761573 0.0 46 0.001424298532972511 0.0 0.0 5.761287565873807 0.0 47 0.001424298532972511 0.0 0.0 6.316763993733087 0.0 48 0.001424298532972511 0.0 0.0 6.838057256801026 0.0 49 0.001424298532972511 0.0 0.0 7.228315054835494 0.0 50 0.001424298532972511 0.0 0.0 7.6456345249964395 0.0 51 0.001424298532972511 0.0 0.0 8.057256801025495 0.0 52 0.001424298532972511 0.0 0.0 8.567155675829653 0.0 53 0.001424298532972511 0.0 0.0 9.057114371172197 0.0 54 0.001424298532972511 0.0 0.0 9.594074918102834 0.0 55 0.001424298532972511 0.0 0.0 10.03418316479134 0.0 56 0.001424298532972511 0.0 0.0 10.383136305369606 0.0 57 0.001424298532972511 0.0 0.0 10.833214641788919 0.0 58 0.001424298532972511 0.0 0.0 11.20780515596069 0.0 59 0.001424298532972511 0.0 0.0 11.632246118786497 0.0 60 0.001424298532972511 0.0 0.0 12.036746902150691 0.0 61 0.001424298532972511 0.0 0.0 12.397094430992736 0.0 62 0.001424298532972511 0.0 0.0 12.76741204956559 0.0 63 0.001424298532972511 0.0 0.0 13.086454920951432 0.0 64 0.001424298532972511 0.0 0.0 13.488107107249679 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGTTCT 15 0.0022134099 70.022095 34 TCGTGTA 15 0.0022134099 70.022095 34 TCAGCTC 15 0.0022134099 70.022095 38 ACGTGTC 15 0.0022134099 70.022095 34 ACGTGTA 30 1.0081203E-7 70.022095 34 CGTGTCG 15 0.0022134099 70.022095 10 GACGCGA 15 0.0022134099 70.022095 23 CACGTGT 25 2.8079958E-6 70.022095 33 TACGTGT 15 0.0022134099 70.022095 33 CGCGAGG 15 0.0022196798 69.97223 11 GGTGGAC 20 7.892455E-5 69.97222 47 GTGTACA 35 2.9291732E-7 60.01894 36 GACGACT 35 2.9291732E-7 60.01894 23 CGACGCG 30 8.283187E-6 58.35175 22 TCTCGGT 60 1.8189894E-12 58.31019 43 CTCTCGG 30 8.318302E-6 58.31019 42 ACGACTC 30 8.318302E-6 58.31019 24 CTCGGTG 55 3.45608E-11 57.25 44 CTTCCGA 50 9.567884E-10 56.017677 18 AGTGTAC 25 2.3718386E-4 56.017677 35 >>END_MODULE