##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779798_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 149714 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.912793726705587 34.0 23.0 34.0 12.0 34.0 2 29.54053061169964 34.0 31.0 34.0 12.0 34.0 3 29.28047477189842 34.0 27.0 34.0 11.0 34.0 4 29.359171486968485 34.0 27.0 34.0 12.0 34.0 5 30.0500554390371 34.0 32.0 34.0 11.0 34.0 6 32.527305395620985 37.0 31.0 38.0 12.0 38.0 7 32.868475894037964 38.0 34.0 38.0 12.0 38.0 8 32.159183509892195 37.0 31.0 38.0 11.0 38.0 9 33.01912980749963 38.0 34.0 38.0 12.0 38.0 10-11 31.648680150152963 37.0 28.5 38.0 11.5 38.0 12-13 32.45821366071309 37.0 31.0 38.0 11.0 38.0 14-15 31.2970463684091 37.0 27.0 38.0 11.0 38.0 16-17 31.88653031780595 37.0 28.5 38.0 11.0 38.0 18-19 32.68144929665897 37.5 32.0 38.0 11.0 38.0 20-21 31.48960685039475 37.0 27.5 38.0 11.0 38.0 22-23 32.30442042828326 37.0 31.0 38.0 11.0 38.0 24-25 32.599917175414454 37.5 32.0 38.0 11.0 38.0 26-27 31.543606476348238 37.0 26.5 38.0 11.0 38.0 28-29 32.66230947005624 37.5 32.5 38.0 11.0 38.0 30-31 33.029806831692426 38.0 34.0 38.0 11.0 38.0 32-33 33.168621505002875 38.0 34.0 38.0 11.0 38.0 34-35 33.11349306010126 38.0 34.0 38.0 11.0 38.0 36-37 32.62513191819069 38.0 32.5 38.0 11.0 38.0 38-39 32.57161988858758 38.0 32.5 38.0 11.0 38.0 40-41 32.53374433920675 37.5 32.0 38.0 11.0 38.0 42-43 32.89680991757618 38.0 33.0 38.0 11.0 38.0 44-45 32.95767596884727 38.0 34.0 38.0 11.0 38.0 46-47 32.88485712758994 38.0 34.0 38.0 11.0 38.0 48-49 32.62026931349106 38.0 32.5 38.0 11.0 38.0 50-51 32.04495237586331 37.5 29.5 38.0 11.0 38.0 52-53 32.554670905860505 37.0 32.0 38.0 11.0 38.0 54-55 32.67881427254632 37.5 32.5 38.0 11.0 38.0 56-57 32.72161254124531 38.0 33.0 38.0 11.0 38.0 58-59 32.912446397798476 38.0 34.0 38.0 11.0 38.0 60-61 32.85406508409367 38.0 34.0 38.0 11.0 38.0 62-63 32.8189815247739 38.0 34.0 38.0 11.0 38.0 64-65 32.82795530144141 38.0 33.5 38.0 11.0 38.0 66-67 32.72513258613088 38.0 32.5 38.0 11.0 38.0 68-69 32.14984904551345 37.0 31.0 38.0 11.0 38.0 70-71 32.257243811533996 37.0 31.0 38.0 11.0 38.0 72-73 32.44739636907704 37.0 31.0 38.0 11.0 38.0 74-75 32.51266080660459 37.5 31.5 38.0 11.0 38.0 76 31.560121297941407 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 49.0 13 463.0 14 1554.0 15 2602.0 16 3403.0 17 3783.0 18 3858.0 19 3442.0 20 2646.0 21 2107.0 22 1546.0 23 1420.0 24 1313.0 25 1408.0 26 1449.0 27 1715.0 28 1928.0 29 2386.0 30 2857.0 31 3704.0 32 4761.0 33 6313.0 34 8560.0 35 13344.0 36 23564.0 37 49537.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 40.81715804801154 17.24354435790908 9.405933980790039 32.53336361328934 2 24.649665361956796 20.945268979520954 28.180397290834524 26.224668367687727 3 18.08314519684198 23.208250397424422 30.178206446958868 28.530397958774728 4 15.91434334798349 21.45089971545747 30.243664587146156 32.39109234941288 5 14.969875896709727 31.299678052820713 34.163137715911674 19.56730833455789 6 28.42171354524991 36.96606173144617 17.549578192942498 17.062646530361427 7 27.132513058928836 31.127676913416963 18.456842077137857 23.282967950516344 8 23.992037833649505 35.51580409864536 19.374382130547467 21.117775937157667 9 24.599198396793586 18.810287241148966 18.59251837007348 37.99799599198397 10-11 23.139993520828533 26.107053279496096 24.19202393953664 26.56092926013873 12-13 23.784014854990183 22.637829461506605 25.341651415365295 28.236504268137917 14-15 25.0457539041105 24.28330015896977 21.989593491590632 28.681352445329093 16-17 25.744753329681924 25.91708190282806 22.281817331712464 26.05634743577755 18-19 22.444133471823765 25.648004969624505 24.73356734208584 27.17429421646589 20-21 24.23353861362331 24.747852572237733 24.526096423848138 26.492512390290823 22-23 25.720383135620388 24.861400555733677 23.28437266217805 26.133843646467884 24-25 22.79570898014802 27.55196783071045 22.951345285489086 26.700977903652444 26-27 23.932965520926565 27.65873598995418 23.890217347743032 24.518081141376225 28-29 22.740055442369993 27.067232223372635 25.229618249223474 24.963094085033898 30-31 23.449710781890808 26.21030765325888 25.0554390370974 25.28454252775292 32-33 21.90109141429659 27.599289311620822 24.930200248473756 25.569419025608823 34-35 22.182033144299943 28.35166890434109 24.34890353953336 25.11739441182561 36-37 24.163663147065012 25.762682424149304 24.28859174736364 25.78506268142205 38-39 24.36206597106251 25.2084140492445 25.819962325152634 24.609557654540353 40-41 22.917772946327485 26.48892718425526 25.119645188977614 25.47365468043964 42-43 21.18439157326636 26.137836140908664 26.24737833469148 26.430393951133496 44-45 20.782066183052113 24.651316580497777 27.538308417832287 27.028308818617823 46-47 21.413327722504434 25.701604095905097 26.59900274195865 26.286065439631823 48-49 21.271891740251412 26.28044137488812 26.285450926433068 26.162215958427403 50-51 23.51748690819707 25.709361974991985 25.079819920914826 25.693331195896118 52-53 19.516814301174396 27.003086296043932 26.21982176974361 27.260277633038065 54-55 20.31349155984262 25.799426857536023 25.986800355375046 27.90028122724631 56-57 20.796285781088216 26.488192658405424 25.382277297170912 27.333244263335448 58-59 20.079492317969272 26.56546426185705 25.654308617234467 27.700734802939213 60-61 19.593400609965894 25.63259743253129 26.098589996692954 28.67541196080986 62-63 20.35496950628912 25.993133070145557 25.589333547089904 28.062563876475423 64-65 20.98608721794465 25.567785145224057 24.908055383895913 28.538072252935383 66-67 19.89117473169461 27.951192301397228 23.55776457266542 28.59986839424275 68-69 20.539161334277356 28.989272880291754 23.131437273735255 27.34012851169563 70-71 20.191164486955127 29.31255593999225 23.699854389035092 26.796425184017526 72-73 20.89608069068016 29.042967119215806 23.09971110331814 26.961241086785897 74-75 21.458654099855384 29.315694375327723 22.844365475112973 26.381286049703924 76 20.974550798209872 30.448867811101465 22.26504575512658 26.311535635562088 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.5 12 2.0 13 3.0 14 3.5 15 4.0 16 10.5 17 16.0 18 23.0 19 39.5 20 63.5 21 78.0 22 107.0 23 151.5 24 203.5 25 240.0 26 324.0 27 507.5 28 707.5 29 808.0 30 913.0 31 1204.0 32 1683.0 33 1976.0 34 2229.0 35 2828.0 36 3390.0 37 3606.0 38 4033.0 39 5180.5 40 6196.0 41 6910.0 42 7329.0 43 7662.0 44 8372.0 45 8906.0 46 9063.0 47 9178.5 48 8993.0 49 8543.5 50 8395.0 51 7956.5 52 7049.5 53 6264.5 54 5948.0 55 5674.0 56 4925.5 57 4149.0 58 3847.0 59 3483.0 60 2890.0 61 2503.0 62 2345.0 63 2162.0 64 1852.5 65 1622.0 66 1467.5 67 1417.0 68 1299.5 69 1171.0 70 1050.5 71 941.0 72 929.5 73 844.5 74 759.0 75 747.0 76 670.5 77 554.5 78 475.5 79 436.0 80 379.0 81 300.0 82 247.0 83 216.0 84 175.5 85 126.0 86 102.5 87 88.0 88 75.5 89 53.0 90 36.5 91 24.0 92 18.0 93 18.0 94 15.0 95 9.5 96 7.0 97 7.5 98 6.5 99 8.0 100 11.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 6.679402059927595E-4 7 0.005343521647942076 8 0.004007641235956557 9 0.009351162883898633 10-11 0.002337790720974658 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0030057309269674176 20-21 0.0 22-23 0.001335880411985519 24-25 0.004007641235956557 26-27 0.0 28-29 0.006011461853934835 30-31 0.0 32-33 0.0 34-35 0.003339701029963798 36-37 0.019036295870793647 38-39 0.008015282471913115 40-41 3.3397010299637977E-4 42-43 0.0 44-45 0.005343521647942076 46-47 0.002337790720974658 48-49 0.0 50-51 0.001335880411985519 52-53 0.013358804119855192 54-55 0.008683222677905873 56-57 0.01269086391386243 58-59 0.009351162883898633 60-61 0.022375996900757446 62-63 0.007347342265920356 64-65 0.021040116488771927 66-67 0.016364535046822608 68-69 0.0 70-71 0.0 72-73 0.0043416113389529365 74-75 0.005009551544945696 76 0.002671760823971038 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 149714.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 67.3777258082176 #Duplication Level Percentage of deduplicated Percentage of total 1 80.2129996760883 54.04569498430125 2 8.881999964133199 11.968979164239304 3 4.819999980536142 9.742819112525352 4 2.6220003892523835 7.066576931843477 5 1.304999998659547 4.396396604470365 6 0.7449999970358586 3.0117843316443005 7 0.39599999840135913 1.8677105518638968 8 0.26099999894605025 1.4068469091945646 9 0.1809999992690959 1.0975831489836656 >10 0.5749999976780668 5.395608260933819 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01269086391386243 0.0 2 0.0 0.0 0.0 0.01269086391386243 0.0 3 0.0 0.0 0.0 0.01269086391386243 0.0 4 0.0 0.0 0.0 0.019370265973790025 0.0 5 0.0 0.0 0.0 0.022042026797761065 0.0 6 0.0 0.0 0.0 0.022042026797761065 0.0 7 0.0 0.0 0.0 0.022709967003753825 0.0 8 0.0 0.0 0.0 0.022709967003753825 0.0 9 0.0 0.0 0.0 0.024713787621732104 0.0 10 0.0 0.0 0.0 0.02538172782772486 0.0 11 0.0 0.0 0.0 0.02538172782772486 0.0 12 0.0 0.0 0.0 0.02538172782772486 0.0 13 0.0 0.0 0.0 0.02538172782772486 0.0 14 0.0 0.0 0.0 0.02671760823971038 0.0 15 0.0 0.0 0.0 0.0280534886516959 0.0 16 0.0 0.0 0.0 0.0280534886516959 0.0 17 0.0 0.0 0.0 0.02872142885768866 0.0 18 0.0 0.0 0.0 0.032729070093645216 0.0 19 0.0 0.0 0.0 0.032729070093645216 0.0 20 0.0 0.0 0.0 0.036736711329601775 0.0 21 0.0 0.0 0.0 0.039408472153572814 0.0 22 0.0 0.0 0.0 0.05209933606743524 0.0 23 0.0 0.0 0.0 0.054103156685413524 0.0 24 0.0 0.0 0.0 0.05877873812736284 0.0 25 0.0 0.0 0.0 0.06479019998129767 0.0 26 0.0 0.0 0.0 0.06479019998129767 0.0 27 0.0 0.0 0.0 0.09351162883898634 0.0 28 0.0 0.0 0.0 0.11421777522476188 0.0 29 0.0 0.0 0.0 0.14761478552439986 0.0 30 0.0 0.0 0.0 0.17700415458808128 0.0 31 0.0 0.0 0.0 0.21708056694764685 0.0 32 0.0 0.0 0.0 0.25314933807125584 0.0 33 0.0 0.0 0.0 0.28454252775291555 0.0 34 0.0 0.0 0.0 0.34398920608627115 0.0 35 0.0 0.0 0.0 0.43816877513125024 0.0 36 0.0 0.0 0.0 0.5597338926219325 0.0 37 0.0 0.0 0.0 0.8322534966669783 0.0 38 0.0 0.0 0.0 1.1849259254311555 0.0 39 0.0 0.0 0.0 1.5656518428470283 0.0 40 0.0 0.0 0.0 1.9730953685026116 0.0 41 0.0 0.0 0.0 2.5622186301882257 0.0 42 0.0 0.0 0.0 3.1967618258813473 0.0 43 0.0 0.0 0.0 3.7685186422111494 0.0 44 0.0 0.0 0.0 4.3836915719304805 0.0 45 0.0 0.0 0.0 4.99352098000187 0.0 46 0.0 0.0 0.0 5.640087099402861 0.0 47 0.0 0.0 0.0 6.289992919833817 0.0 48 0.0 0.0 0.0 6.820337443392067 0.0 49 0.0 0.0 0.0 7.43818213393537 0.0 50 0.0 0.0 0.0 8.022629814179036 0.0 51 0.0 0.0 0.0 8.601066032568765 0.0 52 0.0 0.0 0.0 9.308414710715097 0.0 53 0.0 0.0 0.0 10.053168040397024 0.0 54 0.0 0.0 0.0 10.650306584554551 0.0 55 0.0 0.0 0.0 11.318914730753303 0.0 56 0.0 0.0 0.0 11.890003606877112 0.0 57 0.0 0.0 0.0 12.415672548993415 0.0 58 0.0 0.0 0.0 12.90126507875015 0.0 59 0.0 0.0 0.0 13.46300279199006 0.0 60 0.0 0.0 0.0 13.99735495678427 0.0 61 0.0 0.0 0.0 14.533710942196455 0.0 62 0.0 0.0 0.0 15.028654634837089 0.0 63 0.0 0.0 0.0 15.605754972814834 0.0 64 0.0 0.0 0.0 16.111385708751353 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCTATA 15 0.0022231764 69.983635 1 TAGATCC 20 0.0069283694 52.52281 39 CGAGATT 20 0.0069375355 52.505264 41 ACGAACT 20 0.0069375355 52.505264 24 GGCCCTT 20 0.006946711 52.487724 1 ATACTCG 20 0.006946711 52.487724 5 CAGTCGA 20 0.006946711 52.487724 12 TCGACAG 20 0.006946711 52.487724 45 GTAGATC 110 0.0 50.93121 38 CTTCCGA 55 2.2682798E-9 50.897186 18 GTGGACG 35 2.0774676E-5 50.00501 48 TAGATCT 125 0.0 47.62068 39 CGTGCTT 30 5.8697024E-4 46.655758 10 CGCCGTA 45 1.6786125E-6 46.655758 53 ATCTCGG 95 0.0 44.214962 42 CGACGAT 65 9.946234E-9 43.06685 22 TATCCAC 65 9.946234E-9 43.06685 3 TTCCGAC 75 7.4942363E-10 41.99018 19 GATCTCG 110 0.0 41.367783 41 AGATCTC 145 0.0 41.038593 40 >>END_MODULE