SRR1779798_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779798_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	149714
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	17140	11.448495130715898	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2242	1.497521941835767	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1302	0.8696581482025728	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	445	0.297233391666778	RNA PCR Primer, Index 42 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	349	0.2331111318914731	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	308	0.2057255834457699	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	263	0.17566827417609576	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	188	0.12557275872663878	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	161	0.10753837316483429	RNA PCR Primer, Index 32 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTATTC	15	0.0022240183	69.97695	13
GGTCTAT	15	0.0022240183	69.97695	1
ATTTGCA	25	2.3881842E-4	55.981564	43
GCACGTA	20	0.006912674	52.552925	52
ATTTGTG	20	0.006930986	52.517796	60
CCGAGTG	20	0.006949334	52.482716	4
CGTCCAA	20	0.006949334	52.482716	22
ATCTCGT	2305	0.0	52.36887	37
CTCGTAT	2375	0.0	52.29857	39
CGTCTTC	2395	0.0	52.04269	48
GCCGTCT	2410	0.0	52.009327	46
CGTATGC	2425	0.0	51.941654	41
TCGTATG	2425	0.0	51.941654	40
TCTCGTA	2325	0.0	51.918385	38
GATCTCG	2310	0.0	51.80112	36
CCGTCTT	2420	0.0	51.79441	47
TATGCCG	2420	0.0	51.75981	43
GTCTTCT	2415	0.0	51.75667	49
CTGCTTG	2420	0.0	51.68428	54
ATGCCGT	2420	0.0	51.61523	44