##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779797_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 65141 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.418415437282203 23.0 12.0 34.0 12.0 34.0 2 23.459817933405997 23.0 12.0 34.0 12.0 34.0 3 23.393208578314734 23.0 11.0 34.0 11.0 34.0 4 24.34500544971677 23.0 12.0 34.0 12.0 34.0 5 23.663637340538216 23.0 11.0 34.0 11.0 34.0 6 25.413395557329487 27.0 12.0 37.0 11.0 38.0 7 26.073686311232557 27.0 12.0 37.0 11.0 38.0 8 25.2193856403801 27.0 11.0 37.0 11.0 38.0 9 26.158241353371917 28.0 12.0 37.0 11.0 38.0 10-11 25.250602539107476 26.0 11.5 37.0 11.0 38.0 12-13 25.45581891589015 27.0 11.0 37.0 11.0 38.0 14-15 24.669087057306456 26.0 11.0 36.5 11.0 38.0 16-17 24.77145730031777 26.0 11.0 37.0 11.0 38.0 18-19 24.881464822462043 26.0 11.0 37.0 11.0 38.0 20-21 24.68229686372638 25.5 11.0 36.5 11.0 38.0 22-23 24.928117468261156 26.0 11.0 37.0 11.0 38.0 24-25 25.185697179963462 26.0 11.0 37.0 11.0 38.0 26-27 24.4814018820712 25.5 11.0 37.0 11.0 38.0 28-29 24.67198845581124 26.0 11.0 37.0 11.0 38.0 30-31 24.764925315853304 26.0 11.0 37.5 11.0 38.0 32-33 24.94977049784314 26.0 11.0 38.0 11.0 38.0 34-35 25.088745951090708 26.0 11.0 37.5 11.0 38.0 36-37 24.784513593589292 26.0 11.0 37.0 11.0 38.0 38-39 24.609585360986166 26.0 11.0 37.0 11.0 38.0 40-41 24.63978139727668 26.0 11.0 37.0 11.0 38.0 42-43 24.847361876544724 26.0 11.0 37.0 11.0 38.0 44-45 24.98793386653567 26.0 11.0 37.0 11.0 38.0 46-47 24.85843785020187 26.0 11.0 37.0 11.0 38.0 48-49 24.552263551373173 26.0 11.0 37.0 11.0 38.0 50-51 24.24188299227829 25.0 11.0 37.0 11.0 38.0 52-53 24.647073271825732 26.0 11.0 37.0 11.0 38.0 54-55 24.64814786386454 25.5 11.0 37.0 11.0 38.0 56-57 24.656836708064045 25.5 11.0 37.0 11.0 38.0 58-59 24.515635314164655 25.0 11.0 37.0 11.0 38.0 60-61 24.71552478469781 25.0 11.0 37.0 11.0 38.0 62-63 24.532421976942324 25.0 11.0 37.0 11.0 38.0 64-65 24.523057674889856 25.0 11.0 37.0 11.0 38.0 66-67 24.80044825839333 25.0 11.0 37.0 11.0 38.0 68-69 24.530656575735712 25.0 11.0 37.0 11.0 38.0 70-71 24.702775517723094 25.0 11.0 37.0 11.0 38.0 72-73 24.491456993291475 25.0 11.0 37.0 11.0 38.0 74-75 24.329945809858614 24.5 11.0 37.0 11.0 38.0 76 23.88122687708202 24.0 11.0 36.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 56.0 13 594.0 14 2313.0 15 4033.0 16 5341.0 17 5970.0 18 5963.0 19 5242.0 20 3942.0 21 2770.0 22 1898.0 23 1354.0 24 1033.0 25 780.0 26 635.0 27 603.0 28 578.0 29 601.0 30 650.0 31 739.0 32 917.0 33 1145.0 34 1628.0 35 2283.0 36 4353.0 37 9720.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.33734514361155 20.400362291030227 17.024608157688707 37.23768440766952 2 12.953439462089927 34.046146052409384 28.763758615925454 24.23665586957523 3 10.990006294039084 33.33691530679603 32.197847745659416 23.47523065350547 4 9.841727943998404 33.86653566878003 20.724275034156676 35.567461353064886 5 11.240232725932977 33.161910317618705 33.834297907615785 21.76355904883253 6 16.87928890526413 41.277882681650006 20.829303489460997 21.013524923624864 7 16.273642839597148 36.35316875460575 15.716347334807173 31.656841070989927 8 14.682448302860038 41.81058966210718 20.23058382842844 23.27637820660434 9 18.014339008551207 22.022813454718516 16.864454918095706 43.09839261863457 10-11 15.75335631001635 33.461010001765466 22.60721385969895 28.17841982851923 12-13 15.936199935524478 24.80925991311156 25.77332248507085 33.48121766629312 14-15 25.96828418354032 28.866612425354234 18.399318401621098 26.76578498948435 16-17 26.84484426091095 25.714987488678403 17.818271134922707 29.621897115487943 18-19 18.661488037212447 25.86756115720876 22.67748447562539 32.79346632995341 20-21 25.889992477855728 24.546752429345574 19.036397967485915 30.526857125312784 22-23 27.039661035163 24.44983458577361 17.976803629134398 30.533700749929 24-25 18.57335851026267 32.241821335912434 17.345983205145917 31.838836948678978 26-27 23.97433240457166 31.94172596157536 18.87305132751514 25.21089030633784 28-29 19.46510681743162 30.7049259608963 22.3330185999739 27.49694862169818 30-31 21.277853255655085 28.495329326609404 22.55202216746878 27.674795250266733 32-33 18.041003676668126 31.337647085914295 22.616498184693086 28.004851052724494 34-35 17.356862684894494 34.10118439939514 20.850956039822837 27.69099687588753 36-37 23.665300105946844 26.17040551537765 22.084542509251158 28.079751869424356 38-39 24.2991156420807 23.454676656635755 25.210342074556287 27.03586562672726 40-41 19.46499846484495 29.404359840343876 22.837734111145224 28.29290758366595 42-43 14.844181762357996 28.97988946883635 24.704482652747927 31.47144611605772 44-45 14.538253106841575 24.783346254519216 28.46089486248532 32.217505776153885 46-47 17.35876573533927 27.89146453791833 24.491096100706173 30.25867362603623 48-49 18.95594906394639 28.77395782961445 23.03098686684935 29.23910623958981 50-51 25.550173860313024 27.62498368860198 18.798406472362736 28.026435978722258 52-53 13.418697127416209 31.810295856171216 22.487832588703117 32.283174427709454 54-55 16.646068580113763 27.094288061041983 21.86518872197189 34.39445463687237 56-57 18.783058628445968 29.15070512279193 20.02364483613668 32.04259141262542 58-59 17.5699327540148 29.509165719900516 20.92762612460466 31.993275401480027 60-61 14.525478513900511 27.386427326541114 22.236980506268857 35.85111365328952 62-63 17.09092025670157 28.198022538152117 21.043541007768603 33.66751619737771 64-65 17.46140204064398 27.32144365196963 20.924662003946164 34.29249230344023 66-67 14.929028196801855 34.72052693397204 17.569071800895113 32.78137306833099 68-69 16.088301440731957 38.0746233142208 15.790483646886347 30.046591598160898 70-71 14.511597918361707 39.16273928862007 17.350056032299165 28.975606760719057 72-73 16.07534888005281 38.35838310023489 17.23290909928305 28.333358920429248 74-75 17.91008113730397 37.510458805738715 16.48000736914019 28.099452687817124 76 16.109917101627264 41.28645993245318 15.036843721215842 27.566779244703714 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 2.5 14 3.0 15 3.0 16 5.5 17 7.0 18 6.0 19 16.0 20 26.0 21 25.0 22 31.0 23 50.0 24 69.0 25 75.0 26 95.5 27 158.5 28 236.0 29 271.0 30 335.0 31 490.0 32 684.5 33 788.0 34 910.5 35 1195.0 36 1471.0 37 1585.0 38 1823.5 39 2232.0 40 2667.5 41 3067.0 42 3201.0 43 3467.5 44 3891.0 45 4098.0 46 4148.0 47 4155.5 48 4105.5 49 3899.5 50 3751.0 51 3614.5 52 3361.0 53 3046.0 54 2848.0 55 2606.0 56 2210.0 57 1944.0 58 1832.0 59 1602.5 60 1261.0 61 1047.5 62 946.0 63 850.0 64 697.0 65 573.5 66 480.0 67 453.0 68 419.0 69 336.0 70 264.5 71 242.0 72 213.5 73 188.0 74 182.0 75 173.0 76 158.5 77 136.5 78 133.5 79 138.0 80 129.5 81 100.5 82 80.0 83 80.0 84 69.5 85 57.5 86 44.0 87 32.0 88 34.0 89 32.5 90 22.0 91 12.0 92 9.0 93 8.0 94 4.5 95 2.0 96 2.0 97 6.0 98 10.5 99 6.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0030702629680232113 7 0.007675657420058028 8 0.0030702629680232113 9 0.006140525936046423 10-11 0.003837828710029014 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.002302697226017408 20-21 0.0 22-23 0.002302697226017408 24-25 0.0030702629680232113 26-27 7.675657420058028E-4 28-29 0.009978354646075436 30-31 7.675657420058028E-4 32-33 7.675657420058028E-4 34-35 0.003837828710029014 36-37 0.02149184077616248 38-39 0.013816183356104449 40-41 0.0015351314840116057 42-43 0.0015351314840116057 44-45 0.003837828710029014 46-47 0.0015351314840116057 48-49 7.675657420058028E-4 50-51 0.003837828710029014 52-53 0.012281051872092845 54-55 0.00844322316206383 56-57 0.016118880582121856 58-59 0.01074592038808124 60-61 0.026864800970203096 62-63 0.01074592038808124 64-65 0.02225940651816828 66-67 0.014583749098110254 68-69 7.675657420058028E-4 70-71 0.0 72-73 0.006140525936046423 74-75 0.0069080916780522245 76 0.0015351314840116057 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 65141.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.89304738950892 #Duplication Level Percentage of deduplicated Percentage of total 1 93.08870554564245 80.88761302405551 2 3.102309064890554 5.391381771848759 3 1.7119233962864158 4.4626272240217375 4 1.0158472165786265 3.530802413226693 5 0.5476741515467378 2.3794538002179886 6 0.27560376658481 1.4368830690348628 7 0.12366835680087628 0.7522144271656868 8 0.058300796777555966 0.4052747117790639 9 0.03533381622882179 0.276323667122089 >10 0.04063388866314506 0.47742589152760934 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0015351314840116057 0.0 4 0.0 0.0 0.0 0.0015351314840116057 0.0 5 0.0 0.0 0.0 0.01074592038808124 0.0 6 0.0 0.0 0.0 0.01074592038808124 0.0 7 0.0 0.0 0.0 0.01074592038808124 0.0 8 0.0 0.0 0.0 0.012281051872092845 0.0 9 0.0 0.0 0.0 0.012281051872092845 0.0 10 0.0 0.0 0.0 0.012281051872092845 0.0 11 0.0 0.0 0.0 0.01381618335610445 0.0 12 0.0 0.0 0.0 0.015351314840116056 0.0 13 0.0 0.0 0.0 0.015351314840116056 0.0 14 0.0 0.0 0.0 0.015351314840116056 0.0 15 0.0 0.0 0.0 0.015351314840116056 0.0 16 0.0 0.0 0.0 0.015351314840116056 0.0 17 0.0 0.0 0.0 0.015351314840116056 0.0 18 0.0 0.0 0.0 0.01688644632412766 0.0 19 0.0 0.0 0.0 0.019956709292150872 0.0 20 0.0 0.0 0.0 0.029167498196220505 0.0 21 0.0 0.0 0.0 0.050659338972382985 0.0 22 0.0 0.0 0.0 0.08596736310464992 0.0 23 0.0 0.0 0.0 0.10438894091278918 0.0 24 0.0 0.0 0.0 0.11359972981685881 0.0 25 0.0 0.0 0.0 0.11666999278488202 0.0 26 0.0 0.0 0.0 0.11974025575290524 0.0 27 0.0 0.0 0.0 0.12127538723691685 0.0 28 0.0 0.0 0.0 0.1381618335610445 0.0 29 0.0 0.0 0.0 0.15965367433720698 0.0 30 0.0 0.0 0.0 0.19035630401743908 0.0 31 0.0 0.0 0.0 0.22412919666569442 0.0 32 0.0 0.0 0.0 0.23333998556976404 0.0 33 0.0 0.0 0.0 0.26404261524999617 0.0 34 0.0 0.0 0.0 0.3300532690624952 0.0 35 0.0 0.0 0.0 0.3945287913909826 0.0 36 0.0 0.0 0.0 0.5158041786278995 0.0 37 0.0 0.0 0.0 0.6708524585130716 0.0 38 0.0 0.0 0.0 0.9134032329869053 0.0 39 0.0 0.0 0.0 1.2710888687616095 0.0 40 0.0 0.0 0.0 1.7070662102209053 0.0 41 0.0 0.0 0.0 2.101595001611888 0.0 42 0.0 0.0 0.0 2.4807724781627547 0.0 43 0.0 0.0 0.0 2.8753012695537374 0.0 44 0.0 0.0 0.0 3.226846379392395 0.0 45 0.0 0.0 0.0 3.596813067039192 0.0 46 0.0 0.0 0.0 4.048141723338604 0.0 47 0.0 0.0 0.0 4.456486698085691 0.0 48 0.0 0.0 0.0 4.843339832056616 0.0 49 0.0 0.0 0.0 5.170322838151088 0.0 50 0.0 0.0 0.0 5.558711103606024 0.0 51 0.0 0.0 0.0 5.922537265316774 0.0 52 0.0 0.0 0.0 6.304785004835664 0.0 53 0.0 0.0 0.0 6.5872491978938 0.0 54 0.0 0.0 0.0 6.851291813143796 0.0 55 0.0 0.0 0.0 7.17059916181821 0.0 56 0.0 0.0 0.0 7.565127953209192 0.0 57 0.0 0.0 0.0 7.8614083296234325 0.0 58 0.0 0.0 0.0 8.19299673016994 0.0 59 0.0 0.0 0.0 8.487741975100167 0.0 60 0.0 0.0 0.0 8.7963034033865 0.0 61 0.0 0.0 0.0 9.043459572312369 0.0 62 0.0 0.0 0.0 9.29215087272225 0.0 63 0.0 0.0 0.0 9.566939408360327 0.0 64 0.0 0.0 0.0 9.81102531431817 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTCGAT 30 1.00679244E-7 70.023834 37 GCCGTAT 15 0.0022124662 70.023834 54 AGATCTA 20 7.889363E-5 69.97005 40 ACATTTG 20 7.889363E-5 69.97005 8 CTAGGCG 15 0.002219226 69.97005 44 TAGTCCA 15 0.002219226 69.97005 20 GATCTCG 95 0.0 62.604774 41 TATGACG 40 1.0499207E-8 61.22379 11 GACGATC 30 8.275218E-6 58.353195 23 GACGAAA 60 1.8189894E-12 58.353195 23 TCTTACG 30 8.31306E-6 58.308376 11 TCGGCGG 30 8.31306E-6 58.308376 45 TTGCCGA 30 8.31306E-6 58.308376 18 CATTTGA 30 8.31306E-6 58.308376 9 TGGTCGC 60 1.8189894E-12 58.308376 49 GGTGGTC 55 3.45608E-11 57.248222 47 GTCGATC 25 2.3702598E-4 56.019066 38 ACGTGTA 25 2.3702598E-4 56.019066 34 GTCATCG 25 2.3792885E-4 55.97604 4 CTGACGT 25 2.3792885E-4 55.97604 12 >>END_MODULE