##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779796_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 125260 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.59740539677471 34.0 34.0 34.0 34.0 34.0 2 33.67215391984672 34.0 34.0 34.0 34.0 34.0 3 33.75942040555644 34.0 34.0 34.0 34.0 34.0 4 33.60490180424716 34.0 34.0 34.0 34.0 34.0 5 33.63866357975411 34.0 34.0 34.0 34.0 34.0 6 37.34087498004151 38.0 38.0 38.0 37.0 38.0 7 37.40245090212358 38.0 38.0 38.0 37.0 38.0 8 37.30178029698228 38.0 38.0 38.0 37.0 38.0 9 37.239589653520675 38.0 38.0 38.0 36.0 38.0 10-11 37.17495609133003 38.0 38.0 38.0 36.5 38.0 12-13 37.33186172760658 38.0 38.0 38.0 36.5 38.0 14-15 37.353436851349194 38.0 38.0 38.0 37.0 38.0 16-17 37.24260737665655 38.0 38.0 38.0 36.0 38.0 18-19 37.09309037202618 38.0 38.0 38.0 36.0 38.0 20-21 37.13963356219064 38.0 38.0 38.0 36.0 38.0 22-23 37.13704295066262 38.0 38.0 38.0 36.0 38.0 24-25 37.27633322688807 38.0 38.0 38.0 36.0 38.0 26-27 37.19948107935494 38.0 38.0 38.0 36.0 38.0 28-29 36.77297620948427 38.0 37.0 38.0 34.5 38.0 30-31 36.99227606578317 38.0 38.0 38.0 35.5 38.0 32-33 37.02044946511256 38.0 38.0 38.0 36.0 38.0 34-35 37.007444515407954 38.0 38.0 38.0 36.0 38.0 36-37 37.034943317898765 38.0 38.0 38.0 36.0 38.0 38-39 35.93570174038001 38.0 37.0 38.0 32.5 38.0 40-41 36.6942998562989 38.0 37.0 38.0 35.0 38.0 42-43 37.19101868114322 38.0 38.0 38.0 36.5 38.0 44-45 36.9899289477886 38.0 38.0 38.0 35.5 38.0 46-47 37.127542711160785 38.0 38.0 38.0 36.0 38.0 48-49 36.78933418489542 38.0 37.0 38.0 34.5 38.0 50-51 36.92129969663101 38.0 37.5 38.0 35.0 38.0 52-53 36.832991377933894 38.0 37.5 38.0 35.0 38.0 54-55 36.827311192719144 38.0 37.5 38.0 35.0 38.0 56-57 36.722189845122145 38.0 37.0 38.0 34.5 38.0 58-59 36.79652323167811 38.0 37.0 38.0 35.0 38.0 60-61 36.45612725530896 38.0 37.0 38.0 34.0 38.0 62-63 36.321167970621104 38.0 37.0 38.0 34.0 38.0 64-65 36.69144180105381 38.0 37.0 38.0 34.5 38.0 66-67 36.41553967747086 38.0 37.0 38.0 34.0 38.0 68-69 36.45108574165735 38.0 37.0 38.0 34.0 38.0 70-71 35.07266884879451 38.0 35.5 38.0 28.0 38.0 72-73 32.59600830273032 38.0 30.0 38.0 16.0 38.0 74-75 32.2798578955772 38.0 28.5 38.0 11.0 38.0 76 32.12166693277982 38.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 22 5.0 23 9.0 24 32.0 25 55.0 26 136.0 27 205.0 28 436.0 29 728.0 30 1189.0 31 1753.0 32 2875.0 33 4675.0 34 8216.0 35 17873.0 36 21603.0 37 65470.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.01623055049682 14.270423975206874 11.091408671203553 41.62193680309275 2 16.389908989302253 15.692958646016287 45.026345201979886 22.89078716270158 3 15.444675075842248 16.988663579754114 43.80249081909628 23.76417052530736 4 11.367555484592048 31.56793868752994 31.6852945872585 25.379211240619508 5 11.185534089094682 28.963755388791313 47.05492575443078 12.79578476768322 6 23.49513012933099 48.2077279259141 16.12885198786524 12.16828995688967 7 22.740699345361648 25.505348874341372 17.826121666932778 33.9278301133642 8 19.96567140348076 46.434615998722656 15.2474852307201 18.35222736707648 9 19.43796902442919 15.860609931342806 15.714513811272553 48.98690723295545 10-11 20.111368353824048 30.563228484751715 29.369711001117675 19.955692160306562 12-13 19.63595720900527 18.206929586460163 31.45297780616318 30.704135398371385 14-15 17.889589653520677 17.939086699664696 20.08542232157113 44.08590132524349 16-17 29.326201500878174 29.740938847197828 18.901085741657354 22.031773910266644 18-19 29.732157113204533 22.457288839214435 19.49784448347437 28.312709564106658 20-21 18.740619511416252 19.997604981638194 19.716589493852787 41.54518601309277 22-23 18.55261057001437 31.0621906434616 19.286683697908348 31.09851508861568 24-25 29.165003432914467 30.78206581615546 19.31293809577033 20.73999265515975 26-27 29.38288360210762 31.63460003193358 20.265447868433657 18.717068497525148 28-29 18.76417052530736 22.177870030336898 30.033530257065305 29.024429187290433 30-31 27.58023311512055 19.89701421044228 33.69830752035766 18.824445154079513 32-33 20.03073606897653 20.130528500718505 30.639469902602585 29.19926552770238 34-35 18.0360849433179 40.23072010218745 22.78820054287083 18.94499441162382 36-37 29.028820054287085 32.55388791314067 20.109771674916175 18.307520357656077 38-39 18.701900047900367 22.428149449145778 30.859013252434934 28.010937250518918 40-41 17.659667890787162 18.984113044866678 32.85725690563628 30.498962158709887 42-43 28.55791377101138 18.748278573681038 31.70817383112658 20.985633824181 44-45 18.055245090212356 29.534568098355418 33.487945074245566 18.922241737186653 46-47 27.782612166693276 19.226808238863164 24.175315344084307 28.815264250359252 48-49 26.98307520357656 18.727446910426313 22.01939964873064 32.27007823726649 50-51 18.477974465231036 18.43246221285362 33.264665724483194 29.824897597432148 52-53 16.157138978069547 18.830162761352565 43.644480649128695 21.3682176114492 54-55 15.278138316353632 19.468683730236386 34.459678031286316 30.79349992212367 56-57 26.32243222085537 18.973367628968095 24.50873100825971 30.195469141916824 58-59 16.302620334949246 19.279946970362502 42.28075359587263 22.136679098815616 60-61 26.323082513707025 29.30408635127526 24.025333540985308 20.3474975940324 62-63 15.825766831971762 42.95416976114612 20.283813676401298 20.93624973048082 64-65 15.50893302724823 43.912965365804965 19.61153807765246 20.96656352929434 66-67 15.344589360019809 43.80026675824834 19.21258396096065 21.642559920771205 68-69 15.564817476286288 44.130257736897576 18.793315448245025 21.51160933857111 70-71 16.257196010954704 42.21633145165798 19.195883203053267 22.330589334334057 72-73 17.026688174790774 36.7453523286271 20.407030601162717 25.82092889541941 74-75 17.306440859313554 34.96221240103961 20.927902139500716 26.803444600146122 76 17.18821115165646 35.316240408186076 20.988206360740037 26.507342079417423 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 4.5 15 5.0 16 12.5 17 22.0 18 25.5 19 41.5 20 66.5 21 79.0 22 105.0 23 170.5 24 248.5 25 287.0 26 339.0 27 438.0 28 574.5 29 664.0 30 769.0 31 1003.5 32 1294.5 33 1456.0 34 1653.5 35 2069.5 36 2573.0 37 2858.0 38 3211.5 39 7059.5 40 12377.5 41 13348.5 42 12496.0 43 10965.5 44 8411.0 45 6756.5 46 6126.0 47 5923.5 48 5410.5 49 4906.0 50 4712.0 51 4561.5 52 4016.5 53 3440.5 54 3259.0 55 3071.0 56 2732.5 57 2429.5 58 2277.0 59 1984.5 60 1649.0 61 1452.5 62 1299.0 63 1223.0 64 1127.0 65 1061.0 66 986.5 67 958.0 68 835.0 69 697.5 70 644.0 71 605.0 72 553.5 73 508.5 74 479.0 75 443.0 76 429.0 77 383.0 78 294.5 79 238.0 80 246.5 81 219.0 82 141.0 83 99.0 84 106.5 85 87.0 86 60.5 87 61.0 88 41.5 89 18.5 90 9.0 91 3.5 92 4.0 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05109372505189207 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.001596678907871627 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.9916972696790677E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.015168449624780455 52-53 0.03672361488104742 54-55 0.04909787641705254 56-57 0.0590771195912502 58-59 0.03752195433498323 60-61 0.04031614242375858 62-63 0.0295385597956251 64-65 0.0179626377135558 66-67 0.04231199105859811 68-69 0.012773431262973017 70-71 0.013571770716908831 72-73 0.028740220341689285 74-75 0.01636595880568418 76 0.01836180744052371 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 125260.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.41306083346639 #Duplication Level Percentage of deduplicated Percentage of total 1 39.77633368596041 10.506147213795305 2 17.225328698806106 9.099473095960402 3 14.408342149010126 11.417052530736068 4 10.593924739307843 11.192719144180105 5 6.6374489950128455 8.765767204215233 6 3.9081154601783283 6.193517483634041 7 2.3938340637751248 4.42599393262015 8 1.3087501889073598 2.765447868433658 9 0.9248904337312982 2.1986268561392306 >10 2.75049115913556 10.392783011336421 >50 0.03324769533021007 0.5460641864920964 >100 0.03022517757291824 1.9000479003672361 >500 0.0 0.0 >1k 0.006045035514583648 3.466389908989302 >5k 0.0 0.0 >10k+ 0.003022517757291824 17.12996966310075 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT 21457 17.12996966310075 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 2730 2.179466709244771 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 1612 1.2869231997445314 No Hit ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT 480 0.38320293788919046 Illumina PCR Primer Index 9 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT 378 0.30177231358773754 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT 354 0.282612166693278 No Hit TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 340 0.2714354143381766 No Hit CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 160 0.12773431262973017 No Hit CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 151 0.12054925754430784 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAGCTCGTATGCCGT 149 0.11895257863643621 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCGT 139 0.11096918409707808 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001596678907871627 0.0 2 0.0 0.0 0.0 0.005588376177550695 0.0 3 0.0 0.0 0.0 0.005588376177550695 0.0 4 0.0 0.0 0.0 0.005588376177550695 0.0 5 0.0 0.0 0.0 0.007983394539358136 0.0 6 0.0 0.0 0.0 0.007983394539358136 0.0 7 0.0 0.0 0.0 0.010378412901165576 0.0 8 0.0 0.0 0.0 0.010378412901165576 0.0 9 0.0 0.0 0.0 0.01357177071690883 0.0 10 0.0 0.0 0.0 0.01357177071690883 0.0 11 0.0 0.0 0.0 0.014370110170844642 0.0 12 0.0 0.0 0.0 0.014370110170844642 0.0 13 0.0 0.0 0.0 0.014370110170844642 0.0 14 0.0 0.0 0.0 0.014370110170844642 0.0 15 0.0 0.0 0.0 0.014370110170844642 0.0 16 0.0 0.0 0.0 0.014370110170844642 0.0 17 0.0 0.0 0.0 0.01596678907871627 0.0 18 0.0 0.0 0.0 0.020756825802331152 0.0 19 0.0 0.0 0.0 0.020756825802331152 0.0 20 0.0 0.0 0.0 0.025546862525946033 0.0 21 0.0 0.0 0.0 0.02714354143381766 0.0 22 0.0 0.0 0.0 0.03193357815743254 0.0 23 0.0 0.0 0.0 0.03273191761136835 0.0 24 0.0 0.0 0.0 0.03592527542711161 0.0 25 0.0 0.0 0.0 0.04470700942040556 0.0 26 0.0 0.0 0.0 0.053488743413699504 0.0 27 0.0 0.0 0.0 0.08063228484751717 0.0 28 0.0 0.0 0.0 0.11336420245888552 0.0 29 0.0 0.0 0.0 0.1421044228005748 0.0 30 0.0 0.0 0.0 0.18441641385917293 0.0 31 0.0 0.0 0.0 0.2187450103784129 0.0 32 0.0 0.0 0.0 0.2538719463515887 0.0 33 0.0 0.0 0.0 0.3129490659428389 0.0 34 0.0 0.0 0.0 0.3967747086060993 0.0 35 0.0 0.0 0.0 0.5292990579594443 0.0 36 0.0 0.0 0.0 0.7177071690882963 0.0 37 0.0 0.0 0.0 1.0490180424716589 0.0 38 0.0 0.0 0.0 1.4737346319655118 0.0 39 0.0 0.0 0.0 2.0046303688328275 0.0 40 0.0 0.0 0.0 2.6832189046782693 0.0 41 0.0 0.0 0.0 3.4184895417531536 0.0 42 0.0 0.0 0.0 4.1777103624461125 0.0 43 0.0 0.0 0.0 5.058278780137314 0.0 44 0.0 0.0 0.0 5.8374580871786685 0.0 45 0.0 0.0 0.0 6.600670605141306 0.0 46 0.0 0.0 0.0 7.352706370748843 0.0 47 0.0 0.0 0.0 8.1119271914418 0.0 48 0.0 0.0 0.0 8.946990260258662 0.0 49 0.0 0.0 0.0 9.623982117196231 0.0 50 0.0 0.0 0.0 10.313747405396775 0.0 51 0.0 0.0 0.0 11.055404758103146 0.0 52 0.0 0.0 0.0 11.772313587737505 0.0 53 0.0 0.0 0.0 12.42375858214913 0.0 54 0.0 0.0 0.0 13.068816860929267 0.0 55 0.0 0.0 0.0 13.723455213156635 0.0 56 0.0 0.0 0.0 14.299057959444356 0.0 57 0.0 0.0 0.0 14.943317898770557 0.0 58 0.0 0.0 0.0 15.527702379051572 0.0 59 0.0 0.0 0.0 16.033849592846877 0.0 60 0.0 0.0 0.0 16.563148650806323 0.0 61 0.0 0.0 0.0 17.094044387673637 0.0 62 0.0 0.0 0.0 17.76464952897972 0.0 63 0.0 0.0 0.0 18.315503752195433 0.0 64 0.0 0.0 0.0 18.90148491138432 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGGC 15 0.002220367 69.99919 14 ACGTTAG 15 0.002220367 69.99919 70 TTACTCG 15 0.002220367 69.99919 19 CCCACGT 15 0.002220367 69.99919 59 ATCGTAT 30 1.0169242E-7 69.99919 39 ACGATCT 15 0.002220367 69.99919 34 GAGCGCC 15 0.002220367 69.99919 28 CGAGACA 15 0.002220367 69.99919 23 CACGTAA 15 0.002220367 69.99919 61 TATACCG 15 0.002220367 69.99919 6 CCACGTA 15 0.002220367 69.99919 60 TAAGCGC 15 0.002220367 69.99919 47 AGATATC 30 8.337325E-6 58.33266 35 GCTTATA 25 2.3735341E-4 56.044106 1 AAAGACG 25 2.3829266E-4 55.99936 66 CCGTCTT 3210 0.0 54.62554 47 CGTCTTC 3225 0.0 54.588524 48 GCCGTCT 3215 0.0 54.54059 46 TATGCCG 3235 0.0 54.52797 43 ATGCCGT 3235 0.0 54.52797 44 >>END_MODULE