##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779795_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 248794 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.456827737003305 34.0 27.0 34.0 12.0 34.0 2 30.127824625995803 34.0 31.0 34.0 12.0 34.0 3 29.89369920496475 34.0 31.0 34.0 11.0 34.0 4 29.985598527295675 34.0 31.0 34.0 12.0 34.0 5 30.469086875085413 34.0 32.0 34.0 21.0 34.0 6 33.288511780830724 37.0 34.0 38.0 21.0 38.0 7 33.51949001985579 38.0 34.0 38.0 21.0 38.0 8 32.89244113604026 37.0 34.0 38.0 11.0 38.0 9 33.81596421135558 38.0 34.0 38.0 21.0 38.0 10-11 32.36239017018095 37.0 30.5 38.0 16.5 38.0 12-13 33.24154119472335 37.0 34.0 38.0 16.0 38.0 14-15 31.987809191539988 37.0 29.0 38.0 11.0 38.0 16-17 32.65284733554668 37.0 31.0 38.0 16.0 38.0 18-19 33.57536958286775 38.0 34.0 38.0 21.0 38.0 20-21 32.19184747220592 37.0 30.0 38.0 16.0 38.0 22-23 33.13283077566179 37.5 32.5 38.0 16.0 38.0 24-25 33.44419479569443 38.0 34.0 38.0 21.0 38.0 26-27 32.33118965891461 37.0 31.0 38.0 11.0 38.0 28-29 33.6178263945272 37.5 34.0 38.0 21.0 38.0 30-31 34.04690426618005 38.0 36.0 38.0 21.0 38.0 32-33 34.143888116272905 38.0 36.0 38.0 21.0 38.0 34-35 34.04464536926132 38.0 35.5 38.0 21.0 38.0 36-37 33.53365434857754 38.0 34.0 38.0 16.0 38.0 38-39 33.49104279042099 38.0 34.0 38.0 16.0 38.0 40-41 33.48676415026085 38.0 34.0 38.0 21.0 38.0 42-43 33.87051536612619 38.0 35.0 38.0 21.5 38.0 44-45 33.92493589073692 38.0 34.5 38.0 21.0 38.0 46-47 33.821117068739596 38.0 34.5 38.0 21.0 38.0 48-49 33.55848211773596 38.0 34.0 38.0 16.0 38.0 50-51 32.90940095018368 37.5 32.5 38.0 16.0 38.0 52-53 33.488221178967336 37.5 34.0 38.0 21.0 38.0 54-55 33.652017331607674 38.0 34.5 38.0 21.0 38.0 56-57 33.698740725258645 38.0 34.0 38.0 21.0 38.0 58-59 33.963485855768226 38.0 35.0 38.0 21.0 38.0 60-61 33.82297804609436 38.0 34.5 38.0 21.0 38.0 62-63 33.827941992170224 38.0 35.0 38.0 21.0 38.0 64-65 33.83771513782487 38.0 34.5 38.0 21.0 38.0 66-67 33.68095090717622 38.0 34.0 38.0 21.0 38.0 68-69 33.05690651703819 37.5 33.5 38.0 15.0 38.0 70-71 33.11851772952724 37.0 33.5 38.0 19.0 38.0 72-73 33.37399615746361 37.0 34.0 38.0 20.5 38.0 74-75 33.46209313729431 37.5 34.0 38.0 20.5 38.0 76 32.43259081810655 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 26.0 13 359.0 14 1426.0 15 2959.0 16 4019.0 17 4525.0 18 4531.0 19 3975.0 20 3328.0 21 2513.0 22 2077.0 23 2045.0 24 1988.0 25 2172.0 26 2423.0 27 3028.0 28 3673.0 29 4406.0 30 5351.0 31 6624.0 32 8751.0 33 11546.0 34 15919.0 35 24150.0 36 42398.0 37 84579.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.48213560779932 18.653809824310365 9.784919872503426 32.07913469538689 2 20.377099126184714 19.95064189650876 30.63739479247892 29.034864184827608 3 20.655240882014837 20.397598012813813 30.051769737212314 28.895391367959032 4 15.760428306148864 19.762936405218774 31.971430179184384 32.50520510944798 5 13.76480140196307 32.46460927514329 33.29099576356343 20.47959355933021 6 28.71096105148921 38.1751678122111 16.487399011214276 16.626472125085414 7 27.49307618408306 30.87238070737482 19.274938801104593 22.359604307437525 8 24.244239094172173 35.35646672481501 19.18935322703174 21.209940953981086 9 24.563356955939753 17.21649857500613 19.52583278732017 38.69431168173395 10-11 24.11772981229149 25.35471682945456 24.655733751356564 25.871819606897382 12-13 24.305297365083895 22.517670276755624 25.662245999192102 27.51478635896838 14-15 24.60639969774069 24.320820923418264 22.82399424421105 28.248785134629994 16-17 25.409630152155522 25.894976315509172 23.376401524971712 25.318992007363594 18-19 22.883631379453107 25.808221490672743 25.259961332384727 26.04818579748942 20-21 24.016254411280013 25.100082799424424 25.339437446240666 25.5442253430549 22-23 25.592766619371282 24.875497907882522 24.318001856980356 25.213733615765843 24-25 22.907857292152357 27.43319613486181 24.06848401048282 25.590462562503014 26-27 23.231515292803067 27.40787038246578 25.04245488728604 24.31815943744511 28-29 23.124943472449726 26.878573797344963 26.063170165512666 23.933312564692642 30-31 23.50458612345957 26.09106328930762 25.74700354510157 24.657347042131242 32-33 22.1356265336514 27.3120077493986 25.833271367620135 24.719094349329865 34-35 22.48105794159616 27.693590851538474 25.488674960307094 24.336676246558273 36-37 24.3320930999202 25.71263168685815 25.34598894041452 24.60928627280713 38-39 24.005306106041726 25.275153756481888 26.406520078787636 24.313020058688746 40-41 22.65324168977853 25.886691587282446 26.43152859841634 25.028538124522694 42-43 21.36612658818044 25.320047750923464 27.060464405866774 26.253361255029322 44-45 20.76670766707667 24.19406056805666 28.596982048251856 26.442249716614814 46-47 21.110999457362784 25.048133930904193 28.080471089494946 25.760395522238078 48-49 20.823494182926805 25.375662949393774 28.233253682270636 25.567589185408785 50-51 22.019104580798547 25.679040630897326 26.72551183032978 25.576342957974347 52-53 19.037100165220153 26.54939117780663 27.850047636467423 26.56346102050579 54-55 19.339842588051805 25.740632059620378 27.498050439354593 27.42147491297322 56-57 19.946333276383626 26.18815513100107 26.97647307116368 26.889038521451614 58-59 20.067733247578083 26.069260762953732 26.640069140169636 27.222936849298552 60-61 19.43976521197258 25.445353488652582 27.055299817074395 28.059581482300437 62-63 20.219163544564324 25.470928269363736 26.5936791497162 27.716229036355745 64-65 20.99698067390072 25.033268872798324 25.5380310455874 28.43171940771355 66-67 20.286787628816246 26.774081377095182 24.451519664891833 28.487611329196742 68-69 20.96405639237517 27.400745601254055 23.983239044585346 27.65195896178542 70-71 20.877839967040806 27.93150918938473 24.11628164032276 27.07436920325171 72-73 21.336264937716805 28.3134297761503 23.65073176221848 26.699573523914417 74-75 22.030818827341005 28.650817098881927 23.29179002035964 26.026574053417423 76 21.890877226831307 29.901038652003344 22.72654189980063 25.481542221364716 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.0 10 1.0 11 1.5 12 1.0 13 3.5 14 6.0 15 12.5 16 19.5 17 20.0 18 36.0 19 74.5 20 121.5 21 146.0 22 173.5 23 249.0 24 400.0 25 503.0 26 642.0 27 915.0 28 1193.0 29 1337.0 30 1627.5 31 2243.0 32 2919.5 33 3271.0 34 3789.5 35 4968.5 36 6158.0 37 6687.0 38 7317.5 39 9093.0 40 11050.0 41 12333.0 42 12804.0 43 13195.5 44 14104.0 45 14920.0 46 15219.0 47 15391.0 48 15233.0 49 14397.0 50 13891.0 51 13302.5 52 11770.0 53 10063.0 54 9300.0 55 8726.5 56 7480.5 57 6202.0 58 5596.0 59 5128.5 60 4328.5 61 3721.5 62 3447.0 63 3270.5 64 2855.5 65 2482.5 66 2257.5 67 2167.0 68 2036.5 69 1792.5 70 1576.5 71 1474.0 72 1423.5 73 1299.0 74 1149.5 75 1074.0 76 1014.5 77 876.0 78 741.0 79 685.0 80 657.5 81 541.5 82 389.5 83 326.0 84 296.0 85 238.0 86 165.5 87 121.0 88 104.5 89 87.5 90 70.5 91 44.5 92 35.0 93 29.5 94 22.0 95 17.5 96 15.0 97 13.0 98 9.0 99 12.0 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.001205816860535222 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0016077558140469624 7 0.0060290843026761095 8 0.002009694767558703 9 0.008440718023746553 10-11 0.0016077558140469624 12-13 2.009694767558703E-4 14-15 4.019389535117406E-4 16-17 0.0010048473837793515 18-19 0.0028135726745821842 20-21 0.0 22-23 0.001205816860535222 24-25 0.002411633721070444 26-27 2.009694767558703E-4 28-29 0.008641687500502425 30-31 0.0 32-33 2.009694767558703E-4 34-35 0.003617450581605666 36-37 0.020297917152342904 38-39 0.009646534884281776 40-41 0.0016077558140469624 42-43 0.001205816860535222 44-45 0.00643102325618785 46-47 0.003617450581605666 48-49 2.009694767558703E-4 50-51 0.0022106642443145736 52-53 0.01406786337291092 54-55 0.008038779070234812 56-57 0.014670771803178533 58-59 0.009646534884281776 60-61 0.023714398257192695 62-63 0.012058168605352219 64-65 0.02532215407123966 66-67 0.015474649710202015 68-69 6.02908430267611E-4 70-71 6.02908430267611E-4 72-73 0.004421328488629147 74-75 0.00703393168645546 76 0.004019389535117406 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 248794.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.85723243551085 #Duplication Level Percentage of deduplicated Percentage of total 1 76.8057194446509 46.741835206197564 2 9.877241858675259 12.02203207230315 3 5.555268119129601 10.142347295023601 4 3.079725672614227 7.49694324383576 5 1.6928066618128477 5.150976424316284 6 0.8706454714287005 3.179104429419681 7 0.49800722558645666 2.121513903745522 8 0.326286185666238 1.5885499393269196 9 0.2354909326781779 1.2898193783805998 >10 1.054749196587107 10.1083648969214 >50 0.0033826926420653445 0.11445888968109103 >100 6.765385284130689E-4 0.04405432084847748 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.0193895351174066E-4 0.0 2 0.0 0.0 0.0 4.0193895351174066E-4 0.0 3 0.0 0.0 0.0 4.0193895351174066E-4 0.0 4 0.0 0.0 0.0 8.038779070234813E-4 0.0 5 0.0 0.0 0.0 0.0024116337210704436 0.0 6 0.0 0.0 0.0 0.0024116337210704436 0.0 7 0.0 0.0 0.0 0.0032155116280939253 4.0193895351174066E-4 8 0.0 0.0 0.0 0.004019389535117406 4.0193895351174066E-4 9 0.0 0.0 0.0 0.005225206395652628 4.0193895351174066E-4 10 0.0 0.0 0.0 0.007234901163211332 4.0193895351174066E-4 11 0.0 0.0 0.0 0.007636840116723072 4.0193895351174066E-4 12 0.0 0.0 0.0 0.007636840116723072 4.0193895351174066E-4 13 0.0 0.0 0.0 0.008038779070234812 4.0193895351174066E-4 14 0.0 0.0 0.0 0.008038779070234812 4.0193895351174066E-4 15 0.0 0.0 0.0 0.008038779070234812 4.0193895351174066E-4 16 0.0 0.0 0.0 0.008038779070234812 4.0193895351174066E-4 17 0.0 0.0 0.0 0.008440718023746553 4.0193895351174066E-4 18 0.0 0.0 0.0 0.009646534884281775 4.0193895351174066E-4 19 0.0 0.0 0.0 0.011656229651840478 4.0193895351174066E-4 20 0.0 0.0 0.0 0.014469802326422664 4.0193895351174066E-4 21 0.0 0.0 0.0 0.014871741279934403 4.0193895351174066E-4 22 0.0 0.0 0.0 0.02492021511772792 4.0193895351174066E-4 23 0.0 0.0 0.0 0.026929909885286624 4.0193895351174066E-4 24 0.0 0.0 0.0 0.036174505816056655 4.0193895351174066E-4 25 0.0 0.0 0.0 0.03979195639766232 4.0193895351174066E-4 26 0.0 0.0 0.0 0.04300746802575625 4.0193895351174066E-4 27 0.0 0.0 0.0 0.07677034012074246 4.0193895351174066E-4 28 0.0 0.0 0.0 0.11495454070435782 4.0193895351174066E-4 29 0.0 0.0 0.0 0.16157945931171974 4.0193895351174066E-4 30 0.0 0.0 0.0 0.20981213373312863 4.0193895351174066E-4 31 0.0 0.0 0.0 0.266485526178284 4.0193895351174066E-4 32 0.0 0.0 0.0 0.3215511628093925 4.0193895351174066E-4 33 0.0 0.0 0.0 0.3886749680458532 4.0193895351174066E-4 34 0.0 0.0 0.0 0.48112092735355355 4.0193895351174066E-4 35 0.0 0.0 0.0 0.6173782325940336 4.0193895351174066E-4 36 0.0 0.0 0.0 0.8750211017950593 4.0193895351174066E-4 37 0.0 0.0 0.0 1.3163500727509505 4.0193895351174066E-4 38 0.0 0.0 0.002009694767558703 1.913631357669397 4.0193895351174066E-4 39 0.0 0.0 0.002009694767558703 2.595319822825309 4.0193895351174066E-4 40 0.0 0.0 0.002009694767558703 3.4176869217103305 4.0193895351174066E-4 41 0.0 0.0 0.002009694767558703 4.382340410138508 4.0193895351174066E-4 42 0.0 0.0 0.002009694767558703 5.356640433450967 4.0193895351174066E-4 43 0.0 0.0 0.002009694767558703 6.357468427695202 4.0193895351174066E-4 44 0.0 0.0 0.002009694767558703 7.31086762542505 4.0193895351174066E-4 45 0.0 0.0 0.002009694767558703 8.376809730138186 4.0193895351174066E-4 46 0.0 0.0 0.002009694767558703 9.31734688135566 4.0193895351174066E-4 47 0.0 0.0 0.002009694767558703 10.3354582506009 4.0193895351174066E-4 48 0.0 0.0 0.002009694767558703 11.172295151812342 4.0193895351174066E-4 49 0.0 0.0 0.002009694767558703 12.00752429720974 4.0193895351174066E-4 50 0.0 0.0 0.002009694767558703 12.857223244933559 4.0193895351174066E-4 51 0.0 0.0 0.002009694767558703 13.77404599789384 4.0193895351174066E-4 52 0.0 0.0 0.002009694767558703 14.697299774110308 4.0193895351174066E-4 53 0.0 0.0 0.002009694767558703 15.631405902071593 4.0193895351174066E-4 54 0.0 0.0 0.002009694767558703 16.53134721898438 4.0193895351174066E-4 55 0.0 0.0 0.002009694767558703 17.364968608567732 4.0193895351174066E-4 56 0.0 0.0 0.002009694767558703 18.158396102799905 4.0193895351174066E-4 57 0.0 0.0 0.002009694767558703 18.932932466217032 4.0193895351174066E-4 58 0.0 0.0 0.002009694767558703 19.680136980795357 4.0193895351174066E-4 59 0.0 0.0 0.002009694767558703 20.342532376182707 4.0193895351174066E-4 60 0.0 0.0 0.002009694767558703 21.00412389366303 4.0193895351174066E-4 61 0.0 0.0 0.002009694767558703 21.686214297772455 4.0193895351174066E-4 62 0.0 0.0 0.002009694767558703 22.297965385017324 4.0193895351174066E-4 63 0.0 0.0 0.002009694767558703 22.968399559474907 4.0193895351174066E-4 64 0.0 0.0 0.002009694767558703 23.606276678698038 4.0193895351174066E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCTTA 25 2.3885019E-4 55.994694 49 CATCGTT 20 0.0069427476 52.50558 32 GCTTAAG 20 0.0069482704 52.49502 21 TGCGTGA 30 5.867399E-4 46.671623 32 GACGCTT 30 5.8732176E-4 46.662243 14 CGCTTAT 30 5.8732176E-4 46.662243 50 GACGACA 55 1.3080353E-7 44.541233 23 CAAGTCT 40 4.5815024E-5 43.75465 34 CTTCCGA 75 7.530616E-10 41.99602 18 GTAGATC 85 5.638867E-11 41.17257 38 ACGTGTA 35 0.0012532175 40.004253 34 TAGATCT 125 0.0 39.196285 39 TGGTCGC 55 6.6824177E-6 38.1782 49 CGGTGGT 65 4.853264E-7 37.688736 46 CTCGGTG 75 3.526111E-8 37.329796 44 TCGGTGG 75 3.526111E-8 37.329796 45 CGCATGT 40 0.002412162 35.010757 63 GTCGCTT 40 0.0024169262 34.99668 48 GTTCTAC 40 0.0024169262 34.99668 1 GGTCCAA 40 0.0024169262 34.99668 11 >>END_MODULE