##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779795_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 248794 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.5727710475333 34.0 34.0 34.0 34.0 34.0 2 33.65548204538695 34.0 34.0 34.0 34.0 34.0 3 33.75590649292185 34.0 34.0 34.0 34.0 34.0 4 33.59695973375564 34.0 34.0 34.0 34.0 34.0 5 33.61679542111144 34.0 34.0 34.0 34.0 34.0 6 37.309356334959844 38.0 38.0 38.0 37.0 38.0 7 37.37048723039945 38.0 38.0 38.0 37.0 38.0 8 37.27134496812624 38.0 38.0 38.0 36.0 38.0 9 37.18692974910971 38.0 38.0 38.0 36.0 38.0 10-11 37.14869932554643 38.0 38.0 38.0 36.0 38.0 12-13 37.29602000048233 38.0 38.0 38.0 36.5 38.0 14-15 37.313819867038596 38.0 38.0 38.0 36.5 38.0 16-17 37.24341623994148 38.0 38.0 38.0 36.0 38.0 18-19 37.135240399688094 38.0 38.0 38.0 36.0 38.0 20-21 37.139935046665116 38.0 38.0 38.0 36.0 38.0 22-23 37.12058168605352 38.0 38.0 38.0 36.0 38.0 24-25 37.306779906267835 38.0 38.0 38.0 36.5 38.0 26-27 37.217239965594025 38.0 38.0 38.0 36.0 38.0 28-29 36.77332451747229 38.0 37.0 38.0 34.5 38.0 30-31 37.1078522793958 38.0 38.0 38.0 36.0 38.0 32-33 37.08287378312981 38.0 38.0 38.0 36.0 38.0 34-35 37.16863951703016 38.0 38.0 38.0 36.0 38.0 36-37 37.11817005233245 38.0 38.0 38.0 36.0 38.0 38-39 36.44470324847062 38.0 37.0 38.0 34.0 38.0 40-41 36.876070162463726 38.0 37.5 38.0 35.0 38.0 42-43 37.214151064736285 38.0 38.0 38.0 36.5 38.0 44-45 36.991975288793135 38.0 38.0 38.0 35.5 38.0 46-47 37.127796490269056 38.0 38.0 38.0 36.0 38.0 48-49 36.809384470686595 38.0 37.0 38.0 35.0 38.0 50-51 36.97130959749833 38.0 37.5 38.0 35.5 38.0 52-53 36.89222006961583 38.0 38.0 38.0 35.5 38.0 54-55 36.89495526419447 38.0 37.5 38.0 35.5 38.0 56-57 36.77639533107711 38.0 37.0 38.0 35.0 38.0 58-59 36.86874884442551 38.0 37.5 38.0 35.5 38.0 60-61 36.5599913985064 38.0 37.0 38.0 34.0 38.0 62-63 36.40205149641872 38.0 37.0 38.0 34.0 38.0 64-65 36.737517785798694 38.0 37.0 38.0 34.5 38.0 66-67 36.542619596935616 38.0 37.0 38.0 34.5 38.0 68-69 36.63945071022613 38.0 37.0 38.0 34.0 38.0 70-71 36.056641237328876 38.0 37.0 38.0 32.5 38.0 72-73 34.93093482961808 38.0 37.0 38.0 23.5 38.0 74-75 34.773328536861825 38.0 37.0 38.0 23.5 38.0 76 34.47843999453363 38.0 36.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 6.0 23 15.0 24 53.0 25 108.0 26 208.0 27 421.0 28 643.0 29 1153.0 30 1878.0 31 3045.0 32 4858.0 33 7789.0 34 13212.0 35 25989.0 36 37578.0 37 151837.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.90533258264296 16.705139547977158 10.832864151853936 33.556663717525936 2 19.582465815092004 17.82880616092028 37.887971574877206 24.700756449110507 3 18.373031503975177 19.38069246042911 35.24240938286293 27.003866652732782 4 13.14581541355499 23.16374189088161 34.104922144424705 29.585520551138693 5 13.048948125758661 32.046592763491084 40.242529964548986 14.661929146201274 6 27.896171129528845 41.25541612739857 17.31231460565769 13.53609813741489 7 26.80088748120935 27.759511885334852 19.610199602884315 25.829401030571475 8 24.01062726593085 39.739704333705795 16.982322724824552 19.2673456755388 9 22.751352524578568 16.45980208525929 18.2882223847842 42.50062300537794 10-11 23.439271043513912 27.35998456554419 27.28864040129585 21.912103989646052 12-13 23.288342966470253 20.820437791908162 28.234201789432223 27.657017452189365 14-15 21.467358537585312 21.10621638785501 21.438820871885977 35.987604202673694 16-17 26.328810180309816 28.34111755106634 22.04313608849088 23.28693618013296 18-19 26.45461707275899 24.563494296486247 23.16193316559081 25.81995546516395 20-21 21.444247047758385 23.504787092936326 22.8140550013264 32.23691085797889 22-23 21.557794802125454 28.31197697693674 22.92438724406537 27.20584097687243 24-25 26.31380091361642 28.219814583697595 22.981492534913773 22.48489196777221 26-27 26.128845550937722 29.01778177930336 23.67922859876042 21.174144070998498 28-29 21.24850277739817 28.69140734905183 24.024695129303762 26.035394744246243 30-31 20.827873662548132 24.17059896942852 33.19955465163951 21.801972716383837 32-33 25.74901323986913 23.350643504264575 25.179264773266237 25.721078482600063 34-35 25.97430002331246 23.051801892328594 23.743739800799055 27.23015828355989 36-37 27.364204924556056 27.584065532126978 23.171981639428605 21.879747903888358 38-39 21.014976245407848 24.574748587184576 28.635738803990453 25.774536363417123 40-41 20.6094198413145 22.37071633560295 29.902650385459456 27.117213437623093 42-43 25.55673681185401 22.1707962627641 29.58236449103373 22.690102434348162 44-45 20.406440669791074 26.627852761722547 30.74049213405468 22.2252144344317 46-47 24.72889217585633 21.856033505631164 26.754865471032257 26.660208847480245 48-49 23.84020514964187 22.17014879780059 25.975505840172996 28.014140212384543 50-51 19.770463795789155 22.099391990352242 31.16084618863374 26.969298025224862 52-53 18.2737769772603 22.44580425203435 35.68355794281303 23.596860827892314 54-55 17.676354387622773 22.694399485287462 31.754747519427383 27.874498607662378 56-57 22.58634660897156 22.63782179531777 26.580901499415877 28.19493009629479 58-59 18.195981778487198 22.354523414161477 34.8512566491233 24.598238158228025 60-61 22.83339833305859 26.872695692729547 26.41434711461529 23.87955885959657 62-63 18.235107285439174 33.237981899979495 23.91036027162092 24.61655054296041 64-65 17.953954324168954 34.037780448879005 23.032084035167415 24.976181191784622 66-67 17.951857123328427 33.93441568362564 22.40247991701445 25.71124727603149 68-69 18.370308436272715 34.13802251870194 22.098033934823594 25.39363511020175 70-71 18.587206673031506 33.55107783528466 21.948042811919 25.913672679764836 72-73 19.005091528926034 31.28466129171667 22.342826934248322 27.367420245108974 74-75 19.54568659530251 30.07183313167532 22.805913872597692 27.576566400424486 76 19.997025269132745 30.20879394762866 22.58182519838239 27.21235558485621 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 3.5 14 6.5 15 11.0 16 22.0 17 28.0 18 36.0 19 54.5 20 98.0 21 131.0 22 192.0 23 311.5 24 458.5 25 547.0 26 680.5 27 947.0 28 1240.0 29 1400.0 30 1639.0 31 2166.0 32 2873.0 33 3292.0 34 3695.0 35 4685.0 36 5823.0 37 6374.0 38 7029.0 39 8744.5 40 10287.5 41 14058.5 42 17347.0 43 19187.5 44 20637.5 45 18725.5 46 17204.0 47 16104.0 48 14335.0 49 12924.0 50 12182.0 51 11643.0 52 10016.5 53 8316.0 54 7703.0 55 7251.5 56 6259.0 57 5155.5 58 4593.0 59 4178.5 60 3504.0 61 3096.0 62 2948.0 63 2739.0 64 2344.5 65 2077.5 66 1951.5 67 1907.0 68 1791.0 69 1657.5 70 1539.0 71 1438.0 72 1359.5 73 1223.0 74 1061.5 75 958.0 76 919.0 77 836.0 78 712.5 79 633.0 80 586.0 81 478.0 82 374.0 83 331.0 84 268.0 85 195.5 86 133.5 87 81.0 88 65.0 89 45.5 90 24.5 91 8.0 92 9.0 93 6.0 94 1.5 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05385981977057325 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0010048473837793515 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.009694767558703E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.01266107703561983 52-53 0.026527970931774884 54-55 0.04481619331655908 56-57 0.052453033433282156 58-59 0.03094929942040403 60-61 0.030145421513380545 62-63 0.026126031978263138 64-65 0.016479497093981367 66-67 0.03054736046689229 68-69 0.009244595930770035 70-71 0.01266107703561983 72-73 0.019092100291807683 74-75 0.009244595930770035 76 0.0128620465123757 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 248794.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.53520583293809 #Duplication Level Percentage of deduplicated Percentage of total 1 36.17195310369899 9.598302209860368 2 17.16350086340089 9.108740564483066 3 14.882304825956558 11.847150654758556 4 10.993971341149383 11.669091698352855 5 7.1950074222181835 9.546050145903841 6 4.273077039595262 6.803218727139722 7 2.384198248962404 4.428563389792358 8 1.4768699445605744 3.135123837391577 9 0.9239904268532825 2.2066448547794564 >10 4.448786694537853 20.095339919772982 >50 0.06513375140113302 1.0836274186676529 >100 0.016662122451452634 0.9968086047091167 >500 0.0 0.0 >1k 0.0030294768093550245 1.6989959564941277 >5k 0.0 0.0 >10k+ 0.0015147384046775123 7.782342017894322 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 19362 7.782342017894322 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 2684 1.0788041512255118 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 1543 0.6201918052686158 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT 445 0.1788628343127246 RNA PCR Primer, Index 30 (95% over 22bp) CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT 406 0.1631872151257667 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT 379 0.1523348633809497 No Hit TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 334 0.13424761047292139 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.0193895351174066E-4 0.0 2 0.0 0.0 0.0 4.0193895351174066E-4 0.0 3 0.0 0.0 0.0 4.0193895351174066E-4 0.0 4 0.0 0.0 0.0 0.0012058168605352218 0.0 5 0.0 0.0 0.0 0.0028135726745821842 0.0 6 0.0 0.0 0.0 0.0028135726745821842 0.0 7 0.0 0.0 0.0 0.003617450581605666 0.0 8 0.0 0.0 0.0 0.004421328488629147 0.0 9 0.0 0.0 0.0 0.0056271453491643685 0.0 10 0.0 0.0 0.0 0.008038779070234812 0.0 11 0.0 0.0 0.0 0.008440718023746553 0.0 12 0.0 0.0 0.0 0.008440718023746553 0.0 13 0.0 0.0 0.0 0.008842656977258294 0.0 14 0.0 0.0 0.0 0.008842656977258294 0.0 15 0.0 0.0 0.0 0.008842656977258294 0.0 16 0.0 0.0 0.0 0.008842656977258294 0.0 17 0.0 0.0 0.0 0.009244595930770035 0.0 18 0.0 0.0 0.0 0.010450412791305257 0.0 19 0.0 0.0 0.0 0.012862046512375701 0.0 20 0.0 0.0 0.0 0.015273680233446144 0.0 21 0.0 0.0 0.0 0.016077558140469624 0.0 22 0.0 0.0 0.0 0.01889113081505181 0.0 23 0.0 0.0 0.0 0.021704703489633995 0.0 24 0.0 0.0 0.0 0.028135726745821845 0.0 25 0.0 0.0 0.0 0.03376287209498621 0.0 26 0.0 0.0 0.0 0.036576444769568395 0.0 27 0.0 0.0 0.0 0.07033931686455461 0.0 28 0.0 0.0 0.0 0.11254290698328738 0.0 29 0.0 0.0 0.0 0.1591678255906493 0.0 30 0.0 0.0 0.0 0.2106160116401521 0.0 31 0.0 0.0 0.0 0.2729165494344719 0.0 32 0.0 0.0 0.0 0.33079575874016254 0.0 33 0.0 0.0 0.0 0.40033119769769365 0.0 34 0.0 0.0 0.0 0.49920818026158187 0.0 35 0.0 0.0 0.0 0.646317837246879 0.0 36 0.0 0.0 0.0 0.9316944942402148 0.0 37 0.0 0.0 0.0 1.3991494971743692 0.0 38 0.0 0.0 0.0 2.035820799536966 0.0 39 0.0 0.0 0.0 2.731979067019301 0.0 40 0.0 0.0 0.0 3.600167206604661 0.0 41 0.0 0.0 0.0 4.611847552593712 0.0 42 0.0 0.0 0.0 5.6311647386994865 0.0 43 0.0 0.0 0.0 6.68746030852834 0.0 44 0.0 0.0 0.0 7.690699936493646 0.0 45 0.0 0.0 0.0 8.802061142953608 0.0 46 0.0 0.0 0.0 9.798869747662724 0.0 47 0.0 0.0 0.0 10.847126538421344 0.0 48 0.0 0.0 0.0 11.730990297193662 0.0 49 0.0 0.0 0.0 12.622490896082702 0.0 50 0.0 0.0 0.0 13.511177922297161 0.0 51 0.0 0.0 0.0 14.452117012468147 0.0 52 0.0 0.0 0.0 15.388634774150502 0.0 53 0.0 0.0 0.0 16.329573864321485 0.0 54 0.0 0.0 0.0 17.24921018995635 0.0 55 0.0 0.0 0.0 18.078812190004584 0.0 56 0.0 0.0 0.0 18.885101730749135 0.0 57 0.0 0.0 0.0 19.679333102888332 0.0 58 0.0 0.0 0.0 20.438997725025523 0.0 59 0.0 0.0 0.0 21.12832303029816 0.0 60 0.0 0.0 0.0 21.789914547778483 0.0 61 0.0 0.0 0.0 22.499336800726706 0.0 62 0.0 0.0 0.0 23.126763507158532 0.0 63 0.0 0.0 0.0 23.820108201966285 0.0 64 0.0 0.0 0.0 24.480091963632564 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAGA 15 0.0022249017 69.98371 30 ATCGTAT 35 2.97121E-7 59.986046 39 AACGTAT 20 0.0069520585 52.48779 38 TGCATCG 20 0.0069520585 52.48779 16 AGTCGAG 20 0.0069520585 52.48779 29 CGTCTTC 2840 0.0 51.769333 48 CCGTCTT 2830 0.0 51.704876 47 ATCTCGT 2705 0.0 51.61461 37 TCGTATG 2895 0.0 51.611485 40 TCTCGTA 2700 0.0 51.58059 38 TATGCCG 2855 0.0 51.476643 43 GCCGTCT 2845 0.0 51.43227 46 CGTATGC 2900 0.0 51.281174 41 CTCGTAT 2885 0.0 51.062645 39 TGCCGTC 2875 0.0 50.99683 45 GATCTCG 2720 0.0 50.94403 36 ATGCCGT 2880 0.0 50.908295 44 CGGATCT 2725 0.0 50.722145 34 GTATGCC 2910 0.0 50.62396 42 CTTGAAA 2845 0.0 50.34512 57 >>END_MODULE