##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779794_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 399005 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.112204107717947 34.0 31.0 34.0 12.0 34.0 2 30.88249771306124 34.0 32.0 34.0 21.0 34.0 3 30.48788611671533 34.0 32.0 34.0 21.0 34.0 4 30.66738762672147 34.0 32.0 34.0 21.0 34.0 5 31.358296261951605 34.0 33.0 34.0 23.0 34.0 6 34.06451297602787 38.0 34.0 38.0 22.0 38.0 7 33.854169747246274 38.0 34.0 38.0 21.0 38.0 8 33.46964073131916 38.0 34.0 38.0 21.0 38.0 9 34.34929386849789 38.0 36.0 38.0 23.0 38.0 10-11 32.94261726043533 37.0 32.0 38.0 16.5 38.0 12-13 33.89191238205035 38.0 34.0 38.0 21.0 38.0 14-15 32.67354795052694 37.0 32.5 38.0 16.0 38.0 16-17 33.34193807095149 37.5 32.5 38.0 16.5 38.0 18-19 34.25250184834776 38.0 35.0 38.0 22.5 38.0 20-21 32.918026089898625 37.5 31.0 38.0 16.5 38.0 22-23 33.83494818360672 38.0 35.0 38.0 22.0 38.0 24-25 34.13970125687648 38.0 35.0 38.0 22.5 38.0 26-27 33.04530770291099 38.0 33.5 38.0 16.0 38.0 28-29 34.30900740592223 38.0 35.0 38.0 23.0 38.0 30-31 34.684897432363 38.0 36.5 38.0 24.0 38.0 32-33 34.79600130324181 38.0 37.0 38.0 25.5 38.0 34-35 34.71552737434368 38.0 36.5 38.0 25.0 38.0 36-37 34.23502587686871 38.0 35.5 38.0 22.5 38.0 38-39 34.187064071878794 38.0 35.0 38.0 22.0 38.0 40-41 34.21324795428629 38.0 35.5 38.0 22.5 38.0 42-43 34.57011566271099 38.0 36.5 38.0 24.5 38.0 44-45 34.607139008283106 38.0 36.0 38.0 24.0 38.0 46-47 34.52201852107117 38.0 36.0 38.0 23.5 38.0 48-49 34.274787283367374 38.0 35.5 38.0 22.5 38.0 50-51 33.663739802759366 38.0 35.0 38.0 17.0 38.0 52-53 34.182831042217515 38.0 35.0 38.0 23.0 38.0 54-55 34.337391762008 38.0 35.5 38.0 23.5 38.0 56-57 34.37868949010664 38.0 36.0 38.0 23.5 38.0 58-59 34.633916868209674 38.0 36.0 38.0 24.0 38.0 60-61 34.49522812997331 38.0 36.0 38.0 23.5 38.0 62-63 34.52983546572098 38.0 36.0 38.0 24.0 38.0 64-65 34.524680141852855 38.0 36.0 38.0 23.5 38.0 66-67 34.3556471723412 38.0 36.0 38.0 23.0 38.0 68-69 33.7706545030764 38.0 34.0 38.0 21.5 38.0 70-71 33.86007067580607 38.0 34.0 38.0 21.5 38.0 72-73 34.09709026202679 38.0 35.0 38.0 23.0 38.0 74-75 34.20012781794715 38.0 35.5 38.0 23.0 38.0 76 33.29884838535858 37.0 33.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 34.0 13 475.0 14 1848.0 15 3454.0 16 4690.0 17 5447.0 18 5469.0 19 4970.0 20 4140.0 21 3205.0 22 2760.0 23 2605.0 24 2819.0 25 3083.0 26 3622.0 27 4275.0 28 5369.0 29 6416.0 30 8049.0 31 10163.0 32 13108.0 33 17649.0 34 24590.0 35 37452.0 36 68754.0 37 154558.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.378322021834364 23.725075437840225 11.677577167146195 27.219025373179218 2 18.1737070964023 25.54178519066177 33.3083545318981 22.97615318103783 3 18.423921624649438 24.110094410317718 32.23860472227026 25.227379242762588 4 13.404343303968622 20.46465583138056 33.99982456360196 32.13117630104886 5 13.67526722722773 34.51485570356262 35.419105023746575 16.39077204546309 6 27.25110465597141 39.587160677004356 17.694295388640903 15.46743927838333 7 24.136790182868143 29.811316971446907 22.468268768046197 23.583624077638753 8 21.49296600675203 36.93366517039232 22.046863212453413 19.52650561040224 9 23.2079165235874 17.73096753333016 22.60886347856819 36.45225246451425 10-11 23.302848177407064 26.25829590568232 26.051274211011748 24.387581705898864 12-13 22.725404443553337 24.250823924512225 27.25554817608802 25.768223455846417 14-15 23.082282589353966 26.16032962158179 24.33678443520475 26.420603353859494 16-17 23.444944298943625 27.85541534567236 24.90520168920189 23.794438666182128 18-19 21.503456192323693 27.53224359263548 26.947272390061006 24.017027824979824 20-21 23.357727346775103 26.6881367401411 26.35919349381587 23.594942419267927 22-23 23.696263761051135 26.88776245465197 25.503292627146784 23.912681157150107 24-25 22.0536026456704 28.278672603301075 25.625984513454547 24.041740237573983 26-27 22.382719886115858 28.262389662207205 26.207638056952092 23.147252394724838 28-29 21.807342760753727 28.032247392086784 26.844838562527258 23.315571284632234 30-31 22.40772625769731 27.51019415894116 26.734260143407447 23.347819439954083 32-33 21.544520856933765 28.228288438211145 26.78093452697216 23.44625617788293 34-35 21.48682551736756 28.22996007428739 26.97692429152537 23.306290116819678 36-37 22.727016352923336 27.501413192385932 26.405578067755524 23.365992386935208 38-39 22.352867455383997 26.918989372368156 27.63610387006216 23.092039302185682 40-41 21.706336575597554 27.50256265021892 27.16020761852727 23.630893155656253 42-43 20.80974835871133 27.10184573703542 27.756356195042365 24.33204970921089 44-45 20.492252166448402 26.39652115067703 28.604512729255045 24.506713953619517 46-47 20.766274306351825 27.073738926880125 28.253702109422285 23.906284657345758 48-49 20.557515303788822 26.93178614169084 28.443054868077265 24.06764368644307 50-51 21.938342663012488 26.872859468339865 27.543919668266938 23.644878200380706 52-53 19.487251471369703 27.626783440448378 28.27386025246398 24.612104835717936 54-55 19.924530288143412 26.973967837019508 28.0187884742636 25.082713400573482 56-57 20.198650181417122 27.363592497665707 27.61137256622195 24.826384754695223 58-59 19.93813745616608 27.115495965649743 27.98879054716267 24.957576031021507 60-61 19.52052605256264 26.995165400462025 27.744233765484942 25.740074781490392 62-63 20.013886086467206 27.059696385983074 27.387799042762378 25.53861848478734 64-65 20.45062852601906 26.611299054046096 27.175211420134143 25.762860999800708 66-67 19.945979143687957 27.731124034894215 26.345006517597515 25.977890303820317 68-69 20.258343598489738 28.549874875784298 25.89288063889164 25.298900886834325 70-71 20.318544370022746 28.513605804474913 26.01399740603129 25.153852419471058 72-73 20.630552391264303 28.673491510300554 25.99418271682914 24.701773381606007 74-75 21.333136154741748 28.800648684146214 25.520758268654998 24.34545689245704 76 21.081335779522192 29.430208427321126 25.059149648610983 24.429306144545702 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 0.5 6 1.0 7 2.0 8 2.0 9 2.0 10 5.0 11 8.0 12 8.0 13 15.0 14 41.0 15 104.0 16 217.0 17 286.0 18 363.0 19 602.5 20 915.0 21 1065.0 22 1278.5 23 1799.0 24 2448.5 25 2791.0 26 3275.0 27 4226.5 28 5245.5 29 5797.0 30 6504.0 31 7793.0 32 9091.5 33 9808.0 34 10771.5 35 12601.5 36 14148.5 37 14829.0 38 15849.0 39 17495.5 40 18612.5 41 19121.0 42 19139.0 43 19490.5 44 20072.0 45 19972.5 46 19643.0 47 19435.5 48 18571.5 49 17465.0 50 17015.0 51 16505.5 52 15226.5 53 14060.5 54 13664.0 55 13181.5 56 11646.5 57 9890.0 58 9186.0 59 8483.0 60 7178.0 61 5918.5 62 5261.0 63 4787.0 64 4030.5 65 3370.5 66 2648.5 67 2304.0 68 2118.0 69 1836.0 70 1616.0 71 1492.0 72 1360.5 73 1122.0 74 985.5 75 956.0 76 942.0 77 847.5 78 707.5 79 648.0 80 634.5 81 541.0 82 415.5 83 370.0 84 355.0 85 291.5 86 222.0 87 201.0 88 170.5 89 124.5 90 88.0 91 48.5 92 30.0 93 31.5 94 24.5 95 14.0 96 12.0 97 8.5 98 8.0 99 13.5 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.506234257716069E-4 2 0.0 3 5.012468515432138E-4 4 0.0 5 0.0 6 0.0030074811092592824 7 0.0072680793473766 8 0.0035087279608024963 9 0.010526183882407489 10-11 0.0032581045350308893 12-13 0.0 14-15 5.012468515432138E-4 16-17 0.0 18-19 0.002756857683487676 20-21 0.0 22-23 0.0018796756932870516 24-25 0.003383416247916693 26-27 7.518702773148206E-4 28-29 0.006766832495833386 30-31 5.012468515432138E-4 32-33 2.506234257716069E-4 34-35 0.0035087279608024963 36-37 0.021428302903472387 38-39 0.01127805415972231 40-41 0.0010024937030864275 42-43 0.001127805415972231 44-45 0.005639027079861155 46-47 0.0023809225448302653 48-49 6.265585644290172E-4 50-51 0.0023809225448302653 52-53 0.01428553526898159 54-55 0.009273066753549455 56-57 0.015663964110725428 58-59 0.014034911843209985 60-61 0.02744326512199095 62-63 0.011152742446836506 64-65 0.023934537161188457 66-67 0.021302991190586585 68-69 3.759351386574103E-4 70-71 6.265585644290172E-4 72-73 0.005388403654089548 74-75 0.010902119021064898 76 0.004260598238117317 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 399005.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.13124281220196 #Duplication Level Percentage of deduplicated Percentage of total 1 73.53891954800035 46.42603386131795 2 11.626424747731175 14.679812875736214 3 6.813112249104372 12.903607311149868 4 3.8753783634441126 9.786298098069764 5 2.060671649903705 6.504638114314583 6 1.0094280433837597 3.8235868144983645 7 0.4826442238061799 2.1328950779510283 8 0.26131581949287175 1.3197753960859222 9 0.11497493741140115 0.6532659621933201 >10 0.21713041772210484 1.7700864886829537 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.506234257716069E-4 0.0 2 0.0 0.0 0.0 7.518702773148206E-4 0.0 3 0.0 0.0 0.0 0.0010024937030864275 0.0 4 0.0 0.0 0.0 0.0010024937030864275 0.0 5 0.0 0.0 0.0 0.0032581045350308893 0.0 6 0.0 0.0 0.0 0.0032581045350308893 0.0 7 0.0 0.0 0.0 0.0032581045350308893 0.0 8 0.0 0.0 0.0 0.0032581045350308893 0.0 9 0.0 0.0 0.0 0.009273066753549454 0.0 10 0.0 0.0 0.0 0.01278179471435195 0.0 11 0.0 0.0 0.0 0.013032418140123557 0.0 12 0.0 0.0 0.0 0.013032418140123557 0.0 13 0.0 0.0 0.0 0.013283041565895165 0.0 14 0.0 0.0 0.0 0.014034911843209985 0.0 15 0.0 0.0 0.0 0.015538652397839626 0.0 16 0.0 0.0 0.0 0.016290522675154448 0.0 17 0.0 0.0 0.0 0.017293016378240874 0.0 18 0.0 0.0 0.0 0.018044886655555696 0.0 19 0.0 0.0 0.0 0.0182955100813273 0.0 20 0.0 0.0 0.0 0.019047380358642122 0.0 21 0.0 0.0 0.0 0.020300497487500156 0.0 22 0.0 0.0 0.0 0.0255635894287039 0.0 23 0.0 0.0 0.0 0.026315459706018722 0.0 24 0.0 0.0 0.0 0.033332915627623715 0.0 25 0.0 0.0 0.0 0.034335409330710144 0.0 26 0.0 0.0 0.0 0.036340396736882996 0.0 27 0.0 0.0 0.0 0.04937281487700655 0.0 28 0.0 0.0 0.0 0.06716707810679064 0.0 29 0.0 0.0 0.0 0.08821944587160561 0.0 30 0.0 0.0 0.0 0.11453490557762434 0.0 31 0.0 0.0 0.0 0.14536158694753198 0.0 32 0.0 0.0 0.0 0.1932306612699089 0.0 33 0.0 0.0 0.0 0.2481171915138908 0.0 34 0.0 0.0 0.0 0.3491184320998484 0.0 35 0.0 0.0 0.0 0.48295134146188645 0.0 36 0.0 0.0 0.0 0.6919712785554065 0.0 37 0.0 0.0 0.0 0.9967293642936805 0.0 38 0.0 0.0 0.0 1.3380784701946091 0.0 39 0.0 0.0 0.0 1.7007305672861242 0.0 40 0.0 0.0 0.0 2.156113331913134 0.0 41 0.0 0.0 0.0 2.691444969361286 0.0 42 0.0 0.0 0.0 3.24106214207842 0.0 43 0.0 0.0 0.0 3.80872420145111 0.0 44 0.0 0.0 0.0 4.415984762095713 0.0 45 0.0 0.0 0.0 5.101690455006829 0.0 46 0.0 0.0 0.0 5.7831355496798285 0.0 47 0.0 0.0 0.0 6.404180398741871 0.0 48 0.0 0.0 0.0 6.964574378767184 0.0 49 0.0 0.0 0.0 7.548276337389256 0.0 50 0.0 0.0 0.0 8.132980789714415 0.0 51 0.0 0.0 0.0 8.677334870490345 0.0 52 0.0 0.0 0.0 9.310660267415196 0.0 53 0.0 0.0 0.0 9.91817145148557 0.0 54 0.0 0.0 0.0 10.549241237578476 0.0 55 0.0 0.0 0.0 11.159509279332338 0.0 56 0.0 0.0 0.0 11.796343404217993 0.0 57 0.0 0.0 0.0 12.367263568125713 0.0 58 0.0 0.0 0.0 12.890815904562599 0.0 59 0.0 0.0 0.0 13.368504154083283 0.0 60 0.0 0.0 0.0 13.877770955251187 0.0 61 0.0 0.0 0.0 14.334657460432826 0.0 62 0.0 0.0 0.0 14.831643713737924 0.0 63 0.0 0.0 0.0 15.350434205085149 0.0 64 0.0 0.0 0.0 15.854688537737623 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTCGGT 20 0.0069516306 52.494457 43 GCCGTAT 55 1.3082354E-7 44.551918 54 TCTCGGT 105 0.0 39.995773 43 TGGTCGC 115 0.0 39.570957 49 CGCCGTA 100 7.2759576E-12 38.505585 53 CGGTGGT 110 0.0 38.18257 46 GTAGATC 205 0.0 37.561718 38 GGTCGCC 115 1.8189894E-12 36.52704 50 TCGCCGT 80 6.225673E-8 35.005077 52 ACGTGTA 60 1.2133531E-5 35.005077 34 CTCGGTG 110 2.3646862E-11 34.996304 44 GTTCGAT 40 0.0024187998 34.996304 43 TCGGTGG 120 1.8189894E-12 34.996304 45 GATCTCG 155 0.0 33.86739 41 TAGATCT 235 0.0 32.766605 39 ACGCTTC 55 2.9940318E-4 31.810835 15 TCGATCT 45 0.0043047075 31.111723 39 CGGTCAA 45 0.004307349 31.107824 9 ATCTCGG 135 7.2759576E-12 31.107822 42 TGCCGCT 90 1.7573984E-7 31.103926 13 >>END_MODULE