FastQCFastQC Report
Wed 25 May 2016
SRR1779793_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779793_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131087
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGCGG150.002220496370.015
TGTCGAT150.002220496370.037
GACGATC252.3832014E-455.99999623
CACGGCA200.006938368552.50000419
TCGGAGC200.006938368552.50000448
GTGTCGA200.006938368552.50000436
TCGTCGG200.006938368552.50000466
AAGGGTT200.006938368552.50000440
TGTGTCG200.006938368552.50000435
GTCGGTT200.006938368552.50000412
GTACGAA200.006938368552.50000443
GTATCAT352.0772692E-550.00000457
GGTCGGT305.8602507E-446.66666411
GTGTAGA1700.045.29411736
CTATACA1050.043.3333362
CCGACAA602.576362E-740.83333221
CGTATCA350.001251702440.00000456
CGGCCCG350.001251702440.00000454
GTAGATC1400.040.00000438
TTACGCT350.001251702440.00000413
Produced by FastQC (version 0.11.5)