##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779793_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 131087 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.919175814535386 34.0 23.0 34.0 12.0 34.0 2 29.261856629566623 34.0 27.0 34.0 12.0 34.0 3 29.07092236453653 34.0 27.0 34.0 11.0 34.0 4 29.18663177889493 34.0 24.0 34.0 12.0 34.0 5 29.784906207327957 34.0 31.0 34.0 11.0 34.0 6 32.188172740241214 37.0 31.0 38.0 12.0 38.0 7 32.484067832813324 37.0 31.0 38.0 12.0 38.0 8 31.714449182603918 37.0 27.0 38.0 11.0 38.0 9 32.558514574290356 37.0 31.0 38.0 12.0 38.0 10-11 31.216596611410743 37.0 27.0 38.0 11.0 38.0 12-13 32.02049020879264 37.0 29.5 38.0 11.0 38.0 14-15 30.86616903277976 37.0 25.5 38.0 11.0 38.0 16-17 31.442839488278775 37.0 28.5 38.0 11.0 38.0 18-19 32.20478766010359 37.0 31.0 38.0 11.0 38.0 20-21 31.08853662071754 37.0 27.0 38.0 11.0 38.0 22-23 31.896580133804264 37.0 29.0 38.0 11.0 38.0 24-25 32.189095791344684 37.0 31.0 38.0 11.0 38.0 26-27 31.136409407492735 37.0 26.5 38.0 11.0 38.0 28-29 32.23156758488638 37.5 31.5 38.0 11.0 38.0 30-31 32.58533645594147 38.0 32.5 38.0 11.0 38.0 32-33 32.72367587937782 38.0 34.0 38.0 11.0 38.0 34-35 32.66922730705562 38.0 33.0 38.0 11.0 38.0 36-37 32.2004699169254 37.5 29.0 38.0 11.0 38.0 38-39 32.12777010687559 37.5 29.0 38.0 11.0 38.0 40-41 32.139048875937355 37.0 30.0 38.0 11.0 38.0 42-43 32.485711779200074 37.5 32.5 38.0 11.0 38.0 44-45 32.51798805373531 38.0 32.0 38.0 11.0 38.0 46-47 32.43841876006012 38.0 31.5 38.0 11.0 38.0 48-49 32.18346594246569 37.5 30.0 38.0 11.0 38.0 50-51 31.583307269218153 37.0 28.5 38.0 11.0 38.0 52-53 32.12254456963696 37.0 31.0 38.0 11.0 38.0 54-55 32.246553815405036 37.0 31.5 38.0 11.0 38.0 56-57 32.273299411840995 37.5 31.0 38.0 11.0 38.0 58-59 32.47381891415625 38.0 32.0 38.0 11.0 38.0 60-61 32.39305575686376 38.0 31.0 38.0 11.0 38.0 62-63 32.3564655534111 38.0 31.0 38.0 11.0 38.0 64-65 32.37422856576167 38.0 31.5 38.0 11.0 38.0 66-67 32.30994682920503 38.0 31.0 38.0 11.0 38.0 68-69 31.7265556462502 37.0 28.0 38.0 11.0 38.0 70-71 31.834945494213766 37.0 29.0 38.0 11.0 38.0 72-73 32.0200286832409 37.0 31.0 38.0 11.0 38.0 74-75 32.07379068862664 37.0 31.0 38.0 11.0 38.0 76 31.163135932624897 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 17.0 13 281.0 14 1210.0 15 2429.0 16 3417.0 17 4074.0 18 4008.0 19 3451.0 20 2735.0 21 2030.0 22 1561.0 23 1329.0 24 1177.0 25 1301.0 26 1301.0 27 1477.0 28 1765.0 29 2096.0 30 2573.0 31 3214.0 32 3988.0 33 5327.0 34 7491.0 35 11273.0 36 20127.0 37 41435.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.723097813649055 18.59313732969196 9.388493050363882 29.295271806295105 2 19.847887280966077 20.431469176958814 30.011366497059207 29.709277045015902 3 17.47923135017202 20.642016370807173 33.56091755856798 28.31783472045283 4 13.04782320138534 24.718698269088467 29.976275298084477 32.257203231441714 5 13.334655610396148 32.784334068214235 35.847948309138204 18.033062012251406 6 26.034451191602333 37.25778889872143 16.365841750328034 20.341918159348204 7 25.63816963945132 31.64070248249134 18.842216085079112 23.878911792978226 8 22.680876384608343 35.498611577309205 16.748039425101464 25.072472612980988 9 23.724365234375 17.870330810546875 18.41278076171875 39.992523193359375 10-11 22.34156984506 26.309284956859397 24.155687617768894 27.19345758031171 12-13 22.484685743056136 22.9008215917673 25.536094349554112 29.07839831562245 14-15 24.73023537892918 25.00715176620018 21.696360799929817 28.566252054940822 16-17 25.75617719529778 25.60475104320032 22.625813391106668 26.01325837039523 18-19 22.130000114430004 25.575106133829706 24.775621831719235 27.519271920021055 20-21 23.998565837954946 25.16000823880324 24.28616109911738 26.555264824124436 22-23 25.88940721443039 24.96328704003906 22.828023145375692 26.319282600154864 24-25 22.177720815977786 28.072122793365985 23.150012968981247 26.600143421674982 26-27 23.05937727666294 28.59317010653352 23.925987237337463 24.421465379466074 28-29 22.5937129277494 27.277547423871955 25.67697982506666 24.451759823311985 30-31 23.256692120500126 26.495380930221913 25.300373034702144 24.947553914575813 32-33 21.452628607827656 28.070014837530945 25.363786507382528 25.11357004725887 34-35 21.374325329468082 29.157973032250684 24.680640054927242 24.787061583353996 36-37 23.872853098938663 26.077170172667692 24.572908798193208 25.47706793020044 38-39 24.052260156399008 25.35037192447072 26.235361434293342 24.362006484836925 40-41 21.95216844032498 26.727695769920278 25.822557882290116 25.497577907464624 42-43 20.339551968386804 26.11712292452578 26.594677479030704 26.94864762805671 44-45 19.862146306482252 24.740427674491343 28.64106926251707 26.756356756509337 46-47 20.454822861676483 26.114933935491745 27.305391962405785 26.12485124042599 48-49 20.671925300947468 26.45438872190776 26.79004622919305 26.083639747951725 50-51 22.860325137508298 26.09033970842901 25.361030797281114 25.688304356781583 52-53 18.936847927673618 27.65339792862729 26.397985847527135 27.01176829617197 54-55 19.280798925814032 25.975388324330922 26.47509841618603 28.268714333669013 56-57 20.292287679437244 26.75183776546031 25.619614021568708 27.336260533533736 58-59 19.839480600727065 26.346467085512437 25.71438380463019 28.099668509130304 60-61 18.87306425952562 25.501604294396607 26.61793376038213 29.007397685695647 62-63 20.222927506599326 25.736988266170258 25.71371896791126 28.326365259319164 64-65 20.724793602832335 25.353278701033133 24.86990492758931 29.05202276854523 66-67 19.412123755388546 28.170373478808227 23.61538168084538 28.802121084957843 68-69 20.232441937194142 29.205524596354316 22.750626494719135 27.811406971732406 70-71 19.654960655750212 29.912691238228195 23.52835722976813 26.903990876253463 72-73 20.4124214694136 29.966928467075327 23.07912373788426 26.541526325626812 74-75 21.628539494714836 30.080984478292876 22.334245028590612 25.956230998401676 76 20.55736104118033 31.803756427274532 21.698631391037672 25.94025114050747 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 1.5 11 1.5 12 1.0 13 2.0 14 4.5 15 4.0 16 13.0 17 24.0 18 26.5 19 50.5 20 70.5 21 69.0 22 79.0 23 128.5 24 228.5 25 289.0 26 320.0 27 437.0 28 614.5 29 706.0 30 856.5 31 1129.0 32 1554.0 33 1857.0 34 2068.5 35 2560.0 36 3150.0 37 3460.0 38 3877.0 39 4667.0 40 5428.0 41 6147.5 42 6479.0 43 6814.0 44 7491.5 45 7872.0 46 7910.0 47 8020.5 48 7940.5 49 7525.0 50 7300.0 51 6994.0 52 6259.0 53 5580.5 54 5331.0 55 4984.0 56 4309.5 57 3684.0 58 3386.0 59 3120.0 60 2585.0 61 2149.0 62 1982.0 63 1830.0 64 1513.0 65 1234.0 66 1091.0 67 1062.0 68 1031.5 69 911.0 70 762.0 71 703.0 72 646.5 73 541.0 74 466.5 75 441.0 76 422.0 77 388.0 78 331.5 79 290.0 80 262.0 81 218.5 82 167.5 83 132.0 84 122.5 85 106.0 86 80.5 87 62.0 88 58.0 89 48.0 90 32.5 91 22.5 92 22.0 93 19.5 94 11.5 95 5.0 96 4.0 97 6.5 98 6.0 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.628521516244937E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.002288556454873481 7 0.006865669364620443 8 0.002288556454873481 9 0.011442782274367404 10-11 0.003051408606497975 12-13 0.0 14-15 3.8142607581224686E-4 16-17 0.0 18-19 0.001907130379061234 20-21 0.0 22-23 0.001907130379061234 24-25 0.003814260758122468 26-27 0.0011442782274367405 28-29 0.006484243288808196 30-31 0.0 32-33 3.8142607581224686E-4 34-35 0.0034328346823102214 36-37 0.019834155942236836 38-39 0.009154225819493924 40-41 0.0015257043032489875 42-43 0.001907130379061234 44-45 0.004577112909746962 46-47 0.002288556454873481 48-49 7.628521516244937E-4 50-51 0.003051408606497975 52-53 0.011061356198555158 54-55 0.00839137366786943 56-57 0.01334991265342864 58-59 0.00953565189530617 60-61 0.024792694927796042 62-63 0.009917077971118418 64-65 0.022122712397110316 66-67 0.01678274733573886 68-69 3.8142607581224686E-4 70-71 3.8142607581224686E-4 72-73 0.005721391137183702 74-75 0.00953565189530617 76 0.003814260758122468 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 131087.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 68.91148626484701 #Duplication Level Percentage of deduplicated Percentage of total 1 80.54885203799233 55.507411108653024 2 8.927978391303386 12.304805205703083 3 4.854207718024221 10.035320054620215 4 2.5859587752119912 7.128090504779269 5 1.2907653818053004 4.447428043970798 6 0.6608807315075165 2.732536407118936 7 0.3265658556025417 1.5752896931045794 8 0.21475856266743418 1.1839465393212143 9 0.14391037704518786 0.8925370174006575 >10 0.4450151659397348 4.140761479017751 >50 0.001107002900347599 0.05187394631046557 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004577112909746962 0.0 2 0.0 0.0 0.0 0.004577112909746962 0.0 3 0.0 0.0 0.0 0.004577112909746962 0.0 4 0.0 0.0 0.0 0.006102817212995949 0.0 5 0.0 0.0 0.0 0.006102817212995949 0.0 6 0.0 0.0 0.0 0.006102817212995949 0.0 7 0.0 0.0 0.0 0.006102817212995949 0.0 8 0.0 0.0 0.0 0.006102817212995949 0.0 9 0.0 0.0 0.0 0.009154225819493924 0.0 10 0.0 0.0 0.0 0.012968486577616392 0.0 11 0.0 0.0 0.0 0.016019895184114365 0.0 12 0.0 0.0 0.0 0.01907130379061234 0.0 13 0.0 0.0 0.0 0.019834155942236836 0.0 14 0.0 0.0 0.0 0.019834155942236836 0.0 15 0.0 0.0 0.0 0.024411268851983796 0.0 16 0.0 0.0 0.0 0.024411268851983796 0.0 17 0.0 0.0 0.0 0.024411268851983796 0.0 18 0.0 0.0 0.0 0.02669982530685728 0.0 19 0.0 0.0 0.0 0.030514086064979747 0.0 20 0.0 0.0 0.0 0.03203979036822873 0.0 21 0.0 0.0 0.0 0.03203979036822873 0.0 22 0.0 0.0 0.0 0.0366169032779757 0.0 23 0.0 0.0 0.0 0.0366169032779757 0.0 24 0.0 0.0 0.0 0.0366169032779757 0.0 25 0.0 0.0 0.0 0.038905459732849174 0.0 26 0.0 0.0 0.0 0.04119401618772266 0.0 27 0.0 0.0 0.0 0.07399665870757588 0.0 28 0.0 0.0 0.0 0.0968822232563107 0.0 29 0.0 0.0 0.0 0.12129349210829449 0.0 30 0.0 0.0 0.0 0.13807623944403336 0.0 31 0.0 0.0 0.0 0.17316743841876006 0.0 32 0.0 0.0 0.0 0.23343275839709507 0.0 33 0.0 0.0 0.0 0.2929352262238056 0.0 34 0.0 0.0 0.0 0.36769473708300593 0.0 35 0.0 0.0 0.0 0.44931991730682674 0.0 36 0.0 0.0 0.0 0.6545271460938156 0.0 37 0.0 0.0 0.0 0.9955220578699642 0.0 38 0.0 0.0 0.0 1.3548254212851008 0.0 39 0.0 0.0 0.0 1.7728684003753232 0.0 40 0.0 0.0 0.0 2.3297504710612036 0.0 41 0.0 0.0 0.0 2.9293522622380554 0.0 42 0.0 0.0 0.0 3.654824658432949 0.0 43 0.0 0.0 0.0 4.486333503703647 0.0 44 0.0 0.0 0.0 5.275885480634998 0.0 45 0.0 0.0 0.0 5.97389519937141 0.0 46 0.0 0.0 0.0 6.745901576815397 0.0 47 0.0 0.0 0.0 7.487393868194405 0.0 48 0.0 0.0 0.0 8.142683866439846 0.0 49 0.0 0.0 0.0 8.730080023190705 0.0 50 0.0 0.0 0.0 9.395287099407264 0.0 51 0.0 0.0 0.0 10.09558537459855 0.0 52 0.0 0.0 0.0 10.89200302089452 0.0 53 0.0 0.0 0.0 11.703677710222982 0.0 54 0.0 0.0 0.0 12.447458558056862 0.0 55 0.0 0.0 0.0 13.183610884374499 0.0 56 0.0 0.0 0.0 13.933494549421377 0.0 57 0.0 0.0 0.0 14.563610426663208 0.0 58 0.0 0.0 0.0 15.138038096836452 0.0 59 0.0 0.0 0.0 15.580492344778659 0.0 60 0.0 0.0 0.0 16.135085859009667 0.0 61 0.0 0.0 0.0 16.595085706439235 0.0 62 0.0 0.0 0.0 17.16112200294461 0.0 63 0.0 0.0 0.0 17.832431896374164 0.0 64 0.0 0.0 0.0 18.433559391854264 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGCGG 15 0.0022204963 70.0 15 TGTCGAT 15 0.0022204963 70.0 37 GACGATC 25 2.3832014E-4 55.999996 23 CACGGCA 20 0.0069383685 52.500004 19 TCGGAGC 20 0.0069383685 52.500004 48 GTGTCGA 20 0.0069383685 52.500004 36 TCGTCGG 20 0.0069383685 52.500004 66 AAGGGTT 20 0.0069383685 52.500004 40 TGTGTCG 20 0.0069383685 52.500004 35 GTCGGTT 20 0.0069383685 52.500004 12 GTACGAA 20 0.0069383685 52.500004 43 GTATCAT 35 2.0772692E-5 50.000004 57 GGTCGGT 30 5.8602507E-4 46.666664 11 GTGTAGA 170 0.0 45.294117 36 CTATACA 105 0.0 43.333336 2 CCGACAA 60 2.576362E-7 40.833332 21 CGTATCA 35 0.0012517024 40.000004 56 CGGCCCG 35 0.0012517024 40.000004 54 GTAGATC 140 0.0 40.000004 38 TTACGCT 35 0.0012517024 40.000004 13 >>END_MODULE