SRR1779793_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779793_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	131087
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	17729	13.524605796150649	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	2394	1.8262680509890379	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1270	0.9688222325631068	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	427	0.3257378687436588	RNA PCR Primer, Index 24 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	318	0.24258698421658897	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	269	0.2052072287869888	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT	222	0.1693531776606376	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	148	0.11290211844042505	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACCGC	15	0.0022231867	69.97863	6
CACGATA	15	0.0022231867	69.97863	21
CGACAAT	15	0.0022231867	69.97863	32
AGACGGT	15	0.0022231867	69.97863	10
TTCGACA	15	0.0022231867	69.97863	28
ACGGTTT	15	0.0022231867	69.97863	12
CGGCATT	25	2.3822991E-4	56.004272	45
CTTCGCT	20	0.006925801	52.524055	65
GATCATC	20	0.006925801	52.524055	55
ACGGCCG	20	0.006925801	52.524055	51
GCTAGAC	20	0.006925801	52.524055	52
TCCGGAG	20	0.006946751	52.48398	34
ACGCCGA	20	0.006946751	52.48398	41
CGAGTCC	20	0.006946751	52.48398	25
CCTAGAG	20	0.006946751	52.48398	3
ATCGTAC	20	0.006946751	52.48398	10
AAGTTAG	20	0.006946751	52.48398	30
CGAATTC	20	0.006946751	52.48398	14
GACGGTT	20	0.006946751	52.48398	11
TCGTACT	20	0.006946751	52.48398	11