##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779793_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 131087 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.59932716440227 34.0 34.0 34.0 34.0 34.0 2 33.67816030575114 34.0 34.0 34.0 34.0 34.0 3 33.77126641085691 34.0 34.0 34.0 34.0 34.0 4 33.60681837253122 34.0 34.0 34.0 34.0 34.0 5 33.64308436381945 34.0 34.0 34.0 34.0 34.0 6 37.342505359036366 38.0 38.0 38.0 37.0 38.0 7 37.39336471198517 38.0 38.0 38.0 37.0 38.0 8 37.303699070083226 38.0 38.0 38.0 37.0 38.0 9 37.22289777018316 38.0 38.0 38.0 36.0 38.0 10-11 37.17275931251764 38.0 38.0 38.0 36.5 38.0 12-13 37.32781282659607 38.0 38.0 38.0 36.5 38.0 14-15 37.35289921960225 38.0 38.0 38.0 37.0 38.0 16-17 37.26236774050821 38.0 38.0 38.0 36.0 38.0 18-19 37.144800781160605 38.0 38.0 38.0 36.0 38.0 20-21 37.156300777346345 38.0 38.0 38.0 36.0 38.0 22-23 37.16461586579905 38.0 38.0 38.0 36.0 38.0 24-25 37.30133422841319 38.0 38.0 38.0 36.0 38.0 26-27 37.21836642840251 38.0 38.0 38.0 36.0 38.0 28-29 36.77099178408233 38.0 37.0 38.0 34.0 38.0 30-31 37.00498142455011 38.0 38.0 38.0 35.5 38.0 32-33 37.1151449037662 38.0 38.0 38.0 36.0 38.0 34-35 37.16402465538154 38.0 38.0 38.0 36.0 38.0 36-37 37.114668121171434 38.0 38.0 38.0 36.0 38.0 38-39 36.310934722741386 38.0 37.0 38.0 34.0 38.0 40-41 36.808402053597995 38.0 37.0 38.0 35.0 38.0 42-43 37.20151502437312 38.0 38.0 38.0 36.5 38.0 44-45 36.994537978594366 38.0 38.0 38.0 35.5 38.0 46-47 37.12024838466057 38.0 38.0 38.0 36.0 38.0 48-49 36.80022809279333 38.0 37.0 38.0 34.5 38.0 50-51 36.91541495342788 38.0 37.5 38.0 35.5 38.0 52-53 36.848489934165855 38.0 37.5 38.0 35.0 38.0 54-55 36.83860337028081 38.0 37.5 38.0 35.5 38.0 56-57 36.732292294430415 38.0 37.0 38.0 34.5 38.0 58-59 36.799682653504924 38.0 37.0 38.0 35.0 38.0 60-61 36.475973971484585 38.0 37.0 38.0 34.0 38.0 62-63 36.3464454903995 38.0 37.0 38.0 34.0 38.0 64-65 36.714060128006594 38.0 37.0 38.0 34.5 38.0 66-67 36.476969493542455 38.0 37.0 38.0 34.0 38.0 68-69 36.542677763622635 38.0 37.0 38.0 34.0 38.0 70-71 35.5013845766552 38.0 36.5 38.0 28.5 38.0 72-73 33.59859482633671 38.0 34.5 38.0 20.0 38.0 74-75 33.30225727951665 38.0 34.0 38.0 19.0 38.0 76 33.073851716798764 38.0 34.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 3.0 22 4.0 23 19.0 24 28.0 25 50.0 26 111.0 27 222.0 28 393.0 29 670.0 30 1155.0 31 1786.0 32 2780.0 33 4422.0 34 7730.0 35 16154.0 36 21895.0 37 73663.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.95168602787403 15.935978262528813 11.302263811079394 37.81007189851776 2 17.502879766872383 15.81163654672088 42.99739867416296 23.688085012243775 3 16.542448907977146 18.076544584894002 40.324364734870734 25.05664177225812 4 11.823445498028027 27.844866386445645 33.24509676779543 27.0865913477309 5 12.095020864006347 30.433986589059174 44.20270507372966 13.268287473204818 6 25.52350728905231 45.124230472892044 16.77435596207099 12.577906275984652 7 24.281583986207632 26.35425328217138 18.821088284879508 30.543074446741475 8 21.85876555264824 43.87620435283438 15.805533729507884 18.4594963650095 9 20.69770457787576 15.96573268134903 16.758336066886876 46.57822667388834 10-11 21.34460320245333 28.942229206557478 28.962444788575525 20.750722802413666 12-13 21.10850046152555 19.355466217092467 30.297054627842577 29.2389786935394 14-15 19.1510218404571 19.646112886861395 20.60044092854364 40.60242434413786 16-17 27.743407050279583 29.26033855378489 20.355565387872176 22.640689008063347 18-19 28.430736838893257 23.402015455384593 21.213774058449733 26.953473647272425 20-21 19.723923806327097 21.510904971507472 21.18745565921869 37.57771556294674 22-23 19.515283742857797 30.1326599891675 21.023061020543608 29.328995247431095 24-25 27.90490103711728 29.833809489298886 20.892630326239946 21.368659147343887 26-27 28.00048822537704 30.86652375903026 21.35413885434864 19.778849161244057 28-29 27.13198105075255 22.99274527603805 22.010573130821516 27.864700542387883 30-31 28.426922578135134 21.571170291485807 30.12579431980288 19.87611281057618 32-33 20.892231876540006 30.254334907351605 29.70698848856103 19.146444727547355 34-35 26.578913240824797 30.3725769908534 23.878416624074088 19.170093144247712 36-37 20.875449129204267 29.408713297275856 21.660423993225873 28.055413580294005 38-39 18.691021993027533 23.362347143500116 30.02700496616751 27.919625897304844 40-41 18.78752279020803 20.86171779047503 31.581697651178224 28.769061768138716 42-43 27.2705427332334 20.341148783436893 30.667536321436607 21.720772161893102 44-45 19.081983720735085 28.71489926537338 32.10959134010237 20.093525673789163 46-47 26.81425312960095 20.793061096828826 25.145514047922372 27.24717172564785 48-49 25.817968219579363 20.07254723961949 23.670920838832227 30.438563701968924 50-51 18.987708764086094 20.35225720803546 32.17313018333854 28.486903844539903 52-53 17.285071671391343 20.361771696954204 40.36986024364839 21.98329638800606 54-55 16.41544426297071 20.7512249477203 33.5891349808435 29.244195808465495 56-57 24.867393743274288 20.635059949476062 25.3730147221565 29.12453158509315 58-59 17.200288464840487 21.018250361534967 39.07935454084105 22.702106632783494 60-61 24.997710622710624 28.589743589743588 25.17399267399267 21.238553113553113 62-63 16.973681198348682 38.95014765694751 22.09703388860485 21.97913725609896 64-65 16.803747730151223 40.191964353837 21.20916179634688 21.7951261196649 66-67 16.7418328334974 40.18757201834512 20.621093839426752 22.44950130873072 68-69 16.92263090033798 40.078429577411065 20.599208074889567 22.399731447361393 70-71 16.890077360880113 38.61025069807894 20.85539466255703 23.644277278483912 72-73 18.260375256567755 34.81195205139748 21.090441563594467 25.837231128440298 74-75 19.009071557729136 33.6799700920889 21.261701851696436 26.04925649848553 76 19.669629573112577 33.87708388967307 20.973562736047 25.47972380116736 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.0 14 5.0 15 8.0 16 15.0 17 23.0 18 30.5 19 58.5 20 91.5 21 104.0 22 98.5 23 123.0 24 236.0 25 319.0 26 403.5 27 505.0 28 620.5 29 719.0 30 879.5 31 1093.0 32 1490.5 33 1835.0 34 1995.5 35 2338.0 36 2857.0 37 3194.0 38 3507.5 39 4338.0 40 7779.5 41 12132.5 42 13561.0 43 12716.5 44 10646.0 45 8523.5 46 7627.0 47 7208.0 48 6430.5 49 5831.0 50 5590.0 51 5267.0 52 4621.5 53 4047.5 54 3796.0 55 3615.0 56 3295.5 57 2839.5 58 2522.0 59 2201.5 60 1774.5 61 1528.5 62 1389.0 63 1329.0 64 1144.0 65 1019.0 66 958.0 67 897.0 68 829.0 69 692.5 70 583.0 71 542.0 72 565.0 73 531.5 74 437.0 75 399.0 76 369.5 77 317.5 78 275.0 79 255.0 80 218.5 81 180.0 82 157.5 83 137.0 84 102.0 85 70.0 86 61.0 87 49.0 88 38.5 89 23.5 90 14.5 91 7.0 92 4.0 93 4.5 94 4.0 95 1.5 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05263679846209006 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.001907130379061234 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.8142607581224686E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.013731338729240886 52-53 0.028606955685918513 54-55 0.04653398124909411 56-57 0.045771129097469616 58-59 0.03699832935378795 60-61 0.0358540511263512 62-63 0.030514086064979743 64-65 0.01601989518411437 66-67 0.03356549467147772 68-69 0.010679930122742912 70-71 0.009917077971118418 72-73 0.022885564548734808 74-75 0.013731338729240886 76 0.01678274733573886 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 131087.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.301913996048423 #Duplication Level Percentage of deduplicated Percentage of total 1 39.9026320585249 11.692234927948613 2 19.736533805420322 11.566364322930573 3 14.844705943609904 13.049348905688587 4 9.911223347478588 11.616712564937789 5 5.987868058629039 8.772799743681677 6 3.3453958501470935 5.881590089024846 7 1.8458254145947774 3.786035228512362 8 1.2001770326208638 2.8133987351911327 9 0.7159407461404285 1.888059075270622 >10 2.4654395876181305 11.034656373248302 >50 0.02082736716044883 0.43330002212271246 >100 0.015620525370336622 1.1458039317399895 >500 0.0 0.0 >1k 0.005206841790112208 2.7950902835521445 >5k 0.0 0.0 >10k+ 0.002603420895056104 13.524605796150649 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 17729 13.524605796150649 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 2394 1.8262680509890379 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1270 0.9688222325631068 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 427 0.3257378687436588 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 318 0.24258698421658897 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 269 0.2052072287869888 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT 222 0.1693531776606376 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 148 0.11290211844042505 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00839137366786943 0.0 2 0.0 0.0 0.0 0.00839137366786943 0.0 3 0.0 0.0 0.0 0.00839137366786943 0.0 4 0.0 0.0 0.0 0.009917077971118418 0.0 5 0.0 0.0 0.0 0.010679930122742912 0.0 6 0.0 0.0 0.0 0.010679930122742912 0.0 7 0.0 0.0 0.0 0.010679930122742912 0.0 8 0.0 0.0 0.0 0.010679930122742912 0.0 9 0.0 0.0 0.0 0.015257043032489873 0.0 10 0.0 0.0 0.0 0.021359860245485824 0.0 11 0.0 0.0 0.0 0.024411268851983796 0.0 12 0.0 0.0 0.0 0.028225529610106267 0.0 13 0.0 0.0 0.0 0.02975123391335525 0.0 14 0.0 0.0 0.0 0.02975123391335525 0.0 15 0.0 0.0 0.0 0.035091198974726706 0.0 16 0.0 0.0 0.0 0.035091198974726706 0.0 17 0.0 0.0 0.0 0.035091198974726706 0.0 18 0.0 0.0 0.0 0.038905459732849174 0.0 19 0.0 0.0 0.0 0.04271972049097165 0.0 20 0.0 0.0 0.0 0.045008276945845124 0.0 21 0.0 0.0 0.0 0.045008276945845124 0.0 22 0.0 0.0 0.0 0.045008276945845124 0.0 23 0.0 0.0 0.0 0.04729683340071861 0.0 24 0.0 0.0 0.0 0.04729683340071861 0.0 25 0.0 0.0 0.0 0.04882253770396759 0.0 26 0.0 0.0 0.0 0.051111094158841075 0.0 27 0.0 0.0 0.0 0.08772799743681677 0.0 28 0.0 0.0 0.0 0.1090878576823026 0.0 29 0.0 0.0 0.0 0.1327362743826619 0.0 30 0.0 0.0 0.0 0.14875616956677626 0.0 31 0.0 0.0 0.0 0.18766162929962543 0.0 32 0.0 0.0 0.0 0.2517412100360829 0.0 33 0.0 0.0 0.0 0.3142950864692914 0.0 34 0.0 0.0 0.0 0.3966831188447367 0.0 35 0.0 0.0 0.0 0.48517396843317795 0.0 36 0.0 0.0 0.0 0.7025868316461586 0.0 37 0.0 0.0 0.0 1.0496845606353034 0.0 38 0.0 0.0 0.0 1.4173792977183093 0.0 39 0.0 0.0 0.0 1.8407622418699032 0.0 40 0.0 0.0 0.0 2.4159527641947713 0.0 41 0.0 0.0 0.0 3.0361515634654848 0.0 42 0.0 0.0 0.0 3.793663750028607 0.0 43 0.0 0.0 0.0 4.6724694287000235 0.0 44 0.0 0.0 0.0 5.485669822331734 0.0 45 0.0 0.0 0.0 6.211142218526628 0.0 46 0.0 0.0 0.0 7.03502254228108 0.0 47 0.0 0.0 0.0 7.809317476179942 0.0 48 0.0 0.0 0.0 8.486730186822491 0.0 49 0.0 0.0 0.0 9.113794655457825 0.0 50 0.0 0.0 0.0 9.797310183313373 0.0 51 0.0 0.0 0.0 10.518968318750144 0.0 52 0.0 0.0 0.0 11.317674521500988 0.0 53 0.0 0.0 0.0 12.123246393616453 0.0 54 0.0 0.0 0.0 12.875418615118203 0.0 55 0.0 0.0 0.0 13.632930801681326 0.0 56 0.0 0.0 0.0 14.389680136092824 0.0 57 0.0 0.0 0.0 15.030475943457398 0.0 58 0.0 0.0 0.0 15.602615057175768 0.0 59 0.0 0.0 0.0 16.05422353093747 0.0 60 0.0 0.0 0.0 16.618734123139593 0.0 61 0.0 0.0 0.0 17.09704242220815 0.0 62 0.0 0.0 0.0 17.664604423016776 0.0 63 0.0 0.0 0.0 18.353459915933694 0.0 64 0.0 0.0 0.0 18.976710123810903 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACCGC 15 0.0022231867 69.97863 6 CACGATA 15 0.0022231867 69.97863 21 CGACAAT 15 0.0022231867 69.97863 32 AGACGGT 15 0.0022231867 69.97863 10 TTCGACA 15 0.0022231867 69.97863 28 ACGGTTT 15 0.0022231867 69.97863 12 CGGCATT 25 2.3822991E-4 56.004272 45 CTTCGCT 20 0.006925801 52.524055 65 GATCATC 20 0.006925801 52.524055 55 ACGGCCG 20 0.006925801 52.524055 51 GCTAGAC 20 0.006925801 52.524055 52 TCCGGAG 20 0.006946751 52.48398 34 ACGCCGA 20 0.006946751 52.48398 41 CGAGTCC 20 0.006946751 52.48398 25 CCTAGAG 20 0.006946751 52.48398 3 ATCGTAC 20 0.006946751 52.48398 10 AAGTTAG 20 0.006946751 52.48398 30 CGAATTC 20 0.006946751 52.48398 14 GACGGTT 20 0.006946751 52.48398 11 TCGTACT 20 0.006946751 52.48398 11 >>END_MODULE