FastQCFastQC Report
Wed 25 May 2016
SRR1779792_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779792_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65131
Sequences flagged as poor quality0
Sequence length76
%GC48

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTAGA207.872656E-570.0000136
CTATCGG150.002215462770.042
TTTGTTA150.002215462770.09
TGGCCAC150.002215462770.049
GGCTTAG252.8109826E-670.029
TCGTGTA150.002215462770.034
GGTGGAT150.002215462770.047
CTAGGTG150.002215462770.044
TATCGGT150.002215462770.043
TGGTCGC1000.066.549
GGTGGTC1100.063.6363647
CGGTGGT1050.063.33333246
TTACGCT352.9322473E-760.013
GTGGTCG1050.059.99999648
GGTCGCC1350.059.62962750
TTAGGTG308.292001E-658.33333232
GCCCACG308.292001E-658.33333220
CCGAATC308.292001E-658.33333255
CCGGTGG308.292001E-658.33333245
CTCGGTG1000.055.99999644
Produced by FastQC (version 0.11.5)