FastQCFastQC Report
Wed 25 May 2016
SRR1779791_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779791_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56426
Sequences flagged as poor quality0
Sequence length76
%GC49

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGTC150.002213920770.0000150
AGGACAG150.002213920770.0000130
CACCTTG150.002213920770.000011
GGCCTCT150.002213920770.0000125
TGGTCCA150.002213920770.0000149
GCTTAGG207.863532E-570.030
TCGGCGG453.7471182E-1062.22222545
AGGCTTA352.9251532E-760.00000428
TTACGTG308.2776605E-658.33333632
CTCGGCG553.45608E-1157.27272444
CTTAAAG252.3715281E-455.99999642
GAGGATA252.3715281E-455.99999629
TCGGGGG252.3715281E-455.99999645
CCGTACC252.3715281E-455.99999655
AAGGCTT509.531504E-1055.99999627
AGAGGAT252.3715281E-455.99999628
CTTAGGT252.3715281E-455.99999631
CTAGGTG252.3715281E-455.99999644
ACGAACG252.3715281E-455.99999624
GAAGGCT452.6424459E-854.44444726
Produced by FastQC (version 0.11.5)