##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779791_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 56426 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.50680537340942 23.0 12.0 32.0 12.0 34.0 2 21.43311593946053 21.0 12.0 32.0 12.0 34.0 3 21.501559564739658 23.0 11.0 32.0 11.0 34.0 4 22.27620245985893 23.0 12.0 32.0 12.0 34.0 5 21.508701662354234 23.0 11.0 32.0 11.0 34.0 6 22.80225427994187 22.0 12.0 34.0 11.0 38.0 7 22.851770460426046 21.0 12.0 34.0 11.0 38.0 8 22.32717187112324 21.0 11.0 34.0 11.0 38.0 9 23.647166199978734 26.0 11.0 34.0 11.0 38.0 10-11 22.856085846949988 22.5 11.5 34.0 11.0 38.0 12-13 23.039724595044838 23.0 11.0 34.0 11.0 38.0 14-15 22.356989685605924 22.0 11.0 34.0 11.0 38.0 16-17 22.353055329103604 22.0 11.0 33.5 11.0 38.0 18-19 22.166616453408004 21.0 11.0 34.0 10.5 38.0 20-21 22.438556693722752 22.5 11.0 32.5 10.5 38.0 22-23 22.45160032609081 22.0 11.0 34.0 10.5 38.0 24-25 22.595753730549745 22.5 11.0 34.0 10.0 38.0 26-27 21.921206535994045 21.0 11.0 33.0 10.0 38.0 28-29 21.868677559990076 21.0 11.0 34.0 10.5 38.0 30-31 21.94545067876511 21.0 11.0 34.0 11.0 38.0 32-33 22.14262042320916 21.0 11.0 34.0 11.0 38.0 34-35 22.335767199517953 21.0 11.0 34.0 11.0 38.0 36-37 22.1295767908411 21.0 11.0 34.0 11.0 38.0 38-39 21.872505582532874 21.0 11.0 34.0 11.0 38.0 40-41 21.773925140892494 21.0 11.0 34.0 11.0 38.0 42-43 22.048603480664944 21.0 11.0 34.0 11.0 38.0 44-45 22.23307517810938 21.0 11.0 34.0 11.0 38.0 46-47 22.07880232516925 21.0 11.0 34.0 11.0 38.0 48-49 21.78202424414277 21.0 11.0 34.0 11.0 38.0 50-51 21.583693687307267 21.0 11.0 32.5 11.0 38.0 52-53 21.8903785488959 21.0 11.0 34.0 11.0 38.0 54-55 21.84692340410449 21.0 11.0 34.0 11.0 38.0 56-57 21.78849289334704 21.0 11.0 34.0 11.0 38.0 58-59 21.60598837415376 21.0 11.0 33.5 11.0 38.0 60-61 21.976712862864638 21.0 11.0 34.0 11.0 38.0 62-63 21.644472406337506 21.0 11.0 34.0 11.0 38.0 64-65 21.625137348031046 21.0 11.0 33.5 11.0 38.0 66-67 22.091571261475206 21.5 11.0 33.5 11.0 38.0 68-69 21.867011661290896 21.5 11.0 33.0 10.5 38.0 70-71 22.090720589799027 22.0 11.0 33.5 11.0 38.0 72-73 21.728139510154893 21.5 11.0 32.5 11.0 38.0 74-75 21.485529720341688 21.0 11.0 32.0 11.0 38.0 76 21.16194662035232 21.0 11.0 31.0 11.0 37.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 11 2.0 12 34.0 13 550.0 14 2304.0 15 4361.0 16 5860.0 17 6656.0 18 6543.0 19 5584.0 20 4250.0 21 2971.0 22 2003.0 23 1420.0 24 1037.0 25 758.0 26 558.0 27 486.0 28 406.0 29 361.0 30 372.0 31 417.0 32 468.0 33 600.0 34 797.0 35 1122.0 36 2160.0 37 4346.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.914578385850497 20.483465069294297 8.50848899443519 51.09346755042002 2 9.474355793428561 37.95945131676886 26.542728529401337 26.02346436040123 3 9.075603445220288 21.42452061106582 31.398646014248747 38.10122992946514 4 9.327260482756177 36.162407400843584 23.758551022578246 30.751781093821997 5 10.147804203735866 30.0818771488321 36.02417325346472 23.746145393967318 6 13.33782298940205 39.9390351965406 23.460815935916067 23.262325878141283 7 25.50642445724413 25.03145768719539 15.197164377492248 34.264953478068236 8 12.85423128046079 40.54231280460789 22.741692512184315 23.86176340274701 9 20.003899050049625 19.376506451155535 15.54834822061534 45.0712462781795 10-11 13.59668944005813 33.2456070393705 22.729085254007497 30.428618266563877 12-13 13.341367454719455 22.901676532095134 26.45588912912487 37.30106688406054 14-15 27.1931379151455 27.716832665792364 18.133484563853543 26.95654485520859 16-17 29.93300960550101 23.341190231453584 16.16630631269273 30.559493850352677 18-19 19.214000886132034 23.243243243243246 21.47984049623394 36.06291537439078 20-21 25.969411264310775 22.51267146350973 17.973983624570234 33.54393364760926 22-23 30.450771371099943 21.373315256400033 15.846558736741368 32.329354635758655 24-25 18.756203034169857 32.468453140507584 14.96260456543315 33.812739259889405 26-27 24.160847836103923 33.0769503420409 17.48130294545068 25.280898876404496 28-29 19.782362115411882 30.234474691620587 21.950765631646107 28.032397561321424 30-31 21.907454010562507 26.744763052493532 22.88927090348421 28.458512033459755 32-33 16.627972920284975 31.786764966504805 22.553432814659907 29.031829298550317 34-35 15.350465219317677 37.866194062915376 18.98449268941072 27.798848028356225 36-37 24.039986883734947 25.056497425489866 20.69356682648422 30.20994886429097 38-39 25.724438615458233 21.257288694326782 25.721780125126276 27.296492565088705 40-41 18.629709708290505 29.325133803565734 22.186580654308298 29.858575833835467 42-43 12.655513415801225 28.188246553007478 25.035444653174068 34.12079537801723 44-45 12.712337506978228 22.792000070889934 31.38651850670353 33.109143915428305 46-47 16.09127159946832 28.099246787771374 25.44528134692069 30.364200265839607 48-49 17.540672739517245 29.518307163364405 21.967709920958423 30.973310176159924 50-51 26.02280883643034 28.380785283249594 16.11150986699276 29.484896013327305 52-53 11.521999202445834 32.99127121272542 21.692587177101334 33.79414240772741 54-55 15.275685447423923 25.825461248072596 21.76417418428655 37.13467912021694 56-57 19.214136329800432 29.407855091985397 18.00893268583177 33.369075892382405 58-59 16.76148951631485 29.485475266301552 19.209159710037042 34.543875507346556 60-61 12.362846760613312 26.45395728086502 21.665337233005406 39.51785872551626 62-63 17.08436724565757 27.757001063452673 19.407125132931586 35.751506557958166 64-65 17.363443795478112 26.519777716721766 18.832037862606242 37.284740625193876 66-67 13.332388025310623 37.16478491288396 14.564242542405928 34.93858451939949 68-69 15.302342891574805 41.23365115372346 12.606777017686882 30.857228937014852 70-71 12.47485622635156 42.608395140494984 15.507173175248779 29.40957545790467 72-73 15.208202256152134 41.848697794358735 15.11604207466747 27.82705787482166 74-75 17.71383502888944 40.9113466378363 13.452199496650245 27.922618836624014 76 14.231028249388581 45.87778683585581 12.13624924680112 27.754935667954488 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 2.5 16 3.5 17 2.0 18 5.0 19 15.5 20 23.5 21 24.0 22 26.5 23 30.5 24 35.0 25 38.0 26 54.5 27 89.0 28 128.5 29 150.0 30 185.0 31 283.0 32 393.0 33 440.0 34 512.0 35 713.0 36 934.0 37 1026.0 38 1173.5 39 1518.0 40 1817.5 41 2158.0 42 2396.0 43 2574.0 44 2923.0 45 3239.5 46 3385.0 47 3513.0 48 3683.0 49 3637.5 50 3550.0 51 3499.0 52 3351.0 53 3124.0 54 2994.0 55 2776.5 56 2435.0 57 2139.5 58 1968.0 59 1810.0 60 1499.5 61 1204.5 62 1062.0 63 1000.5 64 831.0 65 674.5 66 552.0 67 478.0 68 424.0 69 318.5 70 233.0 71 199.0 72 188.5 73 154.5 74 123.0 75 115.0 76 95.0 77 75.0 78 62.0 79 49.0 80 47.0 81 31.0 82 22.0 83 27.0 84 21.5 85 15.5 86 10.0 87 5.0 88 5.5 89 6.0 90 5.0 91 3.0 92 2.0 93 3.5 94 3.0 95 2.0 96 3.0 97 2.0 98 1.5 99 3.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0017722326587034348 8 0.0017722326587034348 9 0.0035444653174068696 10-11 8.861163293517174E-4 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0017722326587034348 20-21 0.0 22-23 8.861163293517174E-4 24-25 0.0035444653174068696 26-27 0.0 28-29 0.0035444653174068696 30-31 0.0 32-33 0.0 34-35 0.0017722326587034348 36-37 0.013291744940275761 38-39 0.005316697976110304 40-41 0.0 42-43 0.0 44-45 8.861163293517174E-4 46-47 0.0017722326587034348 48-49 0.0 50-51 8.861163293517174E-4 52-53 0.006202814305462021 54-55 0.005316697976110304 56-57 0.007088930634813739 58-59 0.008861163293517172 60-61 0.01949455924573778 62-63 0.010633395952220608 64-65 0.020380675575089498 66-67 0.012405628610924042 68-69 0.0 70-71 8.861163293517174E-4 72-73 0.004430581646758586 74-75 0.007088930634813739 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 56426.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 93.09715379435012 #Duplication Level Percentage of deduplicated Percentage of total 1 96.66101920770592 89.9886577109843 2 1.4638975081380519 2.7256938290858823 3 0.8014315356646552 2.238329847942438 4 0.5101749443185928 1.8998334101300818 5 0.2988711427538025 1.3912026370821962 6 0.15229102815480383 0.8506716761776487 7 0.06091641126192153 0.39698011554956936 8 0.02094001637128553 0.15595647396590223 9 0.011421827111610288 0.09570056356998546 >10 0.01903637851935048 0.25697373551199804 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.012405628610924042 0.0 2 0.0 0.0 0.0 0.012405628610924042 0.0 3 0.0 0.0 0.0 0.012405628610924042 0.0 4 0.0 0.0 0.0 0.021266791904441217 0.0 5 0.0 0.0 0.0 0.03367242051536526 0.0 6 0.0 0.0 0.0 0.03367242051536526 0.0 7 0.0 0.0 0.0 0.03367242051536526 0.0 8 0.0017722326587034346 0.0 0.0 0.03367242051536526 0.0 9 0.0017722326587034346 0.0 0.0 0.03367242051536526 0.0 10 0.0017722326587034346 0.0 0.0 0.03898911849147556 0.0 11 0.0017722326587034346 0.0 0.0 0.03898911849147556 0.0 12 0.0017722326587034346 0.0 0.0 0.03898911849147556 0.0 13 0.0017722326587034346 0.0 0.0 0.03898911849147556 0.0 14 0.0017722326587034346 0.0 0.0 0.03898911849147556 0.0 15 0.0017722326587034346 0.0 0.0 0.03898911849147556 0.0 16 0.0017722326587034346 0.0 0.0 0.03898911849147556 0.0 17 0.0017722326587034346 0.0 0.0 0.03898911849147556 0.0 18 0.0017722326587034346 0.0 0.0 0.040761351150178995 0.0 19 0.0017722326587034346 0.0 0.0 0.040761351150178995 0.0 20 0.0017722326587034346 0.0 0.0 0.06202814305462021 0.0 21 0.0017722326587034346 0.0 0.0 0.06202814305462021 0.0 22 0.0017722326587034346 0.0 0.0 0.10456172686350264 0.0 23 0.0017722326587034346 0.0 0.0 0.10633395952220608 0.0 24 0.0017722326587034346 0.0 0.0 0.1329174494027576 0.0 25 0.0017722326587034346 0.0 0.0 0.13646191472016447 0.0 26 0.0017722326587034346 0.0 0.0 0.14000638003757132 0.0 27 0.0017722326587034346 0.0 0.0 0.1683621025768263 0.0 28 0.0017722326587034346 0.0 0.0 0.1843121965051572 0.0 29 0.0017722326587034346 0.0 0.0 0.203806755750895 0.0 30 0.0017722326587034346 0.0 0.0 0.23216247829014994 0.0 31 0.0017722326587034346 0.0 0.0 0.2676071314642186 0.0 32 0.0017722326587034346 0.0 0.0 0.2764682947577358 0.0 33 0.0017722326587034346 0.0 0.0 0.29241838868606673 0.0 34 0.0017722326587034346 0.0017722326587034346 0.0 0.3952078828908659 0.0 35 0.0017722326587034346 0.0017722326587034346 0.0 0.4466026299932655 0.0 36 0.0017722326587034346 0.0017722326587034346 0.0 0.6061035692765746 0.0 37 0.0017722326587034346 0.0017722326587034346 0.0 0.7656045085598837 0.0 38 0.0017722326587034346 0.0017722326587034346 0.0 1.0208060114131783 0.0 39 0.0017722326587034346 0.0017722326587034346 0.0 1.2281572324814802 0.0 40 0.0017722326587034346 0.0017722326587034346 0.0 1.4408251515258923 0.0 41 0.0017722326587034346 0.0017722326587034346 0.0 1.6588097685464147 0.0 42 0.0017722326587034346 0.0017722326587034346 0.0 1.8572998263211995 0.0 43 0.0017722326587034346 0.0017722326587034346 0.0 2.1249069577854183 0.0 44 0.0017722326587034346 0.0017722326587034346 0.0 2.3730195300038988 0.0 45 0.0017722326587034346 0.0017722326587034346 0.0 2.6069542409527524 0.0 46 0.0017722326587034346 0.0017722326587034346 0.0 2.862155743806047 0.0 47 0.0017722326587034346 0.0017722326587034346 0.0 3.110268316024528 0.0 48 0.0017722326587034346 0.0017722326587034346 0.0 3.3495197249494915 0.0 49 0.0017722326587034346 0.0017722326587034346 0.0 3.5958600645092686 0.0 50 0.0017722326587034346 0.0017722326587034346 0.0 3.8156169141884946 0.0 51 0.0017722326587034346 0.0017722326587034346 0.0 4.026512600574203 0.0 52 0.0017722326587034346 0.0017722326587034346 0.0 4.32424768723638 0.0 53 0.0017722326587034346 0.0017722326587034346 0.0 4.547549002233013 0.0 54 0.0017722326587034346 0.0017722326587034346 0.0 4.774394782547053 0.0 55 0.0017722326587034346 0.0017722326587034346 0.0 4.930351256512955 0.0 56 0.0017722326587034346 0.0017722326587034346 0.0 5.187324992024953 0.0 57 0.0017722326587034346 0.0017722326587034346 0.0 5.337964768014745 0.0 58 0.0017722326587034346 0.0017722326587034346 0.0 5.460248821465282 0.0 59 0.0017722326587034346 0.0017722326587034346 0.0 5.612660830113778 0.0 60 0.0017722326587034346 0.0017722326587034346 0.0 5.77393400205579 0.0 61 0.0017722326587034346 0.0017722326587034346 0.0 5.864317867649665 0.0 62 0.0017722326587034346 0.0017722326587034346 0.0 6.025591039591678 0.0 63 0.0017722326587034346 0.0017722326587034346 0.0 6.1336972317725875 0.0 64 0.0017722326587034346 0.0017722326587034346 0.0 6.328642824229965 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTCGTC 15 0.0022139207 70.00001 50 AGGACAG 15 0.0022139207 70.00001 30 CACCTTG 15 0.0022139207 70.00001 1 GGCCTCT 15 0.0022139207 70.00001 25 TGGTCCA 15 0.0022139207 70.00001 49 GCTTAGG 20 7.863532E-5 70.0 30 TCGGCGG 45 3.7471182E-10 62.222225 45 AGGCTTA 35 2.9251532E-7 60.000004 28 TTACGTG 30 8.2776605E-6 58.333336 32 CTCGGCG 55 3.45608E-11 57.272724 44 CTTAAAG 25 2.3715281E-4 55.999996 42 GAGGATA 25 2.3715281E-4 55.999996 29 TCGGGGG 25 2.3715281E-4 55.999996 45 CCGTACC 25 2.3715281E-4 55.999996 55 AAGGCTT 50 9.531504E-10 55.999996 27 AGAGGAT 25 2.3715281E-4 55.999996 28 CTTAGGT 25 2.3715281E-4 55.999996 31 CTAGGTG 25 2.3715281E-4 55.999996 44 ACGAACG 25 2.3715281E-4 55.999996 24 GAAGGCT 45 2.6424459E-8 54.444447 26 >>END_MODULE