FastQCFastQC Report
Wed 25 May 2016
SRR1779790_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779790_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45545
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTTCG150.00220467870.05170432
AGCGTAG150.00220467870.05170435
TGCTAGC150.00220467870.05170436
CTTGTCA207.861244E-569.9747241
GAAGACG150.002214328269.97472414
CCGGAGT150.002214328269.97472427
TAGCCCG207.861244E-569.9747245
ACGGGAG150.002214328269.9747243
GTGCTAC150.002214328269.97472446
TCATCGT150.002214328269.9747245
GTGACGC150.002214328269.97472414
GCCCGCT150.002214328269.9747247
CTTACGC207.861244E-569.97472412
TGCCGCT150.002214328269.97472413
ACGAAGG150.002214328269.97472424
TCTCGGT501.2732926E-1162.9772543
CTCGGTG453.7289283E-1062.19975744
TGTGTAG308.215824E-658.37642335
GGAGTAG252.357984E-456.0413635
ATATGTA252.3708568E-455.9797826
Produced by FastQC (version 0.11.5)