##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779790_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 45545 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.131869579536723 32.0 21.0 34.0 12.0 34.0 2 26.49689318256669 33.0 21.0 34.0 12.0 34.0 3 26.345482489845207 33.0 21.0 34.0 11.0 34.0 4 26.930310681743332 33.0 21.0 34.0 12.0 34.0 5 26.15525304643759 34.0 11.0 34.0 11.0 34.0 6 29.304665715226697 36.0 21.0 38.0 11.0 38.0 7 29.480052695136678 36.0 21.0 38.0 12.0 38.0 8 29.01850916675815 34.0 21.0 38.0 11.0 38.0 9 29.479394005928203 36.0 21.0 38.0 11.0 38.0 10-11 28.4324404435174 34.0 21.0 38.0 11.0 38.0 12-13 28.949357778021735 35.5 21.0 38.0 11.0 38.0 14-15 27.90840926556153 33.5 16.0 38.0 11.0 38.0 16-17 28.24787572730267 34.5 16.5 38.0 11.0 38.0 18-19 28.655253046437586 35.0 21.0 38.0 11.0 38.0 20-21 28.081051707102866 32.5 16.0 38.0 11.0 38.0 22-23 28.588538807772533 35.0 21.0 38.0 11.0 38.0 24-25 28.889021846525416 35.5 21.0 38.0 11.0 38.0 26-27 27.98724338566253 34.0 16.0 38.0 11.0 38.0 28-29 28.675760237128117 35.0 21.0 38.0 11.0 38.0 30-31 28.85794269403886 37.0 21.0 38.0 11.0 38.0 32-33 29.00626852563399 37.0 21.0 38.0 11.0 38.0 34-35 29.11287737402569 36.5 21.0 38.0 11.0 38.0 36-37 28.778416950268962 35.5 21.0 38.0 11.0 38.0 38-39 28.660489625644967 35.5 21.0 38.0 11.0 38.0 40-41 28.66387089691514 35.5 21.0 38.0 11.0 38.0 42-43 28.909155779997803 36.5 21.0 38.0 11.0 38.0 44-45 29.00703699637721 36.0 21.0 38.0 11.0 38.0 46-47 28.889065759139314 36.0 21.0 38.0 11.0 38.0 48-49 28.669030629048194 35.5 21.0 38.0 11.0 38.0 50-51 28.209561971676365 35.0 16.0 38.0 11.0 38.0 52-53 28.71944230980349 35.5 21.0 38.0 11.0 38.0 54-55 28.746020419365465 36.0 21.0 38.0 11.0 38.0 56-57 28.744834778790207 36.0 21.0 38.0 11.0 38.0 58-59 28.78252277966846 36.0 21.0 38.0 11.0 38.0 60-61 28.849017455264026 36.0 21.0 38.0 11.0 38.0 62-63 28.73351630255791 36.0 21.0 38.0 11.0 38.0 64-65 28.74790866176309 36.0 20.0 38.0 11.0 38.0 66-67 28.821374464815015 36.0 21.0 38.0 11.0 38.0 68-69 28.4139532330662 34.0 21.0 38.0 11.0 38.0 70-71 28.34045449555385 34.0 20.5 38.0 11.0 38.0 72-73 28.362959710176746 34.5 19.5 38.0 11.0 38.0 74-75 28.481304204632778 35.5 20.0 38.0 11.0 38.0 76 27.73430672960808 34.0 19.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 40.0 13 342.0 14 1230.0 15 2039.0 16 2654.0 17 2841.0 18 2743.0 19 2163.0 20 1656.0 21 1155.0 22 759.0 23 564.0 24 415.0 25 353.0 26 351.0 27 347.0 28 418.0 29 467.0 30 552.0 31 675.0 32 817.0 33 1222.0 34 1786.0 35 2806.0 36 5340.0 37 11810.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.537819738719946 21.418377428916457 16.5111428257767 32.532660006586894 2 22.38225930398507 21.637940498408167 32.02546931606104 23.954330881545722 3 14.816115929300691 29.241409594906138 31.37556263036557 24.5669118454276 4 11.344823800636734 27.57053463607421 26.101657701174663 34.982983862114395 5 20.498408167746184 31.050609287517837 29.287517839499394 19.16346470523658 6 22.50301899220551 43.63157316939291 14.21012185750357 19.655285980898014 7 19.699198594796353 36.032495334284775 16.041277857064443 28.227028213854428 8 17.218135909540017 45.39686024810627 15.360632341640137 22.02437150071358 9 20.077287897417882 22.580361847883363 16.693746706481644 40.64860354821711 10-11 19.355794881928663 31.62401607219313 21.98399367651418 27.03619536936403 12-13 18.56535915423377 25.372986859006026 25.082062598118327 30.979591388641875 14-15 25.199253485563727 27.5496761444725 20.315073004720606 26.935997365243164 16-17 26.688988912064993 26.306949171149412 19.92425074102536 27.079811175760238 18-19 20.904829342730736 26.381890239216588 23.017049259515417 29.696231158537255 20-21 24.696454056427708 25.41113184762323 21.551213085958942 28.34120100999012 22-23 26.418926336590186 25.13667801075859 20.275551652212098 28.168844000439126 24-25 20.463502728101087 30.9323848104601 19.7652845019706 28.83882795946821 26-27 23.705126797672634 30.431441431551214 21.42276869030629 24.440663080469864 28-29 21.436883824078343 28.836484201743406 23.688601980545858 26.03802999363239 30-31 22.149522450323854 27.895487978921945 23.91700515973213 26.037984411022062 32-33 19.36656054451641 30.223954330881547 23.57778021736744 26.831704907234606 34-35 18.345995081679256 32.11839100649921 23.04584577551379 26.489768136307745 36-37 23.41838863391818 26.688113485144598 23.40631107402446 26.487186806912753 38-39 23.75933245498463 24.89020641194554 25.665349143610012 25.685111989459813 40-41 20.61170942704388 28.56546893697373 24.00070260953573 26.82211902644666 42-43 17.460944790260076 27.81235934086443 25.723193799470845 29.003502069404647 44-45 17.267387604984354 25.169896250754793 28.58868090245375 28.974035241807105 46-47 19.202055245707257 27.155153484695443 26.12862851872996 27.51416275086733 48-49 19.37994708471934 28.293207741878824 24.915192833382736 27.411652340019106 50-51 24.104692268844826 27.199569637485453 21.849680521704762 26.846057571964955 52-53 15.762892370527332 30.20059068301841 24.425511358021982 29.611005588432278 54-55 17.897059792275094 27.01411914538548 24.12002371489427 30.96879734744516 56-57 19.394365269329587 28.167065592129823 23.062649597048683 29.375919541491907 58-59 18.583099086437105 28.216136683063947 23.55718552354181 29.643578706957136 60-61 16.58175030196552 26.856264411990775 24.261557044032063 32.30042824201164 62-63 18.920462031709782 27.20914401159471 22.89845843032193 30.971935526373578 64-65 19.162814191748932 26.264179120867055 22.952331799663984 31.62067488772003 66-67 17.35292179985506 31.152689022113883 20.432834837604585 31.06155434042647 68-69 18.414956800491826 33.386029048512995 19.30639264894773 28.89262150204745 70-71 19.095609788229094 31.890788130290154 19.195512081590532 29.81808999989022 72-73 20.292018882423974 31.42386650565375 19.364364913821493 28.919749698100777 74-75 18.38034277181849 30.275249503189468 20.4762793557383 30.86812836925374 76 17.773630475354047 30.209682731364584 20.469864968712262 31.54682182456911 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.5 16 5.5 17 10.0 18 19.5 19 29.5 20 34.5 21 39.0 22 60.0 23 101.5 24 141.5 25 161.0 26 206.0 27 288.5 28 335.0 29 344.0 30 382.0 31 519.5 32 647.5 33 676.0 34 758.5 35 974.0 36 1177.5 37 1248.0 38 1294.5 39 1410.0 40 1675.5 41 1945.0 42 2018.0 43 2055.0 44 2194.5 45 2390.5 46 2484.0 47 2474.0 48 2479.0 49 2416.5 50 2339.0 51 2246.0 52 2128.5 53 2010.5 54 1917.0 55 1832.0 56 1719.0 57 1546.0 58 1401.0 59 1330.0 60 1163.5 61 973.5 62 879.0 63 800.0 64 668.5 65 536.5 66 427.0 67 397.0 68 386.0 69 354.5 70 293.0 71 252.0 72 224.0 73 175.0 74 142.0 75 130.0 76 126.0 77 102.5 78 77.0 79 71.0 80 58.5 81 52.5 82 44.0 83 29.0 84 25.0 85 23.5 86 17.5 87 9.0 88 9.0 89 9.5 90 5.0 91 5.0 92 10.0 93 6.5 94 4.0 95 3.5 96 2.0 97 1.5 98 1.5 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.002195630694917115 10-11 0.0010978153474585574 12-13 0.0010978153474585574 14-15 0.0 16-17 0.0 18-19 0.0010978153474585574 20-21 0.0 22-23 0.0 24-25 0.0010978153474585574 26-27 0.0 28-29 0.00439126138983423 30-31 0.0 32-33 0.0 34-35 0.002195630694917115 36-37 0.01317378416950269 38-39 0.010978153474585575 40-41 0.0010978153474585574 42-43 0.0010978153474585574 44-45 0.0054890767372927874 46-47 0.006586892084751345 48-49 0.0010978153474585574 50-51 0.00439126138983423 52-53 0.009880338127127016 54-55 0.00878252277966846 56-57 0.01317378416950269 58-59 0.019760676254254032 60-61 0.02195630694917115 62-63 0.015369414864419803 64-65 0.025249752991546824 66-67 0.01756504555933692 68-69 0.0010978153474585574 70-71 0.0010978153474585574 72-73 0.0 74-75 0.009880338127127016 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 45545.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.28883521791634 #Duplication Level Percentage of deduplicated Percentage of total 1 87.54828079842261 71.16697771434845 2 6.498662993274451 10.565374903941157 3 3.2277233071334037 7.871336041277857 4 1.5746968100910246 5.120210780546712 5 0.7292763957539907 2.9641014381381052 6 0.2349890608540637 1.146119222746734 7 0.11614401858304298 0.6608848391700516 8 0.04591740269562164 0.29860577450872766 9 0.01620614212786646 0.11856405752552421 >10 0.00810307106393323 0.0878252277966846 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.002195630694917115 0.0 5 0.0 0.0 0.0 0.019760676254254036 0.0 6 0.0 0.0 0.0 0.019760676254254036 0.0 7 0.0 0.0 0.0 0.019760676254254036 0.0 8 0.0 0.0 0.0 0.02195630694917115 0.0 9 0.0 0.0 0.0 0.02195630694917115 0.0 10 0.0 0.0 0.0 0.02195630694917115 0.0 11 0.0 0.0 0.0 0.024151937644088264 0.0 12 0.0 0.0 0.0 0.024151937644088264 0.0 13 0.0 0.0 0.0 0.024151937644088264 0.0 14 0.0 0.0 0.0 0.028543199033922495 0.0 15 0.0 0.0 0.0 0.03073882972883961 0.0 16 0.0 0.0 0.0 0.03073882972883961 0.0 17 0.0 0.0 0.0 0.03073882972883961 0.0 18 0.0 0.0 0.0 0.03073882972883961 0.0 19 0.0 0.0 0.0 0.04830387528817653 0.0 20 0.0 0.0 0.0 0.059282028762762104 0.0 21 0.0 0.0 0.0 0.06147765945767922 0.0 22 0.0 0.0 0.0 0.1163684268306071 0.0 23 0.0 0.0 0.0 0.12075968822044132 0.0 24 0.0 0.0 0.0 0.12075968822044132 0.0 25 0.0 0.0 0.0 0.12075968822044132 0.0 26 0.0 0.0 0.0 0.12295531891535844 0.0 27 0.0 0.0 0.0 0.1295422110001098 0.0 28 0.0 0.0 0.0 0.15149851794928093 0.0 29 0.0 0.0 0.0 0.18223734767812055 0.0 30 0.0 0.0 0.0 0.18662860906795478 0.0 31 0.0 0.0 0.0 0.20858491601712592 0.0 32 0.0 0.0 0.0 0.248106268525634 0.0 33 0.0 0.0 0.0 0.2788450982544736 0.0 34 0.0 0.0 0.0 0.34910528049182127 0.0 35 0.0 0.0 0.0 0.43473487759358875 0.0 36 0.0 0.0 0.0 0.5884290262377868 0.0 37 0.0 0.0 0.0 0.801405203644747 0.0 38 0.0 0.0 0.0 1.0473158414754637 0.0 39 0.0 0.0 0.0 1.3283565704248546 0.0 40 0.0 0.0 0.0 1.7213744648150182 0.0 41 0.0 0.0 0.0 2.195630694917115 0.0 42 0.0 0.0 0.0 2.5666922823581073 0.0 43 0.0 0.0 0.0 3.0453397738500385 0.0 44 0.0 0.0 0.0 3.515204742562301 0.0 45 0.0 0.0 0.0 4.1146119222746735 0.0 46 0.0 0.0 0.0 4.678889010868372 0.0 47 0.0 0.0 0.0 5.133384564716215 0.0 48 0.0 0.0 0.0 5.627401471072566 0.0 49 0.0 0.0 0.0 6.090679547700077 0.0 50 0.0 0.0 0.0 6.532001317378417 0.0 51 0.0 0.0 0.0 7.052365792073773 0.0 52 0.0 0.0 0.0 7.54199143704029 0.0 53 0.0 0.0 0.0 7.976726314633878 0.0 54 0.0 0.0 0.0 8.45537380612581 0.0 55 0.0 0.0 0.0 8.88132616093973 0.0 56 0.0 0.0 0.0 9.33801734548249 0.0 57 0.0 0.0 0.0 9.750795916126908 0.0 58 0.0 0.0 0.0 10.095509935228895 0.0 59 0.0 0.0 0.0 10.48633219892414 0.0 60 0.0 0.0 0.0 10.918871445822813 0.0 61 0.0 0.0 0.0 11.34701943133165 0.0 62 0.0 0.0 0.0 11.68075529695905 0.0 63 0.0 0.0 0.0 12.036447469535624 0.0 64 0.0 0.0 0.0 12.425074102535953 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTTCG 15 0.002204678 70.051704 32 AGCGTAG 15 0.002204678 70.051704 35 TGCTAGC 15 0.002204678 70.051704 36 CTTGTCA 20 7.861244E-5 69.974724 1 GAAGACG 15 0.0022143282 69.974724 14 CCGGAGT 15 0.0022143282 69.974724 27 TAGCCCG 20 7.861244E-5 69.974724 5 ACGGGAG 15 0.0022143282 69.974724 3 GTGCTAC 15 0.0022143282 69.974724 46 TCATCGT 15 0.0022143282 69.974724 5 GTGACGC 15 0.0022143282 69.974724 14 GCCCGCT 15 0.0022143282 69.974724 7 CTTACGC 20 7.861244E-5 69.974724 12 TGCCGCT 15 0.0022143282 69.974724 13 ACGAAGG 15 0.0022143282 69.974724 24 TCTCGGT 50 1.2732926E-11 62.97725 43 CTCGGTG 45 3.7289283E-10 62.199757 44 TGTGTAG 30 8.215824E-6 58.376423 35 GGAGTAG 25 2.357984E-4 56.04136 35 ATATGTA 25 2.3708568E-4 55.97978 26 >>END_MODULE