FastQCFastQC Report
Wed 25 May 2016
SRR1779789_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779789_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123579
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTGTGC150.002221567669.9890758
ATCACGA200.00693059952.51306554
CTTACGC200.00693059952.51306554
TGGACTG200.006941712552.4918025
CGAGCGG200.006941712552.49180225
GATCTCG200.006941712552.49180241
CGGTAGG200.006941712552.4918024
CGCCACG200.006941712552.49180270
CGACGAT200.006952839452.4705622
CGTTAGT200.006952839452.4705616
CTACCCG200.006952839452.4705610
GGATTTG200.006952839452.4705620
GCATGTT200.006952839452.4705611
GTAGATC506.129267E-849.0121938
CGACGAA506.168557E-848.9725222
TTATCCA350.001247401240.02616537
AGATCTC350.001252383639.99375540
GACGGCG350.001254880639.9775714
CTCGAAT459.140852E-538.89856767
GGCAAGC459.184596E-538.8670821
Produced by FastQC (version 0.11.5)