##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779789_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 123579 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.699754812710896 34.0 32.0 34.0 21.0 34.0 2 31.34959823270944 34.0 33.0 34.0 23.0 34.0 3 31.11529466980636 34.0 33.0 34.0 23.0 34.0 4 31.24831888913165 34.0 33.0 34.0 23.0 34.0 5 31.85931266639154 34.0 34.0 34.0 23.0 34.0 6 34.46790312269884 38.0 35.0 38.0 24.0 38.0 7 34.61217520776184 38.0 36.0 38.0 25.0 38.0 8 33.79592811076316 38.0 34.0 38.0 21.0 38.0 9 34.92098172019518 38.0 36.0 38.0 27.0 38.0 10-11 33.539788313548414 37.5 32.5 38.0 19.0 38.0 12-13 34.56337646363865 38.0 36.0 38.0 25.0 38.0 14-15 33.17797926832229 37.5 32.5 38.0 16.0 38.0 16-17 33.97836606543183 38.0 35.0 38.0 19.0 38.0 18-19 34.96781815680657 38.0 36.5 38.0 26.5 38.0 20-21 33.51694867250909 38.0 33.0 38.0 18.5 38.0 22-23 34.508702934964674 38.0 36.0 38.0 24.0 38.0 24-25 34.87741444743848 38.0 36.5 38.0 26.0 38.0 26-27 33.70865195542932 38.0 34.0 38.0 21.5 38.0 28-29 35.150543377111 38.0 36.5 38.0 28.5 38.0 30-31 35.52598337905307 38.0 37.0 38.0 31.0 38.0 32-33 35.60623568729315 38.0 37.0 38.0 31.0 38.0 34-35 35.593211629807655 38.0 37.0 38.0 31.0 38.0 36-37 35.07731086996982 38.0 37.0 38.0 26.0 38.0 38-39 35.05948421657401 38.0 36.5 38.0 27.5 38.0 40-41 35.049632219066346 38.0 36.5 38.0 26.5 38.0 42-43 35.38448280047581 38.0 37.0 38.0 29.0 38.0 44-45 35.44411671886 38.0 37.0 38.0 30.5 38.0 46-47 35.3701923465961 38.0 37.0 38.0 29.0 38.0 48-49 35.14425590108351 38.0 36.5 38.0 28.5 38.0 50-51 34.43947596274448 38.0 35.5 38.0 24.0 38.0 52-53 35.04234942830092 38.0 36.5 38.0 27.0 38.0 54-55 35.21319965366284 38.0 37.0 38.0 29.0 38.0 56-57 35.22348457262156 38.0 37.0 38.0 27.0 38.0 58-59 35.451541119445864 38.0 37.0 38.0 30.5 38.0 60-61 35.33875496645871 38.0 37.0 38.0 27.5 38.0 62-63 35.34477540682478 38.0 37.0 38.0 27.5 38.0 64-65 35.39372385275816 38.0 37.0 38.0 29.0 38.0 66-67 35.12016200163458 38.0 37.0 38.0 27.0 38.0 68-69 34.454429959782814 38.0 36.0 38.0 23.5 38.0 70-71 34.47754472847328 38.0 35.5 38.0 24.0 38.0 72-73 34.88821725374052 38.0 36.0 38.0 26.0 38.0 74-75 34.995666739494574 38.0 36.5 38.0 26.5 38.0 76 34.04127723966046 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 10.0 13 163.0 14 608.0 15 966.0 16 1215.0 17 1195.0 18 1148.0 19 975.0 20 783.0 21 576.0 22 473.0 23 505.0 24 512.0 25 592.0 26 690.0 27 882.0 28 1155.0 29 1399.0 30 1997.0 31 2630.0 32 3563.0 33 5188.0 34 7725.0 35 12784.0 36 25221.0 37 50623.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.60027998284498 21.06668608744204 9.544501897571594 26.788532032141383 2 22.019113279764362 21.205059111985047 30.388658267181317 26.387169341069278 3 19.73798137223962 21.212341902750467 30.554544056838136 28.495132668171774 4 13.652805088243147 19.31477030887125 34.984099240162166 32.04832536272344 5 14.887642722469026 32.861570331528824 35.2932132482056 16.95757369779655 6 27.548369868667006 37.17945605644972 18.664174333826942 16.60799974105633 7 27.766358619127 29.538576075873568 22.057228866913754 20.63783643808568 8 24.579405219502327 34.14444669229213 18.7667408456403 22.509407242565242 9 24.545189693124435 18.002233587983945 20.413051922827915 37.0395247960637 10-11 23.96874785050435 24.88640547681377 25.471068294281636 25.673778378400247 12-13 24.207996504260432 23.468793241570168 26.16463962323696 26.158570630932438 14-15 23.74037555076328 24.355369259215802 23.627087236048343 28.277167953972576 16-17 24.25331164680083 26.896964694648766 24.65103294249023 24.198690716060174 18-19 22.41342337275593 26.711200844827655 26.420690185352274 24.454685597064145 20-21 22.916110342372086 26.05013796842506 26.95644081923304 24.077310869969818 22-23 24.116752172716826 25.967000598812085 25.901859554289597 24.01438767418149 24-25 21.962686778528106 27.780182965069937 26.014056184276008 24.243074072125946 26-27 22.47770638786839 27.50530029616922 26.50431306543236 23.51268025053003 28-29 22.187200330167876 27.310871667469154 27.46219861054352 23.039729391819446 30-31 22.47851559339041 26.902846785026462 26.975675282008126 23.642962339575003 32-33 21.74731041402833 27.883491060338166 26.67575670525213 23.693441820381377 34-35 22.128126175919594 27.73814774203207 26.828162996111626 23.305563085936708 36-37 23.54238495281568 26.691513297398796 25.952993735735447 23.813108014050083 38-39 22.971966852259484 26.79739091026803 27.10248608053865 23.128156156933834 40-41 22.52756367461714 26.569157006736667 27.280046934110175 23.62323238453602 42-43 21.516457283890674 27.036879690882238 27.153001153122535 24.29366187210455 44-45 21.377097469885857 26.307441440785297 27.915012765888576 24.400448323440273 46-47 21.45313739136064 26.385404696780878 27.86548950426465 24.29596840759383 48-49 21.419988104726954 26.677779710872034 27.85516898165943 24.04706320274158 50-51 22.590956172719622 26.23648604907102 27.24720010357998 23.925357674629378 52-53 20.855454839753964 26.644545160246036 27.75412754936873 24.745872450631275 54-55 20.3884516559775 26.787383413923564 27.82001739939709 25.004147530701843 56-57 20.58950878314672 26.769072640528325 27.60590965559382 25.035508920731143 58-59 21.02232491512324 26.708966789817218 26.970779733169316 25.29792856189023 60-61 20.47227842978551 25.890327802509105 27.7838931606637 25.853500607041685 62-63 20.65205075912078 25.89710595319025 27.64478327020815 25.80606001748082 64-65 21.106839336301093 26.07122622420073 27.10967219749089 25.712262242007284 66-67 20.83567714129621 26.628356366726695 26.48388336941786 26.05208312255924 68-69 20.779993202673616 27.434899415753613 26.096473482335043 25.68863389923773 70-71 21.393775591124633 26.92388612859894 25.787356972923988 25.894981307352445 72-73 21.81657070488414 26.25927079835078 25.756331252250686 26.167827244514395 74-75 21.52022174115362 26.532057377546685 25.753535517025107 26.194185364274585 76 21.643077371270422 25.80418052487194 25.940132553227645 26.61260955062999 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 6.0 16 16.5 17 23.0 18 24.5 19 38.0 20 59.5 21 69.0 22 91.0 23 169.5 24 300.0 25 374.0 26 416.0 27 490.5 28 642.0 29 761.0 30 932.5 31 1256.5 32 1791.0 33 2173.0 34 2404.5 35 2927.0 36 3585.0 37 3952.0 38 4400.0 39 5375.0 40 6438.5 41 7086.5 42 7198.0 43 7324.0 44 7758.5 45 7828.0 46 7589.0 47 7542.0 48 7366.5 49 6927.0 50 6616.0 51 6206.0 52 5279.5 53 4436.0 54 4109.0 55 3780.0 56 3199.5 57 2640.5 58 2333.0 59 2075.5 60 1721.5 61 1474.5 62 1324.0 63 1240.0 64 1080.5 65 978.0 66 848.0 67 745.0 68 707.5 69 646.0 70 591.0 71 560.0 72 508.0 73 470.5 74 459.5 75 434.0 76 391.0 77 315.5 78 270.0 79 257.0 80 227.5 81 187.0 82 151.0 83 126.0 84 120.0 85 94.5 86 72.0 87 69.0 88 56.5 89 41.5 90 33.5 91 26.5 92 25.0 93 21.0 94 13.5 95 7.0 96 4.0 97 3.5 98 4.5 99 3.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.004045994869678505 8 0.0032367958957428044 9 0.008901188713292712 10-11 0.0028321964087749535 12-13 0.0 14-15 4.0459948696785054E-4 16-17 0.0 18-19 0.0028321964087749535 20-21 0.0 22-23 8.091989739357011E-4 24-25 0.0028321964087749535 26-27 8.091989739357011E-4 28-29 0.004450594356646356 30-31 8.091989739357011E-4 32-33 4.0459948696785054E-4 34-35 0.004450594356646356 36-37 0.01699317845264972 38-39 0.008901188713292712 40-41 0.0012137984609035515 42-43 0.0012137984609035515 44-45 0.006068992304517758 46-47 0.004045994869678505 48-49 4.0459948696785054E-4 50-51 0.002427596921807103 52-53 0.01537478050477832 54-55 0.009305788200260562 56-57 0.01497018101781047 58-59 0.014160982043874767 60-61 0.02346677024413533 62-63 0.012137984609035516 64-65 0.02346677024413533 66-67 0.021443772809296078 68-69 8.091989739357011E-4 70-71 8.091989739357011E-4 72-73 0.004450594356646356 74-75 0.009305788200260562 76 0.004855193843614206 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 123579.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.01603023167367 #Duplication Level Percentage of deduplicated Percentage of total 1 75.76356378393433 46.22791898299873 2 11.402729334376616 13.914985555798316 3 5.491823932734772 10.052678853203215 4 2.7585109345781995 6.732535463145033 5 1.456175483734069 4.442502366906999 6 0.8302056947336313 3.0393513461024932 7 0.5384401151147833 2.2997434839252624 8 0.3819476678646738 1.8643944359478555 9 0.2891131652586767 1.5876483868618456 >10 1.0861636804901662 9.79373518154379 >50 0.001326207180085673 0.044505943566463556 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0016183979478714022 0.0 2 0.0 0.0 0.0 0.0016183979478714022 0.0 3 0.0 0.0 0.0 0.0016183979478714022 0.0 4 0.0 0.0 0.0 0.004045994869678505 0.0 5 0.0 0.0 0.0 0.004045994869678505 0.0 6 0.0 0.0 0.0 0.004045994869678505 0.0 7 0.0 0.0 0.0 0.004045994869678505 0.0 8 0.0 0.0 0.0 0.004045994869678505 0.0 9 0.0 0.0 0.0 0.004045994869678505 0.0 10 0.0 0.0 0.0 0.005664392817549907 0.0 11 0.0 0.0 0.0 0.005664392817549907 0.0 12 0.0 0.0 0.0 0.005664392817549907 0.0 13 0.0 0.0 0.0 0.005664392817549907 0.0 14 0.0 0.0 0.0 0.005664392817549907 0.0 15 0.0 0.0 0.0 0.005664392817549907 0.0 16 0.0 0.0 0.0 0.005664392817549907 0.0 17 0.0 0.0 0.0 0.005664392817549907 0.0 18 0.0 0.0 0.0 0.005664392817549907 0.0 19 0.0 0.0 0.0 0.00728279076542131 0.0 20 0.0 0.0 0.0 0.00728279076542131 0.0 21 0.0 0.0 0.0 0.00809198973935701 0.0 22 0.0 0.0 0.0 0.012137984609035516 0.0 23 0.0 0.0 0.0 0.012137984609035516 0.0 24 0.0 0.0 0.0 0.018611576400521124 0.0 25 0.0 0.0 0.0 0.021039173322328228 0.0 26 0.0 0.0 0.0 0.02346677024413533 0.0 27 0.0 0.0 0.0 0.02994036203562094 0.0 28 0.0 0.0 0.0 0.03236795895742804 0.0 29 0.0 0.0 0.0 0.04612434151433496 0.0 30 0.0 0.0 0.0 0.06311751996698468 0.0 31 0.0 0.0 0.0 0.0817290963675058 0.0 32 0.0 0.0 0.0 0.09548547892441273 0.0 33 0.0 0.0 0.0 0.12299824403822655 0.0 34 0.0 0.0 0.0 0.1577937999174617 0.0 35 0.0 0.0 0.0 0.21605612604083219 0.0 36 0.0 0.0 0.0 0.3091140080434378 0.0 37 0.0 0.0 0.0 0.4814733894917421 0.0 38 0.0 0.0 0.0 0.6951019186107672 0.0 39 0.0 0.0 0.0 1.0139263143414334 0.0 40 0.0 0.0 0.0 1.3732106587688846 0.0 41 0.0 0.0 0.0 1.7753825488149282 0.0 42 0.0 0.0 0.0 2.235816764984342 0.0 43 0.0 0.0 0.0 2.704342970893113 0.0 44 0.0 0.0 0.0 3.2214211152380257 0.0 45 0.0 0.0 0.0 3.7805776062275953 0.0 46 0.0 0.0 0.0 4.325977714660258 0.0 47 0.0 0.0 0.0 4.952297720486491 0.0 48 0.0 0.0 0.0 5.540585374537745 0.0 49 0.0 0.0 0.0 6.032578350690652 0.0 50 0.0 0.0 0.0 6.641905178064234 0.0 51 0.0 0.0 0.0 7.210772056741032 0.0 52 0.0 0.0 0.0 7.8395196594890715 0.0 53 0.0 0.0 0.0 8.465030466341368 0.0 54 0.0 0.0 0.0 9.049272125522945 0.0 55 0.0 0.0 0.0 9.612474611382194 0.0 56 0.0 0.0 0.0 10.210472653120675 0.0 57 0.0 0.0 0.0 10.771247542058116 0.0 58 0.0 0.0 0.0 11.377337573535957 0.0 59 0.0 0.0 0.0 11.96562522758721 0.0 60 0.0 0.0 0.0 12.600846422126736 0.0 61 0.0 0.0 0.0 13.21017324950032 0.0 62 0.0 0.0 0.0 13.855914030701008 0.0 63 0.0 0.0 0.0 14.42397171040387 0.0 64 0.0 0.0 0.0 15.055956109047655 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGTGC 15 0.0022215676 69.989075 8 ATCACGA 20 0.006930599 52.513065 54 CTTACGC 20 0.006930599 52.513065 54 TGGACTG 20 0.0069417125 52.491802 5 CGAGCGG 20 0.0069417125 52.491802 25 GATCTCG 20 0.0069417125 52.491802 41 CGGTAGG 20 0.0069417125 52.491802 4 CGCCACG 20 0.0069417125 52.491802 70 CGACGAT 20 0.0069528394 52.47056 22 CGTTAGT 20 0.0069528394 52.47056 16 CTACCCG 20 0.0069528394 52.47056 10 GGATTTG 20 0.0069528394 52.47056 20 GCATGTT 20 0.0069528394 52.47056 11 GTAGATC 50 6.129267E-8 49.01219 38 CGACGAA 50 6.168557E-8 48.97252 22 TTATCCA 35 0.0012474012 40.026165 37 AGATCTC 35 0.0012523836 39.993755 40 GACGGCG 35 0.0012548806 39.97757 14 CTCGAAT 45 9.140852E-5 38.898567 67 GGCAAGC 45 9.184596E-5 38.86708 21 >>END_MODULE