##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779789_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 123579 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.23986275985402 34.0 34.0 34.0 33.0 34.0 2 33.43781710484791 34.0 34.0 34.0 33.0 34.0 3 33.63548823020093 34.0 34.0 34.0 34.0 34.0 4 33.30701818270094 34.0 34.0 34.0 33.0 34.0 5 33.37881840765826 34.0 34.0 34.0 34.0 34.0 6 36.87228412594373 38.0 37.0 38.0 35.0 38.0 7 37.0553896697659 38.0 37.0 38.0 36.0 38.0 8 36.84871215983298 38.0 37.0 38.0 35.0 38.0 9 36.71063853891033 38.0 37.0 38.0 34.0 38.0 10-11 36.6570817048204 38.0 37.0 38.0 34.5 38.0 12-13 36.89676239490528 38.0 37.0 38.0 34.5 38.0 14-15 36.951686775261166 38.0 37.0 38.0 35.0 38.0 16-17 36.87611568308532 38.0 37.0 38.0 34.5 38.0 18-19 36.712734364252825 38.0 37.0 38.0 34.0 38.0 20-21 36.74789001367546 38.0 37.0 38.0 34.0 38.0 22-23 36.63690837440018 38.0 37.0 38.0 34.0 38.0 24-25 36.901229173241404 38.0 37.0 38.0 35.0 38.0 26-27 36.79496516398417 38.0 37.0 38.0 34.5 38.0 28-29 36.057072803631684 38.0 37.0 38.0 33.0 38.0 30-31 36.51179407504512 38.0 37.0 38.0 34.0 38.0 32-33 36.64390389952985 38.0 37.0 38.0 34.0 38.0 34-35 36.78817193859798 38.0 37.0 38.0 35.0 38.0 36-37 36.692536757863394 38.0 37.0 38.0 34.5 38.0 38-39 36.46259073143496 38.0 37.0 38.0 34.0 38.0 40-41 36.521759360409135 38.0 37.0 38.0 34.0 38.0 42-43 36.77409592244637 38.0 37.0 38.0 34.5 38.0 44-45 36.39838888484289 38.0 37.0 38.0 34.0 38.0 46-47 36.596719507359666 38.0 37.0 38.0 34.0 38.0 48-49 36.10128338957266 38.0 37.0 38.0 33.0 38.0 50-51 36.38036802369335 38.0 37.0 38.0 34.0 38.0 52-53 36.303040969744046 38.0 37.0 38.0 34.0 38.0 54-55 36.27705759069097 38.0 37.0 38.0 34.0 38.0 56-57 36.11529466980636 38.0 37.0 38.0 34.0 38.0 58-59 36.32841744956667 38.0 37.0 38.0 34.0 38.0 60-61 35.84628860890604 38.0 37.0 38.0 31.5 38.0 62-63 35.55602084496557 38.0 36.0 38.0 31.0 38.0 64-65 36.03452447422296 38.0 37.0 38.0 33.5 38.0 66-67 35.8060107299784 38.0 36.5 38.0 32.5 38.0 68-69 35.97731815276058 38.0 37.0 38.0 32.0 38.0 70-71 35.72288981137572 38.0 37.0 38.0 31.5 38.0 72-73 35.302527128395596 38.0 37.0 38.0 28.5 38.0 74-75 35.24518324310765 38.0 37.0 38.0 28.5 38.0 76 34.77979268322288 38.0 36.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 7.0 23 10.0 24 30.0 25 77.0 26 183.0 27 291.0 28 578.0 29 912.0 30 1525.0 31 2384.0 32 3729.0 33 5912.0 34 9139.0 35 14569.0 36 24032.0 37 60200.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.90309315070711 18.491714630335704 11.268426548801514 29.336765670155668 2 21.17430955097549 20.28742747554196 34.098835562676506 24.439427410806044 3 19.33580948219358 21.548968675907716 31.877584379223006 27.237637462675696 4 13.817072479952094 20.12558768075482 35.9777955801552 30.07954425913788 5 13.335599090460354 34.072941195510566 37.66902143568082 14.922438278348263 6 28.785635099814694 38.96697658987369 18.283850816077166 13.963537494234457 7 28.21029462934641 28.713616391134416 21.53359389540294 21.542495084116233 8 24.865066071096223 37.184311250293334 18.442453814968562 19.50816886364188 9 23.94500683773133 17.188195405368226 20.326269026290873 38.540528730609566 10-11 24.316833766254785 26.426820090792123 27.279715809320354 21.976630333632738 12-13 24.18412513452933 22.582720365110575 27.330290745191334 25.90286375516876 14-15 22.131187337654456 23.482954223614044 22.986915252591462 31.398943186140038 16-17 24.285679605758258 28.391555199508005 23.92032626902629 23.402438925707443 18-19 24.17724694325088 26.331739211354684 25.21383082886251 24.277183016531936 20-21 21.73387064145203 25.842578431610548 25.269260958577107 27.154289968360317 22-23 22.158295503281302 28.05614222481166 25.323477289830798 24.46208498207624 24-25 24.281020893686577 27.989205198336276 25.303452070756933 22.426321837220218 26-27 23.945816036705263 28.628245899384197 25.521326438958074 21.904611624952462 28-29 23.666642390697447 26.358847376981526 26.407399315417667 23.56711091690336 30-31 24.382783482630543 27.98250511818351 26.091407116095777 21.54330428309017 32-33 21.757337411696163 28.45103132409228 25.713915794754772 24.077715469456784 34-35 23.727736913229595 26.07158174123435 26.157761431958505 24.04291991357755 36-37 22.686297833774347 27.562530850710882 27.6818876993664 22.069283616148375 38-39 21.742367230678354 26.16059362836728 28.40490698257795 23.692132158376424 40-41 21.420306039051944 24.964192945403347 29.08787091657968 24.527630098965034 42-43 24.016815290747545 25.119762417258734 28.6426386573662 22.220783634627523 44-45 21.33817234319747 27.44115100462053 29.073709934535803 22.1469667176462 46-47 23.614853656365565 24.320475161637496 27.484443149726083 24.580228032270853 48-49 22.959807086964616 24.770794390632712 27.24492025344112 25.024478268961552 50-51 21.106304454273587 24.685667574490815 29.181218157022553 25.026809814213046 52-53 20.586045005666183 24.535777885705034 31.788084830824026 23.09009227780476 54-55 19.907379295548296 24.87764594440329 30.192406559553735 25.02256820049468 56-57 22.254248678233974 24.861346136718783 27.771255536033813 25.113149649013433 58-59 20.399085260963716 24.855807176249165 31.083722906927324 23.661384655859795 60-61 21.974526159861096 27.100863293629114 27.752886751903254 23.17172379460654 62-63 19.605883019539913 30.22494374382801 26.501513655275126 23.667659581356947 64-65 19.61872157205523 30.764094595250814 25.552372165298888 24.06481166739507 66-67 19.520378840004856 30.292224875541347 25.85340186991541 24.33399441453839 68-69 19.736341639084237 30.615688400812502 25.38338903770363 24.26458092239963 70-71 20.10026867797488 30.439515084811603 24.787566360222712 24.672649876990807 72-73 20.24783689062639 28.88489587127375 24.893766845543063 25.973500392556797 74-75 20.579713663696474 28.645770105453987 24.62386999134031 26.15064623950923 76 20.72799663354158 28.017673906710254 24.919884763538665 26.3344446962095 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 2.0 14 3.0 15 5.0 16 10.5 17 14.0 18 21.5 19 50.5 20 82.5 21 93.0 22 119.5 23 174.0 24 264.0 25 326.0 26 389.5 27 558.0 28 786.5 29 910.0 30 1035.5 31 1310.0 32 1783.0 33 2107.0 34 2434.0 35 2988.0 36 3628.0 37 4041.0 38 4320.0 39 5255.5 40 6318.0 41 7342.5 42 7961.0 43 8612.0 44 9410.5 45 9017.0 46 8476.0 47 8161.5 48 7299.5 49 6564.5 50 6377.0 51 5773.5 52 4701.0 53 3986.0 54 3740.0 55 3440.5 56 2812.5 57 2188.5 58 1893.0 59 1736.0 60 1449.5 61 1201.0 62 1082.0 63 1064.0 64 922.0 65 767.5 66 700.5 67 664.0 68 634.5 69 589.5 70 554.0 71 534.0 72 485.5 73 438.0 74 394.0 75 349.0 76 334.0 77 292.0 78 262.5 79 260.0 80 231.5 81 185.5 82 149.5 83 131.0 84 118.0 85 87.0 86 52.0 87 35.0 88 29.5 89 24.5 90 18.5 91 7.5 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03884155074891365 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 8.091989739357011E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 8.091989739357011E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.019016175887488974 52-53 0.03155875998349234 54-55 0.052193333818852716 56-57 0.05664392817549907 58-59 0.037627752288010095 60-61 0.032772558444395895 62-63 0.02994036203562094 64-65 0.01699317845264972 66-67 0.03560475485317085 68-69 0.00809198973935701 70-71 0.008901188713292712 72-73 0.02427596921807103 74-75 0.014565581530842621 76 0.005664392817549907 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 123579.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.61382597366867 #Duplication Level Percentage of deduplicated Percentage of total 1 51.10836077530002 18.712726272263087 2 18.29513558909983 13.397098212479467 3 11.494684730479369 12.625931590318743 4 6.643534377969811 9.72980846260287 5 3.684222158375141 6.744673447754068 6 2.254293102305125 4.952297720486491 7 1.3790969567043119 3.5345811181511424 8 0.9326585187968263 2.7318557360069264 9 0.7359603951643203 2.425169324885296 >10 3.427851570269852 19.949991503410775 >50 0.03094127787477623 0.7501274488383949 >100 0.008840365107078923 0.6400763883831395 >500 0.002210091276769731 0.5227425371624629 >1k 0.002210091276769731 3.282920237257139 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 4057 3.282920237257139 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 646 0.5227425371624629 No Hit ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT 297 0.2403320952589032 TruSeq Adapter, Index 2 (95% over 21bp) CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 221 0.17883297323978992 No Hit TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 160 0.12947183582971217 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0016183979478714022 0.0 2 0.0 0.0 0.0 0.0016183979478714022 0.0 3 0.0 0.0 0.0 0.0016183979478714022 0.0 4 0.0 0.0 0.0 0.004855193843614206 0.0 5 0.0 0.0 0.0 0.005664392817549907 0.0 6 0.0 0.0 0.0 0.005664392817549907 0.0 7 0.0 0.0 0.0 0.005664392817549907 0.0 8 0.0 0.0 0.0 0.005664392817549907 0.0 9 0.0 0.0 0.0 0.005664392817549907 0.0 10 0.0 0.0 0.0 0.00728279076542131 0.0 11 0.0 0.0 0.0 0.00809198973935701 0.0 12 0.0 0.0 0.0 0.00809198973935701 0.0 13 0.0 0.0 0.0 0.00809198973935701 0.0 14 0.0 0.0 0.0 0.00809198973935701 0.0 15 0.0 0.0 0.0 0.00809198973935701 0.0 16 0.0 0.0 0.0 0.00809198973935701 0.0 17 0.0 0.0 0.0 0.008901188713292712 0.0 18 0.0 0.0 0.0 0.008901188713292712 0.0 19 0.0 0.0 0.0 0.011328785635099814 0.0 20 0.0 0.0 0.0 0.011328785635099814 0.0 21 0.0 0.0 0.0 0.012947183582971217 0.0 22 0.0 0.0 0.0 0.013756382556906917 0.0 23 0.0 0.0 0.0 0.013756382556906917 0.0 24 0.0 0.0 0.0 0.013756382556906917 0.0 25 0.0 0.0 0.0 0.01618397947871402 0.0 26 0.0 0.0 0.0 0.017802377426585424 0.0 27 0.0 0.0 0.0 0.02508516819200673 0.0 28 0.0 0.0 0.0 0.02832196408774954 0.0 29 0.0 0.0 0.0 0.042887545618592156 0.0 30 0.0 0.0 0.0 0.05826232612337048 0.0 31 0.0 0.0 0.0 0.078492300471763 0.0 32 0.0 0.0 0.0 0.09143948405473422 0.0 33 0.0 0.0 0.0 0.11652465224674095 0.0 34 0.0 0.0 0.0 0.1521294070999118 0.0 35 0.0 0.0 0.0 0.20877333527541087 0.0 36 0.0 0.0 0.0 0.3074956100955664 0.0 37 0.0 0.0 0.0 0.49118377717897055 0.0 38 0.0 0.0 0.0 0.7064307042458671 0.0 39 0.0 0.0 0.0 1.0114987174196264 0.0 40 0.0 0.0 0.0 1.369973862873142 0.0 41 0.0 0.0 0.0 1.7753825488149282 0.0 42 0.0 0.0 0.0 2.225297178323178 0.0 43 0.0 0.0 0.0 2.6841129965447204 0.0 44 0.0 0.0 0.0 3.1890531562805977 0.0 45 0.0 0.0 0.0 3.7482096472701674 0.0 46 0.0 0.0 0.0 4.312221332103351 0.0 47 0.0 0.0 0.0 4.929640149216291 0.0 48 0.0 0.0 0.0 5.524401395059031 0.0 49 0.0 0.0 0.0 6.028532355820973 0.0 50 0.0 0.0 0.0 6.640286780116363 0.0 51 0.0 0.0 0.0 7.191351281366575 0.0 52 0.0 0.0 0.0 7.787730925157187 0.0 53 0.0 0.0 0.0 8.38006457407812 0.0 54 0.0 0.0 0.0 8.952977447624596 0.0 55 0.0 0.0 0.0 9.495140760161517 0.0 56 0.0 0.0 0.0 10.046205261411728 0.0 57 0.0 0.0 0.0 10.602124956505556 0.0 58 0.0 0.0 0.0 11.164518243390868 0.0 59 0.0 0.0 0.0 11.747950703598509 0.0 60 0.0 0.0 0.0 12.354040735076348 0.0 61 0.0 0.0 0.0 12.949611179893024 0.0 62 0.0 0.0 0.0 13.571075991875642 0.0 63 0.0 0.0 0.0 14.133469278760954 0.0 64 0.0 0.0 0.0 14.76869047330048 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGATTC 20 7.870819E-5 70.05349 67 TTACGCG 15 0.0022134734 70.05349 54 TAAACGA 15 0.0022241697 69.96843 12 ATAAACG 15 0.0022241697 69.96843 11 TCACGTG 15 0.0022241697 69.96843 3 CGTTAAT 25 2.387981E-4 55.974747 24 CACAGCG 25 2.387981E-4 55.974747 2 TCTAACT 20 0.006916492 52.540115 57 GCTAGCT 20 0.006916492 52.540115 56 GCCGTCC 20 0.006916492 52.540115 46 CGCATCT 20 0.006949818 52.476326 15 CCATATG 20 0.006949818 52.476326 9 AGCGCTA 20 0.006949818 52.476326 5 GCGCTAA 20 0.006949818 52.476326 6 CTGGATA 20 0.006949818 52.476326 39 TATGCCG 810 0.0 47.941334 43 CGTATGC 805 0.0 47.804523 41 TCGTATG 800 0.0 47.665993 40 GTATGCC 815 0.0 47.647213 42 GCCGTCT 770 0.0 47.308846 46 >>END_MODULE