FastQCFastQC Report
Wed 25 May 2016
SRR1779788_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779788_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21268
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT150.002194892670.0000142
TGCCGCT150.002194892670.0000113
GGTTCAA150.002194892670.0000114
GCCGCTG150.002194892670.0000114
GGGTTCA252.3378496E-455.99999613
CATCTGC252.3378496E-455.9999969
CTCTTCC252.3378496E-455.99999616
TCTGCCG252.3378496E-455.99999611
CCTCACG252.3378496E-455.99999611
ATCTGCC252.3378496E-455.99999610
TCTCGGT200.006858977552.49999643
CTGTGTA200.006858977552.49999634
AGCATTA200.006858977552.49999659
TTTATAC200.006858977552.4999963
TGCAGAA200.006858977552.49999655
CAGTGCA200.006858977552.49999652
CATACCT200.006858977552.4999967
TAGACCC200.006858977552.49999649
CTTCCGA200.006858977552.49999618
CCGAAGA200.006858977552.49999621
Produced by FastQC (version 0.11.5)