##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779788_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21268 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.093285687417715 31.0 21.0 34.0 12.0 34.0 2 26.398203874365244 32.0 21.0 34.0 12.0 34.0 3 25.969625728794433 32.0 21.0 34.0 11.0 34.0 4 26.57617077299229 32.0 21.0 34.0 12.0 34.0 5 26.04908783148392 32.0 12.0 34.0 11.0 34.0 6 28.873659958623282 34.0 21.0 38.0 11.0 38.0 7 28.496097423359036 34.0 21.0 38.0 12.0 38.0 8 27.939580590558585 34.0 11.0 38.0 11.0 38.0 9 28.953263118299795 35.0 21.0 38.0 11.0 38.0 10-11 27.82544197855934 33.0 16.5 38.0 11.0 38.0 12-13 28.37932574760203 34.0 21.0 38.0 11.0 38.0 14-15 27.344249576829036 32.5 11.5 38.0 11.0 38.0 16-17 27.634380289637015 32.5 16.0 38.0 11.0 38.0 18-19 27.913790671431258 34.0 11.5 38.0 11.0 38.0 20-21 27.527694188452134 32.5 16.0 38.0 11.0 38.0 22-23 27.94945457965018 34.0 16.0 38.0 11.0 38.0 24-25 28.16287380101561 34.0 21.0 38.0 11.0 38.0 26-27 27.30538837690427 32.5 11.0 38.0 11.0 38.0 28-29 27.933115478653377 34.0 11.0 38.0 11.0 38.0 30-31 28.129725409065262 34.5 11.0 38.0 11.0 38.0 32-33 28.259921008087268 35.0 11.0 38.0 11.0 38.0 34-35 28.421172653752116 34.5 16.0 38.0 11.0 38.0 36-37 28.08475173970284 34.0 11.0 38.0 11.0 38.0 38-39 27.968732367876623 34.0 11.0 38.0 11.0 38.0 40-41 27.90398721083318 34.0 11.0 38.0 11.0 38.0 42-43 28.144089712243748 34.0 11.0 38.0 11.0 38.0 44-45 28.313217039684034 34.0 16.0 38.0 11.0 38.0 46-47 28.11973387248448 34.0 11.0 38.0 11.0 38.0 48-49 27.946703968403234 34.0 11.0 38.0 11.0 38.0 50-51 27.488339289072783 33.5 11.0 38.0 11.0 38.0 52-53 27.93497272898251 34.0 11.0 38.0 11.0 38.0 54-55 27.921337220236975 34.0 11.0 38.0 11.0 38.0 56-57 27.970025390257664 34.0 11.0 38.0 11.0 38.0 58-59 28.03902576640963 34.0 11.0 38.0 11.0 38.0 60-61 28.09521346624036 34.0 11.0 38.0 11.0 38.0 62-63 27.95248730487117 34.0 11.0 38.0 11.0 38.0 64-65 27.953827346247884 34.0 11.0 38.0 11.0 38.0 66-67 28.044621026894866 34.0 16.0 38.0 11.0 38.0 68-69 27.6673641151025 33.5 15.0 38.0 11.0 38.0 70-71 27.6667293586609 34.0 14.5 38.0 11.0 38.0 72-73 27.609436712431823 34.0 11.0 38.0 11.0 38.0 74-75 27.66792834305059 34.0 11.0 38.0 11.0 38.0 76 27.075371450065827 32.0 11.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 8.0 13 112.0 14 509.0 15 1014.0 16 1388.0 17 1474.0 18 1394.0 19 1203.0 20 868.0 21 596.0 22 432.0 23 300.0 24 227.0 25 196.0 26 175.0 27 168.0 28 155.0 29 215.0 30 259.0 31 328.0 32 385.0 33 532.0 34 809.0 35 1233.0 36 2292.0 37 4996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.979499717886025 22.31521534700019 9.892796689862704 40.81248824525108 2 14.354899379349256 22.14594696257288 37.97724280609366 25.521910851984202 3 12.63400413767162 29.739514763964642 33.09667105510626 24.529810043257477 4 10.466428437088583 27.75531314651119 25.07993229264623 36.698326123754 5 10.739138611999248 30.101561030656388 29.60315967650931 29.556140680835057 6 20.335715629114162 44.183750235094976 13.80007523039308 21.68045890539778 7 18.60071468873425 29.885273650554822 21.990784276847847 29.52322738386308 8 16.047583223622343 38.86590182433704 21.045702463795372 24.04081248824525 9 19.284303583184425 20.77024358130349 18.884604533057463 41.06084830245462 10-11 17.559656753262022 30.72528505936288 24.215352063006932 27.499706124368167 12-13 17.27477901072033 23.401354147075416 27.51786721835622 31.805999623848034 14-15 24.887154410381797 27.586044762083883 20.660146699266505 26.866654128267818 16-17 26.431728418280986 25.801673876246 20.140586797066014 27.626010908406997 18-19 19.856588691665685 25.44727871164923 23.829787234042556 30.866345362642527 20-21 24.228888470942263 24.447526800827536 22.371638141809292 28.951946586420913 22-23 26.65036674816626 24.134850479593755 20.55200300921572 28.66277976302426 24-25 19.91301281297755 30.682966968378985 20.420829904784295 28.983190313859176 26-27 22.632593567801393 30.94555200300921 22.122437464735754 24.29941696445364 28-29 20.876924885388505 28.53179734336429 24.892441518749266 25.69883625249794 30-31 22.5032913296972 27.172277600150462 24.84953921384239 25.47489185630995 32-33 18.54429189392515 29.43154034229829 24.952981004325746 27.071186759450818 34-35 17.73086326876058 32.69936054165883 23.742241865713748 25.827534323866843 36-37 23.245314961555643 26.367890145547747 24.11766089021609 26.269134002680524 38-39 24.322290927044882 24.296428655396987 25.85286718547951 25.528413232078623 40-41 20.279769601504643 29.140707652521453 24.452803573527685 26.126719172446222 42-43 16.685082872928177 27.868813917949925 25.8634066063242 29.582696602797697 44-45 16.69723045093337 24.35228287957869 29.64216861804674 29.3083180514412 46-47 18.575290936875515 27.50675913953215 26.674503350182206 27.243446573410136 48-49 19.348771599858942 28.139179499235922 25.092276948395437 27.4197719525097 50-51 25.2110126254908 27.524510380175393 21.171796017210166 26.092680977123646 52-53 15.111685868798494 30.90289207618152 24.60380907594639 29.381612979073594 54-55 17.804579865519347 26.484694597263363 24.469835895989092 31.240889641228193 56-57 19.616279889962616 28.207660294843762 22.428346382638544 29.747713432555077 58-59 18.101664628985233 29.079281482178125 22.893350888742596 29.925703000094046 60-61 16.412716328066214 25.8864747930775 24.266365688487586 33.4344431903687 62-63 18.66080455175981 27.324665553805282 23.48999600310347 30.524533891331433 64-65 19.40603837471783 26.274454477050412 22.690933032355154 31.6285741158766 66-67 16.41703308330786 31.99228761550942 20.618871828634582 30.971807472548146 68-69 17.780651228400142 33.89679087810038 18.911484659692018 29.411073233807457 70-71 18.74412262554072 32.751081436900506 18.52783524543916 29.976960692119615 72-73 20.147639646417154 31.509779951100242 19.24017302990408 29.10240737257852 74-75 17.92297564186965 31.385780118499014 20.394056240007526 30.297187999623816 76 16.729358660899003 30.275531314651122 20.923453075042318 32.07165694940756 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 3.0 16 8.0 17 11.0 18 13.5 19 18.5 20 32.0 21 43.0 22 38.0 23 49.5 24 69.0 25 72.0 26 96.5 27 140.0 28 157.0 29 155.0 30 175.5 31 207.0 32 284.0 33 350.0 34 367.0 35 457.0 36 604.0 37 678.0 38 669.0 39 713.0 40 757.0 41 834.5 42 921.0 43 962.5 44 1048.5 45 1107.5 46 1122.0 47 1121.5 48 1149.0 49 1166.5 50 1156.0 51 1108.5 52 1029.0 53 949.5 54 902.0 55 868.5 56 790.0 57 732.5 58 720.0 59 645.0 60 520.5 61 436.0 62 401.0 63 344.0 64 275.5 65 234.5 66 195.5 67 186.0 68 176.0 69 146.0 70 111.0 71 96.0 72 89.5 73 67.0 74 51.5 75 52.0 76 50.5 77 42.0 78 35.5 79 36.0 80 25.0 81 18.0 82 17.0 83 12.0 84 14.5 85 14.5 86 9.5 87 7.0 88 5.5 89 3.5 90 4.0 91 2.5 92 0.0 93 1.0 94 1.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.00940379913485048 10-11 0.00235094978371262 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.00235094978371262 20-21 0.0 22-23 0.0 24-25 0.00235094978371262 26-27 0.0 28-29 0.00235094978371262 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.016456648485988337 38-39 0.00705284935113786 40-41 0.00235094978371262 42-43 0.00235094978371262 44-45 0.00470189956742524 46-47 0.00235094978371262 48-49 0.00235094978371262 50-51 0.00705284935113786 52-53 0.01410569870227572 54-55 0.00470189956742524 56-57 0.0117547489185631 58-59 0.00940379913485048 60-61 0.01880759826970096 62-63 0.00705284935113786 64-65 0.01880759826970096 66-67 0.016456648485988337 68-69 0.00235094978371262 70-71 0.0 72-73 0.0 74-75 0.00940379913485048 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 21268.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.69362422418658 #Duplication Level Percentage of deduplicated Percentage of total 1 90.62262718299165 78.56403987210832 2 5.640525002711791 9.7799511002445 3 2.2562100010847166 5.8679706601467 4 0.9653975485410564 3.3477524920067703 5 0.3199913222692266 1.3870603723904458 6 0.16270745200130166 0.8463419221365431 7 0.02169432693350689 0.1316531878879067 8 0.010847163466753445 0.07523039307880384 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0047018995674252394 0.0 2 0.0 0.0 0.0 0.0047018995674252394 0.0 3 0.0 0.0 0.0 0.0047018995674252394 0.0 4 0.0 0.0 0.0 0.01410569870227572 0.0 5 0.0 0.0 0.0 0.018807598269700958 0.0 6 0.0 0.0 0.0 0.018807598269700958 0.0 7 0.0 0.0 0.0 0.018807598269700958 0.0 8 0.0 0.0 0.0 0.018807598269700958 0.0 9 0.0 0.0 0.0 0.018807598269700958 0.0 10 0.0 0.0 0.0 0.018807598269700958 0.0 11 0.0 0.0 0.0 0.0235094978371262 0.0 12 0.0 0.0 0.0 0.0235094978371262 0.0 13 0.0 0.0 0.0 0.02821139740455144 0.0 14 0.0 0.0 0.0 0.02821139740455144 0.0 15 0.0 0.0 0.0 0.02821139740455144 0.0 16 0.0 0.0 0.0 0.02821139740455144 0.0 17 0.0 0.0 0.0 0.02821139740455144 0.0 18 0.0 0.0 0.0 0.02821139740455144 0.0 19 0.0 0.0 0.0 0.02821139740455144 0.0 20 0.0 0.0 0.0 0.02821139740455144 0.0 21 0.0 0.0 0.0 0.02821139740455144 0.0 22 0.0 0.0 0.0 0.08463419221365431 0.0 23 0.0 0.0 0.0 0.12695128832048147 0.0 24 0.0 0.0 0.0 0.13635508745533195 0.0 25 0.0 0.0 0.0 0.13635508745533195 0.0 26 0.0 0.0 0.0 0.13635508745533195 0.0 27 0.0 0.0 0.0 0.1410569870227572 0.0 28 0.0 0.0 0.0 0.16926838442730863 0.0 29 0.0 0.0 0.0 0.1786721835621591 0.0 30 0.0 0.0 0.0 0.2021816813992853 0.0 31 0.0 0.0 0.0 0.21158548053413578 0.0 32 0.0 0.0 0.0 0.22569117923641152 0.0 33 0.0 0.0 0.0 0.25860447620838817 0.0 34 0.0 0.0 0.0 0.2962196727477901 0.0 35 0.0 0.0 0.0 0.36674816625916873 0.0 36 0.0 0.0 0.0 0.47959375587737446 0.0 37 0.0 0.0 0.0 0.6206507429001317 0.0 38 0.0 0.0 0.0 0.8369381230016927 0.0 39 0.0 0.0 0.0 1.137859695316908 0.0 40 0.0 0.0 0.0 1.391762271957871 0.0 41 0.0 0.0 0.0 1.66917434643596 0.0 42 0.0 0.0 0.0 1.9794997178860259 0.0 43 0.0 0.0 0.0 2.4214782772239984 0.0 44 0.0 0.0 0.0 2.764716945646041 0.0 45 0.0 0.0 0.0 3.2019936054165883 0.0 46 0.0 0.0 0.0 3.6533759638894114 0.0 47 0.0 0.0 0.0 3.9307880383675005 0.0 48 0.0 0.0 0.0 4.269324807222118 0.0 49 0.0 0.0 0.0 4.5185254842956555 0.0 50 0.0 0.0 0.0 4.955802144066203 0.0 51 0.0 0.0 0.0 5.209704720707165 0.0 52 0.0 0.0 0.0 5.567049087831484 0.0 53 0.0 0.0 0.0 5.905585856686101 0.0 54 0.0 0.0 0.0 6.2723340229452695 0.0 55 0.0 0.0 0.0 6.577957494827911 0.0 56 0.0 0.0 0.0 6.907090464547677 0.0 57 0.0 0.0 0.0 7.269136731239421 0.0 58 0.0 0.0 0.0 7.602971600526613 0.0 59 0.0 0.0 0.0 7.880383675004702 0.0 60 0.0 0.0 0.0 8.294150836938122 0.0 61 0.0 0.0 0.0 8.585668610118487 0.0 62 0.0 0.0 0.0 8.924205378973106 0.0 63 0.0 0.0 0.0 9.267444047395148 0.0 64 0.0 0.0 0.0 9.540154222305812 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGT 15 0.0021948926 70.00001 42 TGCCGCT 15 0.0021948926 70.00001 13 GGTTCAA 15 0.0021948926 70.00001 14 GCCGCTG 15 0.0021948926 70.00001 14 GGGTTCA 25 2.3378496E-4 55.999996 13 CATCTGC 25 2.3378496E-4 55.999996 9 CTCTTCC 25 2.3378496E-4 55.999996 16 TCTGCCG 25 2.3378496E-4 55.999996 11 CCTCACG 25 2.3378496E-4 55.999996 11 ATCTGCC 25 2.3378496E-4 55.999996 10 TCTCGGT 20 0.0068589775 52.499996 43 CTGTGTA 20 0.0068589775 52.499996 34 AGCATTA 20 0.0068589775 52.499996 59 TTTATAC 20 0.0068589775 52.499996 3 TGCAGAA 20 0.0068589775 52.499996 55 CAGTGCA 20 0.0068589775 52.499996 52 CATACCT 20 0.0068589775 52.499996 7 TAGACCC 20 0.0068589775 52.499996 49 CTTCCGA 20 0.0068589775 52.499996 18 CCGAAGA 20 0.0068589775 52.499996 21 >>END_MODULE