##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779787_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 40682 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.928567917014895 34.0 23.0 34.0 12.0 34.0 2 29.576471166609313 34.0 31.0 34.0 12.0 34.0 3 29.12349442013667 34.0 27.0 34.0 11.0 34.0 4 29.363698933189127 34.0 27.0 34.0 12.0 34.0 5 29.702227029152944 34.0 31.0 34.0 11.0 34.0 6 32.4909050685807 38.0 31.0 38.0 12.0 38.0 7 32.63548989725186 38.0 32.0 38.0 12.0 38.0 8 32.06521311636596 37.0 28.0 38.0 11.0 38.0 9 32.66887075365026 38.0 34.0 38.0 12.0 38.0 10-11 31.396637333464433 37.0 27.0 38.0 11.5 38.0 12-13 32.14324516985399 37.0 29.5 38.0 11.0 38.0 14-15 30.97065041050096 37.0 25.5 38.0 11.0 38.0 16-17 31.519922815987414 37.0 28.5 38.0 11.0 38.0 18-19 32.19080920308736 37.5 31.0 38.0 11.0 38.0 20-21 31.21435770119463 37.0 27.0 38.0 11.0 38.0 22-23 31.96236664864068 37.5 29.0 38.0 11.0 38.0 24-25 32.22540681382429 38.0 31.0 38.0 11.0 38.0 26-27 31.23619782704882 37.0 26.0 38.0 11.0 38.0 28-29 32.318617570424266 37.5 32.0 38.0 11.0 38.0 30-31 32.56661422742245 38.0 33.5 38.0 11.0 38.0 32-33 32.72137554692493 38.0 34.0 38.0 11.0 38.0 34-35 32.74147042918244 38.0 34.0 38.0 11.0 38.0 36-37 32.37004080428691 38.0 32.0 38.0 11.0 38.0 38-39 32.29882994936335 38.0 32.5 38.0 11.0 38.0 40-41 32.277456860528 38.0 31.5 38.0 11.0 38.0 42-43 32.57149353522443 38.0 32.5 38.0 11.0 38.0 44-45 32.60857381642987 38.0 33.5 38.0 11.0 38.0 46-47 32.513310555036625 38.0 33.0 38.0 11.0 38.0 48-49 32.34194484046999 38.0 32.5 38.0 11.0 38.0 50-51 31.80783884764761 37.5 28.5 38.0 11.0 38.0 52-53 32.33614374907822 38.0 31.0 38.0 11.0 38.0 54-55 32.41857578290153 38.0 32.0 38.0 11.0 38.0 56-57 32.37742736345312 38.0 32.0 38.0 11.0 38.0 58-59 32.50319551644462 38.0 33.5 38.0 11.0 38.0 60-61 32.49916424954526 38.0 32.5 38.0 11.0 38.0 62-63 32.43327515854678 38.0 32.0 38.0 11.0 38.0 64-65 32.49972961014699 38.0 32.5 38.0 11.0 38.0 66-67 32.39544516002164 38.0 31.0 38.0 11.0 38.0 68-69 31.850339216361043 37.0 28.5 38.0 11.0 38.0 70-71 31.873076544909296 37.0 29.0 38.0 11.0 38.0 72-73 32.03370040804287 37.5 31.0 38.0 11.0 38.0 74-75 32.185044983039184 37.5 31.0 38.0 11.0 38.0 76 31.360970453763336 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 14.0 13 156.0 14 573.0 15 1098.0 16 1323.0 17 1422.0 18 1310.0 19 976.0 20 681.0 21 543.0 22 362.0 23 302.0 24 245.0 25 258.0 26 284.0 27 271.0 28 345.0 29 415.0 30 541.0 31 650.0 32 924.0 33 1254.0 34 1915.0 35 3283.0 36 6468.0 37 15069.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.57996165380266 21.097782803205348 10.877046359569341 34.44520918342264 2 16.3635022860233 22.235878275404357 35.81928125460892 25.581338183963425 3 21.43945725382233 21.29934614817364 31.969912983629122 25.29128361437491 4 13.0696622584927 22.112973796765154 34.40342166068531 30.413942284056834 5 13.56373826262229 32.38041394228406 36.903298756206674 17.152549038886978 6 24.748045818789638 41.22707831473379 17.327073398554642 16.69780246792193 7 22.585482166121775 34.32314839851528 20.085543619871686 23.005825815491264 8 19.871196106386115 38.02910378054176 17.48439113121282 24.6153089818593 9 23.28851306506723 18.12393992281409 20.464098719303852 38.12344829281483 10-11 21.81143299615295 27.58815648775212 24.002900652646847 26.59750986344809 12-13 21.761466987857037 23.399783688117594 26.374072071186273 28.464677252839092 14-15 24.209724202349932 25.570276780885898 22.772970847057667 27.447028169706506 16-17 25.469495108401752 26.622339118037463 22.64637923405929 25.2617865395015 18-19 21.955925912269706 26.512050932241927 24.938854270368598 26.593168885119773 20-21 23.73039673565705 25.46334988446979 24.845140356914605 25.961113022958553 22-23 25.255641315569537 25.894744604493386 23.1527456860528 25.696868393884277 24-25 21.879724198960215 28.805476690879146 23.220628541228812 26.094170568931823 26-27 22.943808072366156 28.860429674057325 24.599331399636203 23.596430853940316 28-29 22.23000626820545 27.74971424357509 25.58288165382299 24.43739783439647 30-31 22.737328548252297 26.817757239073792 25.902118873211737 24.54279533946217 32-33 20.559461186765645 29.01037313799715 25.227373285482525 25.20279238975468 34-35 20.155600894766597 30.30776037953836 24.508984538236522 25.02765418745852 36-37 23.140272383106346 26.91012340823049 24.471458773784356 25.4781454348788 38-39 23.400646501395016 25.68798318604737 26.11201927213284 24.799351040424774 40-41 21.374317880143554 27.832948232633598 25.376087704635957 25.416646182586895 42-43 19.97074873408387 27.03038198711961 26.32859741408977 26.670271864706752 44-45 19.795481920306777 25.34967183697549 28.355989282466016 26.498856960251715 46-47 20.23868049751733 26.65183619291087 27.544122707831477 25.565360601740327 48-49 20.364043065729316 27.60926208151025 26.532618848630847 25.49407600412959 50-51 23.087606312374024 27.01809153925569 24.58089572784032 25.313406420529965 52-53 18.54241954913096 28.642721931312536 26.20522654079701 26.609631978759495 54-55 19.381760078662733 26.44911504424779 26.371681415929203 27.797443461160277 56-57 20.58407797539301 27.51385833159208 25.595201514276233 26.306862178738676 58-59 20.549410029498524 26.889134709931174 25.581366764995085 26.98008849557522 60-61 19.17616255485489 26.724932699044878 25.870610072402307 28.228294673697928 62-63 20.301130776794494 26.680186823992138 25.432645034414946 27.586037364798425 64-65 20.949442552825342 26.23873735449215 24.8976681867909 27.91415190589161 66-67 19.327162997652323 28.613395282520248 23.959831360546726 28.099610359280703 68-69 20.11577601887813 30.02925126591613 23.23754977631385 26.617422938891895 70-71 20.489405633941303 28.76702227029153 23.31743768742933 27.426134408337838 72-73 21.05282564342076 28.230623632654066 23.427398539858903 27.289152184066275 74-75 20.14749262536873 27.860127826941987 24.39282202556539 27.599557522123895 76 19.633244020550134 27.376416508935375 24.269314913596027 28.72102455691846 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 5.0 16 13.5 17 19.0 18 29.5 19 37.0 20 48.5 21 63.0 22 76.0 23 100.5 24 137.5 25 163.0 26 222.5 27 290.5 28 370.0 29 441.0 30 479.0 31 579.5 32 758.0 33 874.0 34 938.5 35 1094.0 36 1260.5 37 1336.0 38 1427.0 39 1576.5 40 1688.5 41 1801.0 42 1860.0 43 1931.5 44 1957.0 45 1990.5 46 2070.0 47 2101.5 48 2034.0 49 1940.0 50 1945.0 51 1865.0 52 1668.5 53 1508.0 54 1464.0 55 1424.5 56 1320.5 57 1192.0 58 1128.0 59 1015.0 60 856.0 61 747.5 62 685.0 63 653.5 64 589.0 65 503.5 66 397.5 67 344.0 68 345.0 69 320.0 70 260.5 71 227.0 72 211.0 73 164.0 74 140.0 75 147.0 76 129.0 77 97.5 78 78.5 79 73.0 80 72.5 81 63.0 82 50.5 83 47.0 84 38.0 85 25.5 86 18.5 87 15.0 88 14.0 89 10.0 90 4.0 91 0.5 92 0.0 93 1.5 94 2.0 95 2.0 96 3.0 97 1.5 98 0.0 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.002458089572784032 8 0.0 9 0.002458089572784032 10-11 0.0036871343591760486 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.001229044786392016 20-21 0.0 22-23 0.0 24-25 0.001229044786392016 26-27 0.0 28-29 0.001229044786392016 30-31 0.0 32-33 0.0 34-35 0.002458089572784032 36-37 0.009832358291136128 38-39 0.0036871343591760486 40-41 0.0 42-43 0.0 44-45 0.002458089572784032 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.01229044786392016 54-55 0.004916179145568064 56-57 0.00614522393196008 58-59 0.004916179145568064 60-61 0.01597758222309621 62-63 0.004916179145568064 64-65 0.013519492650312177 66-67 0.008603313504744114 68-69 0.0 70-71 0.0 72-73 0.002458089572784032 74-75 0.004916179145568064 76 0.002458089572784032 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 40682.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.16926404798191 #Duplication Level Percentage of deduplicated Percentage of total 1 81.67165700452315 63.025416646182585 2 11.129515193986112 17.17712993461482 3 4.484933426769446 10.382970355439753 4 1.831560170733261 5.653606017403274 5 0.5988405427788749 2.31060419841699 6 0.17519271198318148 0.8111695590187306 7 0.0700770847932726 0.37854579420874096 8 0.01911193221634707 0.11798829949363356 9 0.01274128814423138 0.08849122462022516 >10 0.00637064407211569 0.05407797060124871 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002458089572784032 0.0 2 0.0 0.0 0.0 0.002458089572784032 0.0 3 0.0 0.0 0.0 0.002458089572784032 0.0 4 0.0 0.0 0.0 0.002458089572784032 0.0 5 0.0 0.0 0.0 0.007374268718352096 0.0 6 0.0 0.0 0.0 0.007374268718352096 0.0 7 0.0 0.0 0.0 0.007374268718352096 0.0 8 0.0 0.0 0.0 0.007374268718352096 0.0 9 0.0 0.0 0.0 0.007374268718352096 0.0 10 0.0 0.0 0.0 0.007374268718352096 0.0 11 0.0 0.0 0.0 0.007374268718352096 0.0 12 0.0 0.0 0.0 0.007374268718352096 0.0 13 0.0 0.0 0.0 0.007374268718352096 0.0 14 0.0 0.0 0.0 0.007374268718352096 0.0 15 0.0 0.0 0.0 0.009832358291136128 0.0 16 0.0 0.0 0.0 0.009832358291136128 0.0 17 0.0 0.0 0.0 0.009832358291136128 0.0 18 0.0 0.0 0.0 0.02212280615505629 0.0 19 0.0 0.0 0.0 0.02212280615505629 0.0 20 0.0 0.0 0.0 0.027038985300624353 0.0 21 0.0 0.0 0.0 0.03687134359176048 0.0 22 0.0 0.0 0.0 0.06391032889238484 0.0 23 0.0 0.0 0.0 0.06636841846516887 0.0 24 0.0 0.0 0.0 0.076200776756305 0.0 25 0.0 0.0 0.0 0.076200776756305 0.0 26 0.0 0.0 0.0 0.076200776756305 0.0 27 0.0 0.0 0.0 0.076200776756305 0.0 28 0.0 0.0 0.0 0.08111695590187307 0.0 29 0.0 0.0 0.0 0.0909493141930092 0.0 30 0.0 0.0 0.0 0.10569785162971339 0.0 31 0.0 0.0 0.0 0.12044638906641758 0.0 32 0.0 0.0 0.0 0.14011110564868984 0.0 33 0.0 0.0 0.0 0.16223391180374613 0.0 34 0.0 0.0 0.0 0.20156334496829065 0.0 35 0.0 0.0 0.0 0.2433508677056192 0.0 36 0.0 0.0 0.0 0.31217737574357207 0.0 37 0.0 0.0 0.0 0.5161988102846468 0.0 38 0.0 0.0 0.0 0.759549677990266 0.0 39 0.0 0.0 0.0 1.002900545695885 0.0 40 0.0 0.0 0.0 1.3347426380217295 0.0 41 0.0 0.0 0.0 1.6518361929108696 0.0 42 0.0 0.0 0.0 2.0525047932746667 0.0 43 0.0 0.0 0.0 2.509709453812497 0.0 44 0.0 0.0 0.0 2.890713337594022 0.0 45 0.0 0.0 0.0 3.404454058305885 0.0 46 0.0 0.0 0.0 3.9034462415810434 0.0 47 0.0 0.0 0.0 4.331153827245465 0.0 48 0.0 0.0 0.0 4.719531979745342 0.0 49 0.0 0.0 0.0 5.100535863526867 0.0 50 0.0 0.0 0.0 5.493830195172312 0.0 51 0.0 0.0 0.0 5.960867214001278 0.0 52 0.0 0.0 0.0 6.42544614325746 0.0 53 0.0 0.0 0.0 6.976058207561084 0.0 54 0.0 0.0 0.0 7.423430509807777 0.0 55 0.0 0.0 0.0 7.976500663684185 0.0 56 0.0 0.0 0.0 8.39437589105747 0.0 57 0.0 0.0 0.0 8.858954820313652 0.0 58 0.0 0.0 0.0 9.276830047686937 0.0 59 0.0 0.0 0.0 9.692247185487439 0.0 60 0.0 0.0 0.0 10.183865100044246 0.0 61 0.0 0.0 0.0 10.562410894252986 0.0 62 0.0 0.0 0.0 10.960621405044 0.0 63 0.0 0.0 0.0 11.439948871736886 0.0 64 0.0 0.0 0.0 11.855366009537388 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTGAAC 15 0.002209455 70.00001 28 CTCGGTG 30 9.996256E-8 70.00001 44 AGTTGTA 15 0.002209455 70.00001 26 TAGTGTA 15 0.002209455 70.00001 34 TCGGTGG 30 9.996256E-8 70.00001 45 TCTCGGT 35 3.594323E-9 70.0 43 CGACGAA 35 2.904635E-7 60.0 22 GATCTCG 35 2.904635E-7 60.0 41 CGTATCA 25 2.36361E-4 55.999996 56 TGGTCGC 25 2.36361E-4 55.999996 49 GTGTAGA 70 0.0 55.0 36 GGTGGTC 45 2.6178895E-8 54.444447 47 CGGTGGT 45 2.6178895E-8 54.444447 46 ATCTCGG 40 7.30568E-7 52.499996 42 GTCGCCG 20 0.006904135 52.499996 51 GGTCGAC 20 0.006904135 52.499996 50 ATGCTTC 20 0.006904135 52.499996 6 CTAGTGT 20 0.006904135 52.499996 33 ACGTGTA 20 0.006904135 52.499996 34 CAGGCAT 20 0.006904135 52.499996 27 >>END_MODULE