##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779785_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 164885 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.39297692331019 34.0 34.0 34.0 34.0 34.0 2 33.55108105649392 34.0 34.0 34.0 34.0 34.0 3 33.695023804469784 34.0 34.0 34.0 34.0 34.0 4 33.43421778815538 34.0 34.0 34.0 34.0 34.0 5 33.489153046062405 34.0 34.0 34.0 34.0 34.0 6 37.07327531309701 38.0 37.0 38.0 36.0 38.0 7 37.20789034781818 38.0 38.0 38.0 36.0 38.0 8 37.0333019983625 38.0 37.0 38.0 36.0 38.0 9 36.94827910361767 38.0 37.0 38.0 35.0 38.0 10-11 36.874054644145914 38.0 37.0 38.0 35.0 38.0 12-13 37.06864784546805 38.0 37.5 38.0 35.5 38.0 14-15 37.112138763380536 38.0 38.0 38.0 36.0 38.0 16-17 37.013849046305 38.0 37.5 38.0 35.5 38.0 18-19 36.87883070018498 38.0 37.0 38.0 34.5 38.0 20-21 36.88433756860842 38.0 37.0 38.0 34.5 38.0 22-23 36.83015435000152 38.0 37.0 38.0 34.5 38.0 24-25 37.08296085150256 38.0 37.5 38.0 36.0 38.0 26-27 36.96429632774358 38.0 38.0 38.0 35.5 38.0 28-29 36.35577826970312 38.0 37.0 38.0 34.0 38.0 30-31 36.71794887345726 38.0 37.0 38.0 34.5 38.0 32-33 36.801531370349025 38.0 37.0 38.0 34.5 38.0 34-35 36.917824544379414 38.0 37.0 38.0 35.0 38.0 36-37 36.872956909361065 38.0 37.5 38.0 35.5 38.0 38-39 36.45450768717591 38.0 37.0 38.0 34.0 38.0 40-41 36.64475543560663 38.0 37.0 38.0 34.0 38.0 42-43 36.950198623282894 38.0 37.5 38.0 35.5 38.0 44-45 36.658771264820935 38.0 37.0 38.0 34.5 38.0 46-47 36.83235588440428 38.0 37.0 38.0 35.0 38.0 48-49 36.39979379567578 38.0 37.0 38.0 34.0 38.0 50-51 36.63581587166813 38.0 37.0 38.0 34.0 38.0 52-53 36.545495345240624 38.0 37.0 38.0 34.0 38.0 54-55 36.53053340206811 38.0 37.0 38.0 34.0 38.0 56-57 36.38609333778088 38.0 37.0 38.0 34.0 38.0 58-59 36.53100645904722 38.0 37.0 38.0 34.0 38.0 60-61 36.118258179943595 38.0 37.0 38.0 34.0 38.0 62-63 35.90738696667374 38.0 37.0 38.0 32.0 38.0 64-65 36.300324468569 38.0 37.0 38.0 34.0 38.0 66-67 36.08794917669891 38.0 37.0 38.0 32.5 38.0 68-69 36.208742456863874 38.0 37.0 38.0 34.0 38.0 70-71 35.6557297510386 38.0 37.0 38.0 30.5 38.0 72-73 34.72002607878218 38.0 36.5 38.0 23.5 38.0 74-75 34.57892773751402 38.0 36.5 38.0 23.5 38.0 76 34.2517087667162 38.0 35.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 2.0 22 10.0 23 19.0 24 41.0 25 86.0 26 192.0 27 377.0 28 584.0 29 1063.0 30 1734.0 31 2729.0 32 4481.0 33 6918.0 34 11168.0 35 19580.0 36 29472.0 37 86429.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.48164508573717 18.72201254808684 11.609407424486973 32.18693494168902 2 18.058646935743095 18.57294477969494 39.677350880917004 23.69105740364496 3 17.82393789610941 21.09652181823695 35.473815083239835 25.605725202413804 4 12.771931952573004 23.69772872001698 35.76614003699548 27.76419929041453 5 12.593019377141646 33.418443157352094 40.45850137974952 13.53003608575674 6 26.850835430754767 42.02989962701277 17.700215301573824 13.41904964065864 7 25.158140522182126 27.976468447705976 21.71756072414107 25.14783030597083 8 22.461109257967674 40.835733996421745 18.258179943597053 18.444976802013525 9 22.516905722169998 15.922612730084603 19.59304970130697 41.96743184643842 10-11 23.39539679170331 27.774509506625826 28.18600843011796 20.6440852715529 12-13 22.707644722079024 21.348515632107226 28.522303423598267 27.42153622221548 14-15 21.034660520969158 22.092064165933834 22.235497467932195 34.63777784516481 16-17 25.705794947994054 28.692421991084693 22.784668102010492 22.817114958910757 18-19 25.69882038996877 25.143281681171725 23.919398368559904 25.238499560299605 20-21 21.124723291991387 24.01037086454195 23.581587166813232 31.283318676653426 22-23 21.346696182187586 28.476210692300697 23.889377444885827 26.28771568062589 24-25 25.641593255803375 28.57337801161433 23.551923339347717 22.233105393234574 26-27 25.480789641265122 29.286775631500745 24.007035206355944 21.225399520878188 28-29 21.06589441125633 29.330442429572123 24.500409376231918 25.10325378293962 30-31 20.76295599963611 28.97201079540286 29.12605755526579 21.13897564969524 32-33 24.18443157352094 30.11887072808321 24.889771659035084 20.806926039360764 34-35 22.047790884555905 24.584407314188677 32.94720562816508 20.420596173090335 36-37 21.155047457318737 32.241562300997664 25.449555750977954 21.153834490705645 38-39 20.48700609515723 25.70670467295388 28.863753525184222 24.94253570670467 40-41 20.683809928131726 23.19434757558298 29.844740273523975 26.277102222761318 42-43 25.125695189922553 23.175524462800894 29.328675485040907 22.370104862235646 44-45 20.311429177911876 27.91430390878491 29.9748309427783 21.79943597052491 46-47 24.82609091184765 23.08972920520363 26.48270006368075 25.601479819267976 48-49 24.23234375473815 22.78891348515632 25.89683718955636 27.081905570549168 50-51 20.43109566356705 23.078509514190916 30.184581976112923 26.30581284612912 52-53 19.022095224228305 22.99037808192584 35.08845369831101 22.899072995534848 54-55 18.523788863031612 23.47513706547892 31.29310318671549 26.707970884773975 56-57 23.07825337686137 23.24360732533162 26.750324639862132 26.927814657944875 58-59 19.014639947094764 23.42512877450356 34.094149481565076 23.466081796836608 60-61 23.105810122972947 27.727457487274997 26.500154702031754 22.6665776877203 62-63 18.47114244201037 33.3726654755802 24.788349597022485 23.367842485386948 64-65 18.513845500591426 33.96590943556459 23.897364350489823 23.62288071335416 66-67 18.563112215335984 33.8205270550262 23.597952936965143 24.01840779267268 68-69 18.49529020009826 34.008515851979446 23.238753191928136 24.257440755994153 70-71 18.730229976738475 33.19271280354473 23.428027258748852 24.649029960967948 72-73 19.036165772935725 31.45245432266518 23.11163953121588 26.399740373183217 74-75 19.311771342610005 31.24962088585328 23.432590471799976 26.006017299736744 76 19.50311161792001 31.578372739072947 23.29406912280276 25.624446520204287 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.5 15 8.0 16 16.0 17 19.0 18 24.0 19 31.5 20 71.5 21 109.0 22 135.5 23 237.5 24 398.0 25 483.0 26 533.5 27 639.5 28 890.0 29 1085.0 30 1278.0 31 1627.0 32 2120.5 33 2458.0 34 2830.5 35 3590.5 36 5990.0 37 8002.0 38 9453.0 39 11181.5 40 10772.0 41 9840.0 42 9595.0 43 9396.5 44 9471.5 45 9605.5 46 9466.0 47 9634.5 48 9304.5 49 8379.5 50 7953.0 51 7433.0 52 6282.0 53 5266.5 54 4882.0 55 4676.5 56 4025.0 57 3155.0 58 2731.0 59 2429.5 60 1988.5 61 1665.5 62 1482.0 63 1352.0 64 1163.5 65 1062.0 66 976.5 67 934.0 68 867.5 69 782.5 70 719.0 71 674.0 72 600.0 73 517.5 74 475.5 75 442.0 76 426.0 77 350.0 78 291.0 79 292.0 80 261.0 81 201.0 82 138.5 83 105.0 84 97.5 85 82.5 86 57.0 87 39.0 88 32.0 89 16.5 90 9.0 91 7.0 92 4.0 93 6.0 94 7.5 95 3.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.047912181217211997 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0015162082663674682 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0012129666130939745 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.01576856597022167 52-53 0.032143615246990324 54-55 0.05549322254904934 56-57 0.052764047669587893 58-59 0.037601965005913215 60-61 0.03153713194044334 62-63 0.030020923674075873 64-65 0.01819449919640962 66-67 0.03851168996573369 68-69 0.009703732904751796 70-71 0.012432907784213241 72-73 0.02001394911605058 74-75 0.016375049276768656 76 0.011523182824392759 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 164885.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.70139794402159 #Duplication Level Percentage of deduplicated Percentage of total 1 44.535972502074195 13.673166146101828 2 18.088973173718937 11.107135276101525 3 13.130654656078386 12.093883615853473 4 8.211844652522618 10.084604421263304 5 5.061040654260993 7.769051156866907 6 2.915728339457153 5.371016162780119 7 1.813440796491644 3.8972617278709403 8 1.177353719726601 2.8917124056160355 9 0.8533839042313619 2.3580070958546866 >10 4.152344830310932 20.991600206204325 >50 0.03950851408478527 0.7223216180974619 >100 0.013827979929674845 0.8533220123116111 >500 0.0019754257042392635 0.48943202838341876 >1k 0.0019754257042392635 0.9254935257907027 >5k 0.0 0.0 >10k+ 0.0019754257042392635 6.77199260090366 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT 11166 6.77199260090366 No Hit TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 1526 0.9254935257907027 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 807 0.48943202838341876 No Hit ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT 440 0.2668526548806744 RNA PCR Primer, Index 15 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 286 0.17345422567243837 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0012129666130939747 0.0 2 0.0 0.0 0.0 0.0012129666130939747 0.0 3 0.0 0.0 0.0 0.0012129666130939747 0.0 4 0.0 0.0 0.0 0.0036388998392819236 0.0 5 0.0 0.0 0.0 0.004245383145828911 0.0 6 0.0 0.0 0.0 0.004245383145828911 0.0 7 0.0 0.0 0.0 0.004245383145828911 0.0 8 0.0 0.0 0.0 0.004245383145828911 0.0 9 0.0 0.0 0.0 0.00667131637201686 0.0 10 0.0 0.0 0.0 0.007884282985110834 0.0 11 0.0 0.0 0.0 0.007884282985110834 0.0 12 0.0 0.0 0.0 0.008490766291657821 0.0 13 0.0 0.0 0.0 0.009097249598204809 0.0 14 0.0 0.0 0.0 0.009097249598204809 0.0 15 0.0 0.0 0.0 0.01334263274403372 0.0 16 0.0 0.0 0.0 0.013949116050580707 0.0 17 0.0 0.0 0.0 0.018800982502956608 0.0 18 0.0 0.0 0.0 0.018800982502956608 0.0 19 0.0 0.0 0.0 0.02062043242259757 0.0 20 0.0 0.0 0.0 0.02243988234223853 0.0 21 0.0 0.0 0.0 0.02486581556842648 0.0 22 0.0 0.0 0.0 0.026078782181520453 0.0 23 0.0 0.0 0.0 0.0285047154077084 0.0 24 0.0 0.0 0.0 0.02911119871425539 0.0 25 0.0 0.0 0.0 0.030324165327349363 0.0 26 0.0 0.0 0.0 0.030930648633896354 0.0 27 0.0 0.0 0.0 0.041847348151742125 0.0 28 0.0 0.0 0.0 0.05761591412196379 0.0 29 0.0 0.0 0.0 0.07702337993146739 0.0 30 0.0 0.0 0.0 0.10370864541953483 0.0 31 0.0 0.0 0.0 0.13221336082724322 0.0 32 0.0 0.0 0.0 0.1667829093004215 0.0 33 0.0 0.0 0.0 0.20256542438669375 0.0 34 0.0 0.0 0.0 0.26139430512175155 0.0 35 0.0 0.0 0.0 0.3626770173150984 0.0 36 0.0 0.0 0.0 0.4961033447554356 0.0 37 0.0 0.0 0.0 0.7702337993146738 0.0 38 0.0 0.0 0.0 1.1098644509809867 0.0 39 0.0 0.0 0.0 1.4725414682960851 0.0 40 0.0 0.0 0.0 1.9977560117657762 0.0 41 0.0 0.0 0.0 2.541771537738424 0.0 42 0.0 0.0 0.0 3.14643539436577 0.0 43 0.0 0.0 0.0 3.8232707644722077 0.0 44 0.0 0.0 0.0 4.491615368286988 0.0 45 0.0 0.0 0.0 5.2679140006671314 0.0 46 0.0 0.0 0.0 5.9999393516693456 0.0 47 0.0 0.0 0.0 6.775631500742942 0.0 48 0.0 0.0 0.0 7.439730721411893 0.0 49 0.0 0.0 0.0 8.109288291839768 0.0 50 0.0 0.0 0.0 8.791582011705128 0.0 51 0.0 0.0 0.0 9.430815416805652 0.0 52 0.0 0.0 0.0 10.169512084179884 0.0 53 0.0 0.0 0.0 10.875458653000576 0.0 54 0.0 0.0 0.0 11.567456105770688 0.0 55 0.0 0.0 0.0 12.178184795463505 0.0 56 0.0 0.0 0.0 12.824089516936047 0.0 57 0.0 0.0 0.0 13.387512508718197 0.0 58 0.0 0.0 0.0 13.979440215908058 0.0 59 0.0 0.0 0.0 14.576219789550292 0.0 60 0.0 0.0 0.0 15.165115080207418 0.0 61 0.0 0.0 0.0 15.722473238924099 0.0 62 0.0 0.0 0.0 16.267095248203294 0.0 63 0.0 0.0 0.0 16.868120204991357 0.0 64 0.0 0.0 0.0 17.536464808806137 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAGCGA 15 0.002217584 70.03126 49 CGTCAAT 15 0.0022229294 69.98878 32 GACATTA 20 0.0069292793 52.523445 55 TCCGCGC 20 0.0069459337 52.491585 13 GTCAATC 20 0.0069459337 52.491585 33 GATGCGT 20 0.0069459337 52.491585 5 TTTGACC 40 7.453182E-7 52.491585 38 AGGATGC 20 0.0069459337 52.491585 3 CTCGTAT 1960 0.0 51.777412 39 TCGTATG 1995 0.0 51.74609 40 TATGCCG 1975 0.0 51.738537 43 CGTATGC 1990 0.0 51.700253 41 ATCTCGT 1875 0.0 51.698376 37 TCTCGTA 1875 0.0 51.698376 38 GCCGTCT 1980 0.0 51.623543 46 ATGCCGT 1985 0.0 51.47789 44 GTATGCC 1995 0.0 51.219856 42 CGTCTTC 1990 0.0 51.188225 48 CCGTCTT 1990 0.0 51.188225 47 TGCCGTC 1990 0.0 51.188225 45 >>END_MODULE